mRNA_H-akashiwo_Contig1204.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1204.1.1
Unique NamemRNA_H-akashiwo_Contig1204.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1204.1.1 vs. uniprot
Match: A0A7S3Y3C5_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3C5_HETAK)

HSP 1 Score: 219 bits (557), Expect = 5.450e-67
Identity = 108/168 (64.29%), Postives = 133/168 (79.17%), Query Frame = 1
Query:    1 WETALHGELASLSKNNSYTLTDLPPGANVIGTRWVLSKKFDADGLLVKHKARLLAQGCSQKYRVDFTQTYTPLVNAASLRLLLAISANKGYHVDSLDISTAFLNGDIDGDVY-RQPPDFADPEHPNKVWKPNKALYGLKQSPCIWYLQLHDHLFLQGFKRSGYESCLY 501
            ++ A+  EL S+  ++   L DLPPGANVIGTRWVLSKKFDADG L K+KARL+AQG +Q+  VDF+ TY+P+V A SLRL+L+I+ANKG+ V++LDISTAFLN DIDGDVY +QPP F D +HP+KVWK  KALYGL+QSP +WY  LH+ L  Q F RS YESCLY
Sbjct:  200 YDRAMLKELGSMESHDVKELVDLPPGANVIGTRWVLSKKFDADGNLQKYKARLVAQGFTQREGVDFSATYSPVVAAPSLRLMLSIAANKGHAVEALDISTAFLNSDIDGDVYVKQPPGFVDKDHPHKVWKLKKALYGLRQSPRLWYNTLHEFLLQQNFVRSDYESCLY 367          
BLAST of mRNA_H-akashiwo_Contig1204.1.1 vs. uniprot
Match: A0A7S3Y3B6_HETAK (Hypothetical protein (Fragment) n=6 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3B6_HETAK)

HSP 1 Score: 213 bits (543), Expect = 3.990e-65
Identity = 104/168 (61.90%), Postives = 131/168 (77.98%), Query Frame = 1
Query:    1 WETALHGELASLSKNNSYTLTDLPPGANVIGTRWVLSKKFDADGLLVKHKARLLAQGCSQKYRVDFTQTYTPLVNAASLRLLLAISANKGYHVDSLDISTAFLNGDIDGDVY-RQPPDFADPEHPNKVWKPNKALYGLKQSPCIWYLQLHDHLFLQGFKRSGYESCLY 501
            ++ A+  EL S+  +    L DLPPGA+ IGTRW+LSKKFDADG L K+KARL+AQG +Q+  VDF+ TY+P++ A SLRL+L+I+ANKG+ V++LDISTAFLN DIDGDVY +QPP F D +HP+KVWK  KALYGL+QSP +WY  LH+ L  Q F RS YESCLY
Sbjct:  129 YDQAMLKELDSMESHGVKELVDLPPGAHAIGTRWILSKKFDADGNLQKYKARLVAQGFTQREGVDFSTTYSPVIAAPSLRLMLSIAANKGHAVEALDISTAFLNSDIDGDVYVKQPPGFVDKDHPHKVWKLKKALYGLRQSPRLWYNTLHEFLLQQNFVRSDYESCLY 296          
BLAST of mRNA_H-akashiwo_Contig1204.1.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 174 bits (442), Expect = 1.360e-51
Identity = 83/108 (76.85%), Postives = 94/108 (87.04%), Query Frame = 1
Query:  181 KYRVDFTQTYTPLVNAASLRLLLAISANKGYHVDSLDISTAFLNGDIDGDVY-RQPPDFADPEHPNKVWKPNKALYGLKQSPCIWYLQLHDHLFLQGFKRSGYESCLY 501
            K+ +DF QTY+P+VNAASLRLLLAISANKGY VDSLDISTAFLNG +  DVY RQPP + DP+HPNKVWK NKALYGLKQSP +WY++LHDHL   GFKRSG+ESCLY
Sbjct:    1 KFGIDFQQTYSPVVNAASLRLLLAISANKGYAVDSLDISTAFLNGAMTDDVYVRQPPSYVDPQHPNKVWKLNKALYGLKQSPRVWYMELHDHLESLGFKRSGHESCLY 108          
BLAST of mRNA_H-akashiwo_Contig1204.1.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 167 bits (422), Expect = 9.020e-45
Identity = 81/168 (48.21%), Postives = 117/168 (69.64%), Query Frame = 1
Query:    1 WETALHGELASLSKNNSYTLTDLPPGANVIGTRWVLSKKFDADGLLVKHKARLLAQGCSQKYRVDFTQTYTPLVNAASLRLLLAISANKGYHVDSLDISTAFLNGDIDGDVY-RQPPDFADPEHPNKVWKPNKALYGLKQSPCIWYLQLHDHLFLQGFKRSGYESCLY 501
            W  A+  E  SL ++N + L D P GAN++G RW+L+KK+DADG L K+KARL AQG SQ   VD+T T++P+V++ASLR +L I+A++   +  +DI TAFL+G ++ D+Y +QP  +  P   +KV K  K+LYGLKQ+P  WY  L+  L  QG+ R+GY+SC+Y
Sbjct:  499 WREAVADEYDSLLRHNVWELVDKPSGANIVGCRWILAKKYDADGNLSKYKARLCAQGYSQIEGVDYTNTFSPVVSSASLRTVLTIAASEDMEIHCMDIKTAFLHGKLEEDIYMKQPEGYEVPGMEHKVLKLKKSLYGLKQAPKCWYQNLNGFLLQQGYTRNGYDSCVY 666          
BLAST of mRNA_H-akashiwo_Contig1204.1.1 vs. uniprot
Match: Q849B9_ASTYP (Putative gag-pol polyprotein n=1 Tax=Aster yellows phytoplasma TaxID=35779 RepID=Q849B9_ASTYP)

