mRNA_H-akashiwo_Contig1213.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1213.4.1
Unique NamemRNA_H-akashiwo_Contig1213.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1213.4.1 vs. uniprot
Match: A0A7S3UU73_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU73_HETAK)

HSP 1 Score: 135 bits (340), Expect = 4.810e-37
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 1 
Query:    1 MTGLAAPEILPVTMYLLRQQQSTLKRITEITRDKIVADTGAAVRERELELYLNLQPGTYTILVATYIAGEE 213
            MTGLAAPEILPVTMYLLRQQQSTLKRITEITRDKIVADTGAAVRERELELYLNLQPGTYTILVATYIAG E
Sbjct:  176 MTGLAAPEILPVTMYLLRQQQSTLKRITEITRDKIVADTGAAVRERELELYLNLQPGTYTILVATYIAGME 246
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BLAST of mRNA_H-akashiwo_Contig1213.4.1 vs. uniprot
Match: A0A7S3USS7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USS7_HETAK)

HSP 1 Score: 135 bits (340), Expect = 5.880e-36
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 1 
Query:    1 MTGLAAPEILPVTMYLLRQQQSTLKRITEITRDKIVADTGAAVRERELELYLNLQPGTYTILVATYIAGEE 213
            MTGLAAPEILPVTMYLLRQQQSTLKRITEITRDKIVADTGAAVRERELELYLNLQPGTYTILVATYIAG E
Sbjct:  332 MTGLAAPEILPVTMYLLRQQQSTLKRITEITRDKIVADTGAAVRERELELYLNLQPGTYTILVATYIAGME 402
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1213.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3UU73_HETAK4.810e-3798.59Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3USS7_HETAK5.880e-3698.59Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1213contigH-akashiwo_Contig1213:178912..180295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog65071.PYU1_T001003
PFAMsC2,Calpain_III,Peptidase_C2,WW
Model size231
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.46e-09
EggNOG OGsKOG0045@1|root,KOG0045@2759|Eukaryota,1MAFJ@121069|Pythiales
Ec32 ortholog descriptionPeptidase C2, calpain, catalytic domain
Ec32 orthologEc-01_007845.1
DescriptionCalpain family cysteine protease containing protein. Source PGD
Cds size231
COG categoryOT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387123.1760826-CDS-H-akashiwo_Contig1213:178911..1790061681387123.1760826-CDS-H-akashiwo_Contig1213:178911..179006Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1213 178912..179006 +
1681387123.1853793-CDS-H-akashiwo_Contig1213:180159..1802951681387123.1853793-CDS-H-akashiwo_Contig1213:180159..180295Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1213 180160..180295 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1213.4.1prot_H-akashiwo_Contig1213.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1213 178912..180295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1213.4.1

>prot_H-akashiwo_Contig1213.4.1 ID=prot_H-akashiwo_Contig1213.4.1|Name=mRNA_H-akashiwo_Contig1213.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=77bp
MTGLAAPEILPVTMYLLRQQQSTLKRITEITRDKIVADTGAAVRERELEL
YLNLQPGTYTILVATYIAGEERHYFK*
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mRNA from alignment at H-akashiwo_Contig1213:178912..180295+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1213.4.1 ID=mRNA_H-akashiwo_Contig1213.4.1|Name=mRNA_H-akashiwo_Contig1213.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1384bp|location=Sequence derived from alignment at H-akashiwo_Contig1213:178912..180295+ (Heterosigma akashiwo CCMP452)
ATGACAGGTCTGGCGGCCCCTGAAATTTTACCAGTTACAATGTATCTCCT
GCGGCAACAGCAAAGTACACTAAAGCGAATAACAGAAATTACAAGGTGCG
TGTGGATTTTTTTCAACATATATATTCTTCTAATGAATTCCAGAACTGAA
CCTTCGATGCATGATTTTGTTGGGCGGGTTCCCCCCCGAGTGACTTGCAG
TAGCAGCCTGGGCAGCTTGCGGCAGCCCACGACAGCCAGCCGCATTCCCC
AGTCATGAACCCTTGTTTTTGTAATACTGGGTTTTCTGTGTTTGAAGATA
CGAATGACAAATGACGCAAGTGGTCTCTGACTAGAACAGCAGCATCATAA
ATAGTACAAGAAGAAGGAGTAGTTACAGCACACATCACCTCATCGTCATC
ACACAACGAGCACCAGAACTTGAATGTTCACCACCAAGCCACAAGGCAAC
AACAACCCCGCCAACTTTGTCATATAATTGTACTTATCCATTATCTATCA
ATGAACTGGGCGTTCCGCACCCAAGTGTTGTACATATTCATATATAAGTA
TACTACTATTTAATAATATATTGCATACAACAAGTGTAGTGGGTACAAAT
AAATTTTACTACAACAATCACCCCCCCCCTTTTCAGAAAATTTTCAACCT
TGGTGCTTTACATTTGGATTACTTTGATTCGCTGGTTGGTTTTGCTAACT
ATAATGCGTGTTCTTGTTGGCCGCTAGCATCTGTTGGCCTGTTGACCAGG
ATCTTATCTTTTTGATTTGCTGATCCTGGGCAAATCAAGTTCAGTGCTGC
TCTTCTCGCTGGCCGTTGGGTTAGTGTTTCTGTTTGTTTTTTGCATGATT
GTCAATTTTGGCAATGGTTTATGCTTCTATAGCAGCAGAAGGAGGAAGAG
GACCTCCATTTCGAGTGGTTGTTTGAGGAAGTGCTGATGATGCTGTGACT
TATGTAGTATAGTAGTTTAGCTGCTGGTAGTAGTTGACTCCTACACATTC
CCATTCATATTTTTGGACAGCAGTTATAACGGACAATGGCTTTTATAGCG
AAACCGGTCTGCAACAGTCCTTTTAAAAATATATATTGGAATCACACAAT
ATAGTTTCATGATGTTGTATTTCATGCGCTATAGCAGTAATTTTGGCCTG
TCCGTGAAGCATTAGACTGGGCCAATGTCTTCCTTTTGGAATATCCTATG
CCCTGATTGATGTTCTTATTGACCAATTTTCTTGATTTTTGTCATCAGAG
ATAAAATTGTTGCCGATACTGGTGCAGCAGTCCGAGAAAGGGAGCTTGAG
CTTTACCTCAATCTCCAGCCTGGTACCTACACCATTTTGGTGGCAACTTA
TATTGCAGGTGAGGAACGTCACTATTTCAAGTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1213:178912..180295+

>mRNA_H-akashiwo_Contig1213.4.1 ID=mRNA_H-akashiwo_Contig1213.4.1|Name=mRNA_H-akashiwo_Contig1213.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=231bp|location=Sequence derived from alignment at H-akashiwo_Contig1213:178912..180295+ (Heterosigma akashiwo CCMP452)
ATGACAGGTCTGGCGGCCCCTGAAATTTTACCAGTTACAATGTATCTCCT
GCGGCAACAGCAAAGTACACTAAAGCGAATAACAGAAATTACAAGAGATA
AAATTGTTGCCGATACTGGTGCAGCAGTCCGAGAAAGGGAGCTTGAGCTT
TACCTCAATCTCCAGCCTGGTACCTACACCATTTTGGTGGCAACTTATAT
TGCAGGTGAGGAACGTCACTATTTCAAGTAA
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