mRNA_H-akashiwo_Contig121.23.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig121.23.1
Unique NamemRNA_H-akashiwo_Contig121.23.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig121.23.1 vs. uniprot
Match: A0A7S3UUB9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUB9_HETAK)

HSP 1 Score: 403 bits (1035), Expect = 3.740e-140
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 1 
Query:   64 MALQSSFSNALAIFFFVVVLACSPKTCRATCYDEIVDKGVAFFNNSVVSGTLGYANLLDGCTIKDTIGGVKAVASGTLYLSSNELSEYSGKSIQYDGSGLLTITPTTKFNFFHIRTFTVAFWAKPTQDRTSDEYLFSNALGVQGFAVTCTSTDQWSFVLGDGSSMVAATGGTCATDSVSFVAVTYNDASDQANLYVDGQLVANLTS 681
            MALQSSFSNALAIFFFVVVLACSPKTCRATCYDEIVDKGVAFFNNSVVSGTLGYANLLDGCTIKDTIGGVKAVASGTLYLSSNELSEYSGKSIQYDGSGLLTITPTTKFNFFHIRTFTVAFWAKPTQDRTSDEYLFSNALGVQGFAVTCTSTDQWSFVLGDGSSMVAATGGTCATDSVSFVAVTYNDASDQANLYVDGQLVANLTS
Sbjct:    1 MALQSSFSNALAIFFFVVVLACSPKTCRATCYDEIVDKGVAFFNNSVVSGTLGYANLLDGCTIKDTIGGVKAVASGTLYLSSNELSEYSGKSIQYDGSGLLTITPTTKFNFFHIRTFTVAFWAKPTQDRTSDEYLFSNALGVQGFAVTCTSTDQWSFVLGDGSSMVAATGGTCATDSVSFVAVTYNDASDQANLYVDGQLVANLTS 206
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig121.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UUB9_HETAK3.740e-140100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig121contigH-akashiwo_Contig121:1538222..1540783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size730
Hectar predicted targeting categorysignal anchor
Exons6
Cds size729
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig121.23.1prot_H-akashiwo_Contig121.23.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig121 1538222..1540783 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387121.6087594-CDS-H-akashiwo_Contig121:1538221..15383411681387121.6087594-CDS-H-akashiwo_Contig121:1538221..1538341Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig121 1538222..1538341 -
1681387121.6186624-CDS-H-akashiwo_Contig121:1539016..15391421681387121.6186624-CDS-H-akashiwo_Contig121:1539016..1539142Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig121 1539017..1539142 -
1681387121.6278887-CDS-H-akashiwo_Contig121:1539419..15395241681387121.6278887-CDS-H-akashiwo_Contig121:1539419..1539524Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig121 1539420..1539524 -
1681387121.6373572-CDS-H-akashiwo_Contig121:1540052..15401631681387121.6373572-CDS-H-akashiwo_Contig121:1540052..1540163Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig121 1540053..1540163 -