HSP 1 Score: 152 bits (383), Expect = 1.890e-42
Identity = 70/167 (41.92%), Postives = 111/167 (66.47%), Query Frame = 1
Query:    1 WETALHGELASLSKNNSYTLTDLPPGANVIGTRWVLSKKFDADGLLVKHKARLLAQGCSQKYRVDFTQTYTPLVNAASLRLLLAISANKGYHVDSLDISTAFLNGDIDGDVYRQPPDFADPEHPNKVWKPNKALYGLKQSPCIWYLQLHDHLFLQGFKRSGYESCLY 501
            W  A++ EL+S  +NNS+ LTDLPPG   + ++WV   K DADG ++ HKARL+ +GC+Q+  +D+ + Y+P+V  +S+R LLA++A K   +D +D  +AFL GD+  ++Y   P+ +  E PNKV +  K++YGLKQ+  +W  +LH  L   G  +S ++SC+Y
Sbjct:   91 WVQAMNQELSSQVQNNSWELTDLPPGRKALNSKWVFKTKRDADGNVICHKARLVVKGCAQRKGIDYDEVYSPVVRYSSVRYLLALAAEKDLQIDQMDAVSAFLQGDLTEEIYMNQPEGSHQE-PNKVCRLRKSIYGLKQASRVWNKKLHSCLTKIGLAQSNFDSCVY 256          
BLAST of mRNA_H-akashiwo_Contig1204.1.1 vs. uniprot
Match: B6V6Z8_DROME (Polyprotein n=1 Tax=Drosophila melanogaster TaxID=7227 RepID=B6V6Z8_DROME)

