mRNA_H-akashiwo_Contig1203.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1203.5.1
Unique NamemRNA_H-akashiwo_Contig1203.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1203.5.1 vs. uniprot
Match: A0A7S3XW36_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XW36_HETAK)

HSP 1 Score: 115 bits (288), Expect = 2.310e-29
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 2 
Query:    2 QVLDWFVQICGAMAFVHGRHILHRDLKTNNVFLTDRNVVKLGDFGIARILENTL 163
            QVLDWFVQICGAMAFVHGRHILHRDLKTNNVFLTDRNVVKLGDFGIARILENTL
Sbjct:  106 QVLDWFVQICGAMAFVHGRHILHRDLKTNNVFLTDRNVVKLGDFGIARILENTL 159
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BLAST of mRNA_H-akashiwo_Contig1203.5.1 vs. uniprot
Match: A0A7S2V5J6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5J6_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.450e-22
Identity = 42/54 (77.78%), Postives = 50/54 (92.59%), Query Frame = 2 
Query:    2 QVLDWFVQICGAMAFVHGRHILHRDLKTNNVFLTDRNVVKLGDFGIARILENTL 163
            QVLDWFVQIC A+ F+H + +LHRDLK+NNVFLTDRNV+KLGDFGIAR+LE+TL
Sbjct:  106 QVLDWFVQICNAVHFIHSKRVLHRDLKSNNVFLTDRNVIKLGDFGIARLLEHTL 159
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BLAST of mRNA_H-akashiwo_Contig1203.5.1 vs. uniprot
Match: A0A7S1G7L4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G7L4_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.840e-19
Identity = 35/54 (64.81%), Postives = 49/54 (90.74%), Query Frame = 2 
Query:    2 QVLDWFVQICGAMAFVHGRHILHRDLKTNNVFLTDRNVVKLGDFGIARILENTL 163
            Q+LDWF+Q+  A+A++H + ILHRDLKT+NVF+T +N+VKLGDFGIAR+L++TL
Sbjct:  106 QILDWFIQLASAVAYIHAKRILHRDLKTSNVFITTKNMVKLGDFGIARVLDSTL 159
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BLAST of mRNA_H-akashiwo_Contig1203.5.1 vs. uniprot
Match: A0A7S2GL86_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2GL86_9EUKA)

HSP 1 Score: 81.6 bits (200), Expect = 7.800e-19
Identity = 32/53 (60.38%), Postives = 47/53 (88.68%), Query Frame = 2 
Query:    2 QVLDWFVQICGAMAFVHGRHILHRDLKTNNVFLTDRNVVKLGDFGIARILENT 160
            +++DWFVQ+ GA+AF+H + +LHRDLK+ NVFLT RN+VK+GDFGI+++L+ T
Sbjct:   37 RIMDWFVQVVGALAFMHAQSVLHRDLKSANVFLTSRNLVKVGDFGISKVLDGT 89
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BLAST of mRNA_H-akashiwo_Contig1203.5.1 vs. uniprot
Match: A0A0B6XX60_9EUPU (Protein kinase domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6XX60_9EUPU)

HSP 1 Score: 82.0 bits (201), Expect = 2.510e-18
Identity = 33/54 (61.11%), Postives = 45/54 (83.33%), Query Frame = 2 
Query:    2 QVLDWFVQICGAMAFVHGRHILHRDLKTNNVFLTDRNVVKLGDFGIARILENTL 163
            Q++ WF+QI  A+ ++H +HILHRDLKT NV L  RNV+KLGDFGI++IL+NT+
Sbjct:  109 QIMQWFIQIVMAVQYIHSKHILHRDLKTENVLLNKRNVIKLGDFGISKILDNTI 162
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BLAST of mRNA_H-akashiwo_Contig1203.5.1 vs. uniprot
Match: A0A484EH02_BRELC (Protein kinase domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EH02_BRELC)