1681387121.6470687-CDS-H-akashiwo_Contig121:1540398..15405171681387121.6470687-CDS-H-akashiwo_Contig121:1540398..1540517Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig121 1540399..1540517 -
1681387121.654561-CDS-H-akashiwo_Contig121:1540635..15407831681387121.654561-CDS-H-akashiwo_Contig121:1540635..1540783Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig121 1540636..1540783 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig121.23.1

>prot_H-akashiwo_Contig121.23.1 ID=prot_H-akashiwo_Contig121.23.1|Name=mRNA_H-akashiwo_Contig121.23.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=243bp
QGEEDLVHRFDIWSSLVASSQMALQSSFSNALAIFFFVVVLACSPKTCRA
TCYDEIVDKGVAFFNNSVVSGTLGYANLLDGCTIKDTIGGVKAVASGTLY
LSSNELSEYSGKSIQYDGSGLLTITPTTKFNFFHIRTFTVAFWAKPTQDR
TSDEYLFSNALGVQGFAVTCTSTDQWSFVLGDGSSMVAATGGTCATDSVS
FVAVTYNDASDQANLYVDGQLVANLTSRLQRRRHRHHHRAPV*
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mRNA from alignment at H-akashiwo_Contig121:1538222..1540783-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig121.23.1 ID=mRNA_H-akashiwo_Contig121.23.1|Name=mRNA_H-akashiwo_Contig121.23.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2562bp|location=Sequence derived from alignment at H-akashiwo_Contig121:1538222..1540783- (Heterosigma akashiwo CCMP452)
CAGGGGGAGGAGGATCTGGTGCACAGATTCGATATTTGGAGTTCGTTGGT
TGCCTCTTCACAAATGGCCCTGCAATCGTCATTTTCGAATGCGCTAGCCA
TTTTTTTCTTTGTGGTGGTACTCGCATGCTCGCCGAAGACCTGCAGAGGT
GGTATGGGTCGTACGATAGTACAGGGAGTGGCTCTCATCAGTTAACTTTT
ATCGTCACTTTCAAATTTAATGATGCACTATTTTAAACATTTGTTTGTGA
TATTTGCTGTCTTTAGCCACTTGCTATGACGAAATAGTGGATAAGGGAGT
GGCCTTTTTCAACAACAGTGTAGTGTCTGGAACACTGGGCTACGCAAACC
TTCTGGATGGATGCACAATTAAAGATACGATAGGGGTAAGAAGCACTTTC
CATTTATTTTTTACTCTCCCCCCTTCTCTTCCTTCCCCCTCCCACTCCTC
ACCAACCCACCACAGCTTGCACAAATAATATTATATTTTTTGGTACTTTA
TAAACACCCACACAGACGAACAACATTTTATCATTAGTGAATCAGAGAGC
TCTGCCTTGCACCATCAAGATAAAAGGTTGTCATATTTCATGTTTGTGTA
TCCATTGGACGTCTCCTCAGGGTGTAAAAGCAGTTGCCAGTGGTACACTT
TACCTGTCCAGCAATGAGCTCAGTGAATACAGTGGGAAGTCTATCCAATA
CGATGGATCTGGTCTTTTGACCATCACTCCCGTGCGTAAATACTATGCCC
AGTCTAATTTTTGATTATTGTAACAGTGCACATGCTGTACCACTGTTTCG
GACAACAGCAGTGTTCATCAACAACACCATTATACATGTTTAATTTGGGA
TTTCGCACTGTACGTATGCATGACTGATTCAACTGAACCCTATTAGTAAC
TACTACCATCATCCATATTACATACGTATGGAACCAAGCACCCAAAAACA
TTCTCCAACAATTATATTATGACATCAGTATCGACTTCAGTATTAAGGTG
ATGTGTACATCATGATGGTAATGTGATTATCTTCTAAAGAGTACTGCACT
TTCAATCACCAACCAGTACAGTGCAATTATGGTTATTGTGACGATGACCA
TCATATAATAAATACTGTAGTGATGATAACATTTATATTGGAATGAAAGT
GATTACTGATGTCAGTATTCATCGAACAATGAATTGATCTCTAGCAAATG
AAGAATGACAAGAACGTTTTGCCACCCACCCTCTTCCTAACTCCTCCCTC