HSP 1 Score: 159 bits (403), Expect = 3.430e-42
Identity = 79/168 (47.02%), Postives = 114/168 (67.86%), Query Frame = 1
Query:    1 WETALHGELASLSKNNSYTLTDLPPGANVIGTRWVLSKKFDADGLLVKHKARLLAQGCSQKYRVDFTQTYTPLVNAASLRLLLAISANKGYHVDSLDISTAFLNGDIDGDVY-RQPPDFADPEHPNKVWKPNKALYGLKQSPCIWYLQLHDHLFLQGFKRSGYESCLY 501
            W+T++  E  +L  NN++TL DLPPG   IG++WV   K D +G + K K+RL+AQGC QK  V++++T++P++   ++R+L AI+A K   +  +DIS A+LNG +  +VY RQP +F D +HPNKV K  KA+YGLKQS  +W   L + L   GFKRS  E+CLY
Sbjct:  824 WKTSMQKEYDALVSNNTWTLCDLPPGQKAIGSKWVFRVKRDKEGNIQKFKSRLVAQGCGQKMGVNYSETFSPVIRYETIRMLFAIAAEKQLCMHQVDISNAYLNGRLQEEVYMRQPQNFIDEKHPNKVLKLQKAIYGLKQSGRVWNDTLDEVLKSIGFKRSKNEACLY 991          
BLAST of mRNA_H-akashiwo_Contig1204.1.1 vs. uniprot
Match: A0A5N6Q2H9_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q2H9_9ASTR)

HSP 1 Score: 156 bits (394), Expect = 8.510e-42
Identity = 73/168 (43.45%), Postives = 110/168 (65.48%), Query Frame = 1
Query:    1 WETALHGELASLSKNNSYTLTDLPPGANVIGTRWVLSKKFDADGLLVKHKARLLAQGCSQKYRVDFTQTYTPLVNAASLRLLLAISANKGYHVDSLDISTAFLNGDIDGDVY-RQPPDFADPEHPNKVWKPNKALYGLKQSPCIWYLQLHDHLFLQGFKRSGYESCLY 501
            W+T +H ELA++ KN ++ LT LP G N++G +W+   K   DG +VK+KARL+A+G SQ+Y VDF +T+ P+    ++R+++AI+A  G+ +  LD+ +AFLNGD+  ++Y  QP  F        V+K +KALYGLKQSP  WY ++  +    GF+RS  E  LY
Sbjct:   70 WQTTMHEELAAIEKNQTWVLTTLPAGKNLVGLKWLYKTKVGPDGKIVKYKARLVAKGYSQQYGVDFLETFAPVARFETIRVVVAIAAQMGWPIHQLDVKSAFLNGDLSEEIYVEQPEGFLVKGKEQMVYKLHKALYGLKQSPRAWYAKIDGYFAEHGFRRSANEPTLY 237          
BLAST of mRNA_H-akashiwo_Contig1204.1.1 vs. uniprot
Match: Q7XET2_ORYSJ (Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XET2_ORYSJ)

HSP 1 Score: 158 bits (399), Expect = 1.190e-41
Identity = 76/168 (45.24%), Postives = 113/168 (67.26%), Query Frame = 1
Query:    1 WETALHGELASLSKNNSYTLTDLPPGANVIGTRWVLSKKFDADGLLVKHKARLLAQGCSQKYRVDFTQTYTPLVNAASLRLLLAISANKGYHVDSLDISTAFLNGDIDGDVY-RQPPDFADPEHPNKVWKPNKALYGLKQSPCIWYLQLHDHLFLQGFKRSGYESCLY 501
            W  A+H EL +  +N  +TL + P G NVIGT+WV   K + DGL+V++KARL+AQG +Q   +DF +T+ P+    ++RLLLA +A+KG+ +  +D+ +AFLNG I  +VY +QPP F +P+ PN V+K +KALYGLKQ+P  WY +L + L  +GF     +  L+
Sbjct:  922 WINAMHEELENFERNKVWTLVEPPSGHNVIGTKWVFKNKQNEDGLIVRNKARLVAQGFTQVEGLDFDETFAPVARIEAIRLLLAFAASKGFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENPDFPNHVFKLSKALYGLKQAPRAWYDRLKNFLLAKGFTMGKVDKTLF 1089          
BLAST of mRNA_H-akashiwo_Contig1204.1.1 vs. uniprot
Match: L0P1Q5_PHYED (PH01B035L11.21 protein n=1 Tax=Phyllostachys edulis TaxID=38705 RepID=L0P1Q5_PHYED)

HSP 1 Score: 158 bits (399), Expect = 1.220e-41
Identity = 73/168 (43.45%), Postives = 114/168 (67.86%), Query Frame = 1
Query:    1 WETALHGELASLSKNNSYTLTDLPPGANVIGTRWVLSKKFDADGLLVKHKARLLAQGCSQKYRVDFTQTYTPLVNAASLRLLLAISANKGYHVDSLDISTAFLNGDIDGDVY-RQPPDFADPEHPNKVWKPNKALYGLKQSPCIWYLQLHDHLFLQGFKRSGYESCLY 501
            W  A+H EL +  +N  ++L + P G N+IGT+WV   K   DG+++++KARL+AQG SQ   +DF +T+ P+    ++R+LLA +A+KG+ +  +D+ +AFLNG I+ +VY RQPP F +P++PN V+K +KALYGLKQ+P  WY +L  +L   GF+    +  L+
Sbjct: 1484 WVNAMHEELENFERNKVWSLVEPPRGHNIIGTKWVFKNKQSEDGVIIRNKARLVAQGFSQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLYQMDVKSAFLNGLIEEEVYVRQPPGFENPKYPNHVFKLSKALYGLKQAPRAWYERLKSYLLSHGFEMGKVDKTLF 1651          
BLAST of mRNA_H-akashiwo_Contig1204.1.1 vs. uniprot
Match: W8BPA6_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8BPA6_CERCA)

HSP 1 Score: 154 bits (390), Expect = 4.400e-41
Identity = 77/168 (45.83%), Postives = 111/168 (66.07%), Query Frame = 1
Query:    1 WETALHGELASLSKNNSYTLTDLPPGANVIGTRWVLSKKFDADGLLVKHKARLLAQGCSQKYRVDFTQTYTPLVNAASLRLLLAISANKGYHVDSLDISTAFLNGDIDGDVY-RQPPDFADPEHPNKVWKPNKALYGLKQSPCIWYLQLHDHLFLQGFKRSGYESCLY 501
            W  A+  E  SL+K+ ++TLTD P G NVIG RWV  KK+D  G L K+KARL+AQGCSQK   DF  TY P+V   ++RL+L+++A +   V+ +D+  A+LNG+++ ++Y RQP  F D   PNKV +  K+LYGLKQ+   W  +++  L   GFKR   ++C+Y
Sbjct:  316 WRVAMQAEYDSLTKSGAWTLTDRPHGKNVIGCRWVFVKKYDETGKLEKYKARLVAQGCSQKPGEDFELTYAPVVRHTTIRLILSLAAQQKLLVNHIDVVAAYLNGELEEELYMRQPEGFVDKTKPNKVCRLQKSLYGLKQAGRYWNEKINKVLCEMGFKRCKADNCVY 483          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1204.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y3C5_HETAK5.450e-6764.29Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y3B6_HETAK3.990e-6561.90Hypothetical protein (Fragment) n=6 Tax=Heterosigm... [more]
A0A7S3Y6S2_HETAK1.360e-5176.85Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y1P1_HETAK9.020e-4548.21Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
Q849B9_ASTYP1.890e-4241.92Putative gag-pol polyprotein n=1 Tax=Aster yellows... [more]
B6V6Z8_DROME3.430e-4247.02Polyprotein n=1 Tax=Drosophila melanogaster TaxID=... [more]
A0A5N6Q2H9_9ASTR8.510e-4243.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q7XET2_ORYSJ1.190e-4145.24Retrotransposon protein, putative, unclassified n=... [more]
L0P1Q5_PHYED1.220e-4143.45PH01B035L11.21 protein n=1 Tax=Phyllostachys eduli... [more]
W8BPA6_CERCA4.400e-4145.83Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1204contigH-akashiwo_Contig1204:56725..57225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog102107.XP_008229173.1
PFAMsC2,Chorein_N,Pex24p,SHR-BD,VPS13,VPS13_C,VPS13_mid_rpt,Vps62
Model size501
Max annot lvl2759|Eukaryota
KEGG koko:K19525
Hectar predicted targeting categoryother localisation
Exons1
Evalue1e-37
EggNOG OGsCOG2801@1|root,COG5043@1|root,KOG0017@2759|Eukaryota,KOG1809@2759|Eukaryota
Descriptionregulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
Cds size501
COG categoryU
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387119.9862134-CDS-H-akashiwo_Contig1204:56724..572251681387119.9862134-CDS-H-akashiwo_Contig1204:56724..57225Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1204 56725..57225 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1204.1.1prot_H-akashiwo_Contig1204.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1204 56725..57225 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1204.1.1