CCCGGCCAGACCACCAAGTTCAACTTTTTCCACATCCGCACATTTACTGT
TGCATTTTGGGCCAAACCAACTCAAGACAGAACCTCGGACGAATATCTGT
TCTCCAACGCCTTGGTGAGCAGAGTGCCCGTTGCTCCGCTTGGAATCCTG
CCCCATGGACACCATGCACTCCCTCCCCACCCCCTCCCACTTCACTACAC
CGGCGCGCGCCCCGGCACTAGTGCCGCCCCCTTCGTCCCCGCCCAGCCCC
AGCCCCCTCCTTCTTCCCCTCTCTGCTCAACCTGGCACCACCCGCCCAAC
CCACCACTCACAGGCCTCTGAAACCGGGGGAGGGACGGTCTCGGGTGCGG
TCAGTGCCACGCTTTGTCGCCCCCCCCCCCCTCCCTTTCAGGGCGTGCAA
GGCTTCGCCGTGACCTGCACCTCGACGGACCAGTGGTCGTTCGTCCTGGG
GGACGGCTCGAGCATGGTCGCAGCCACGGGCGGCACCTGCGCGACCGACT
CCGTCTCTTTCGTTGCGGTGCGCAGCTGAAAGCATGATTGTGTGTCTGCA
CCATCATGCTCCGGCGTGGAACACGTGGGGGGGGGCATGGTTCCAGCTTT
TCGAAAGGCCATGGCCCTCCTCCGCTTTTGCCCTTCATCTCGCCCACACT
GCCTCCTTTTTGGAAAATATTCCATCCTTCGTACTTGTGCAGCTGAAGGG
TCATGCGCACTTGATGCTTGATCATGTGCCCTTCATATGAAGATCTCCGG
AACTGTGCCAGCGGCTCACCAGATGCAACGATCGGCTGGATGATGCCAAT
TTTTTAGAGTGTATGAGAGCAGCCTTGCTGGGAGCATCACCTTGTAAGTA
TCTGCTTCACTGCAAAAGAGTTCCAGGGGGGGGAGTAGGAGGCACGTACA
TGTGCTACTCATGGGCGGAGAACACCTGTCTGGGCAAGGCCAGCAAGAAG
CAACAATACAGTCCCTCCCTGTGGCACTGCTGCTGTTGCGCTGTTGTTAA
CCCACAACGACCTTAGCTGATTTATCATTACATATTTTTAATTACATACA
TGAAGTATGTACGTACGCACAACAAGGCCTACCCCATCTTACCACCCCCA
CACCCTTTCTACCGATGGGCCACCCAAGGCCGCCCAGGAGGGGATGGCGC
ACACTGAGTTTTTTTCTGTTCCGAAACAACAAATCCACACAGGTGACCTA
CAACGACGCCTCGGACCAGGCCAACCTCTACGTGGACGGGCAGCTGGTGG
CGAACCTCACCTCCCGGCTACAGCGCCGCCGTCACCGACATCACCATCGG
GCGCCGGTATGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig121:1538222..1540783-

>mRNA_H-akashiwo_Contig121.23.1 ID=mRNA_H-akashiwo_Contig121.23.1|Name=mRNA_H-akashiwo_Contig121.23.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=729bp|location=Sequence derived from alignment at H-akashiwo_Contig121:1538222..1540783- (Heterosigma akashiwo CCMP452)
CAGGGGGAGGAGGATCTGGTGCACAGATTCGATATTTGGAGTTCGTTGGT
TGCCTCTTCACAAATGGCCCTGCAATCGTCATTTTCGAATGCGCTAGCCA
TTTTTTTCTTTGTGGTGGTACTCGCATGCTCGCCGAAGACCTGCAGAGCC
ACTTGCTATGACGAAATAGTGGATAAGGGAGTGGCCTTTTTCAACAACAG
TGTAGTGTCTGGAACACTGGGCTACGCAAACCTTCTGGATGGATGCACAA
TTAAAGATACGATAGGGGGTGTAAAAGCAGTTGCCAGTGGTACACTTTAC
CTGTCCAGCAATGAGCTCAGTGAATACAGTGGGAAGTCTATCCAATACGA
TGGATCTGGTCTTTTGACCATCACTCCCACCACCAAGTTCAACTTTTTCC
ACATCCGCACATTTACTGTTGCATTTTGGGCCAAACCAACTCAAGACAGA
ACCTCGGACGAATATCTGTTCTCCAACGCCTTGGGCGTGCAAGGCTTCGC
CGTGACCTGCACCTCGACGGACCAGTGGTCGTTCGTCCTGGGGGACGGCT
CGAGCATGGTCGCAGCCACGGGCGGCACCTGCGCGACCGACTCCGTCTCT
TTCGTTGCGGTGACCTACAACGACGCCTCGGACCAGGCCAACCTCTACGT
GGACGGGCAGCTGGTGGCGAACCTCACCTCCCGGCTACAGCGCCGCCGTC
ACCGACATCACCATCGGGCGCCGGTATGA
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