>prot_H-akashiwo_Contig1204.1.1 ID=prot_H-akashiwo_Contig1204.1.1|Name=mRNA_H-akashiwo_Contig1204.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=167bp
WETALHGELASLSKNNSYTLTDLPPGANVIGTRWVLSKKFDADGLLVKHK
ARLLAQGCSQKYRVDFTQTYTPLVNAASLRLLLAISANKGYHVDSLDIST
AFLNGDIDGDVYRQPPDFADPEHPNKVWKPNKALYGLKQSPCIWYLQLHD
HLFLQGFKRSGYESCLY
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mRNA from alignment at H-akashiwo_Contig1204:56725..57225+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1204.1.1 ID=mRNA_H-akashiwo_Contig1204.1.1|Name=mRNA_H-akashiwo_Contig1204.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=501bp|location=Sequence derived from alignment at H-akashiwo_Contig1204:56725..57225+ (Heterosigma akashiwo CCMP452)
TGGGAGACTGCTCTGCATGGCGAGTTAGCGAGCCTGAGTAAGAATAACTC CTATACCCTGACCGATCTTCCACCTGGGGCAAATGTTATTGGCACTAGGT GGGTCCTTTCGAAGAAATTCGACGCCGATGGACTTCTGGTCAAGCACAAA GCCAGGCTTCTTGCTCAGGGATGCTCTCAGAAGTATAGGGTTGATTTTAC GCAAACGTACACTCCCCTTGTGAACGCAGCTAGCCTCAGGCTGTTGCTGG CTATCTCTGCCAACAAGGGGTACCATGTTGACTCTTTGGACATCAGCACG GCTTTTCTGAATGGTGATATCGATGGCGACGTCTATCGCCAGCCCCCGGA TTTTGCTGACCCTGAGCATCCCAACAAAGTGTGGAAGCCCAACAAGGCTC TGTACGGACTGAAACAGAGCCCTTGCATATGGTACCTGCAATTGCATGAC CACCTTTTCTTGCAGGGTTTCAAACGGAGTGGCTATGAGTCTTGCCTCTA T
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1204:56725..57225+

>mRNA_H-akashiwo_Contig1204.1.1 ID=mRNA_H-akashiwo_Contig1204.1.1|Name=mRNA_H-akashiwo_Contig1204.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=501bp|location=Sequence derived from alignment at H-akashiwo_Contig1204:56725..57225+ (Heterosigma akashiwo CCMP452)
TGGGAGACTGCTCTGCATGGCGAGTTAGCGAGCCTGAGTAAGAATAACTC
CTATACCCTGACCGATCTTCCACCTGGGGCAAATGTTATTGGCACTAGGT
GGGTCCTTTCGAAGAAATTCGACGCCGATGGACTTCTGGTCAAGCACAAA
GCCAGGCTTCTTGCTCAGGGATGCTCTCAGAAGTATAGGGTTGATTTTAC
GCAAACGTACACTCCCCTTGTGAACGCAGCTAGCCTCAGGCTGTTGCTGG
CTATCTCTGCCAACAAGGGGTACCATGTTGACTCTTTGGACATCAGCACG
GCTTTTCTGAATGGTGATATCGATGGCGACGTCTATCGCCAGCCCCCGGA
TTTTGCTGACCCTGAGCATCCCAACAAAGTGTGGAAGCCCAACAAGGCTC
TGTACGGACTGAAACAGAGCCCTTGCATATGGTACCTGCAATTGCATGAC
CACCTTTTCTTGCAGGGTTTCAAACGGAGTGGCTATGAGTCTTGCCTCTA
T
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