HSP 1 Score: 85.9 bits (211), Expect = 2.930e-18
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 2 
Query:    2 QVLDWFVQICGAMAFVHGRHILHRDLKTNNVFLTDRNVVKLGDFGIARILENTL 163
            QVLDWFVQ+  A+ ++HG+ +LHRDLKTNNVFLT  NVVKLGDFGIA+ L++TL
Sbjct:  123 QVLDWFVQMAMAIRYLHGQRVLHRDLKTNNVFLTTENVVKLGDFGIAKTLDSTL 176
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BLAST of mRNA_H-akashiwo_Contig1203.5.1 vs. uniprot
Match: A0A0S7IEW9_9TELE (NEK1 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7IEW9_9TELE)

HSP 1 Score: 81.6 bits (200), Expect = 3.320e-18
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 2 
Query:    2 QVLDWFVQICGAMAFVHGRHILHRDLKTNNVFLTDRNVVKLGDFGIARILENTL 163
            Q+LDWFVQIC A+  VHGR ILHRD+K+ N+FLT    V+LGDFGIAR+L +T+
Sbjct:   61 QILDWFVQICLALKHVHGRKILHRDIKSQNIFLTKEGTVQLGDFGIARVLNSTV 114
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BLAST of mRNA_H-akashiwo_Contig1203.5.1 vs. uniprot
Match: A0A2V2VF70_TRYCR (Protein kinase domain-containing protein n=1 Tax=Trypanosoma cruzi TaxID=5693 RepID=A0A2V2VF70_TRYCR)

HSP 1 Score: 82.8 bits (203), Expect = 3.370e-18
Identity = 35/53 (66.04%), Postives = 45/53 (84.91%), Query Frame = 2 
Query:    5 VLDWFVQICGAMAFVHGRHILHRDLKTNNVFLTDRNVVKLGDFGIARILENTL 163
            V+ WF+QIC A+ ++H  HILHRD+KT N+FLT RNVVKLGDFGI+ +L+NTL
Sbjct:  125 VMFWFLQICMALKYLHDNHILHRDMKTANIFLTSRNVVKLGDFGISTVLQNTL 177
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BLAST of mRNA_H-akashiwo_Contig1203.5.1 vs. uniprot
Match: A0A7S4FJ37_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FJ37_9EUGL)

HSP 1 Score: 82.4 bits (202), Expect = 3.610e-18
Identity = 35/53 (66.04%), Postives = 44/53 (83.02%), Query Frame = 2 
Query:    2 QVLDWFVQICGAMAFVHGRHILHRDLKTNNVFLTDRNVVKLGDFGIARILENT 160
            QVLDWF+QIC A+ + H + +LHRD+KT N+FLT   VVKLGDFGI+RIL+NT
Sbjct:  117 QVLDWFLQICLAVKYCHSKRLLHRDIKTQNIFLTSTGVVKLGDFGISRILQNT 169
[Close]
BLAST of mRNA_H-akashiwo_Contig1203.5.1 vs. uniprot
Match: A0A8J6E2B6_9EUKA (Nek1 Ser/Thr kinase-like n=1 Tax=Carpediemonas membranifera TaxID=201153 RepID=A0A8J6E2B6_9EUKA)

HSP 1 Score: 85.5 bits (210), Expect = 4.010e-18
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 2 
Query:    2 QVLDWFVQICGAMAFVHGRHILHRDLKTNNVFLTDRNVVKLGDFGIARILENTL 163
            QVLDWFVQIC A+  VH R ILHRDLKT N+FLT  N+VKLGDFGIA++L++T+
Sbjct:  108 QVLDWFVQICLALKHVHDRKILHRDLKTQNIFLTKGNIVKLGDFGIAKVLKDTM 161
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1203.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XW36_HETAK2.310e-29100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2V5J6_9STRA2.450e-2277.78Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S1G7L4_9STRA4.840e-1964.81Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2GL86_9EUKA7.800e-1960.38Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A0B6XX60_9EUPU2.510e-1861.11Protein kinase domain-containing protein (Fragment... [more]
A0A484EH02_BRELC2.930e-1870.37Protein kinase domain-containing protein n=1 Tax=B... [more]
A0A0S7IEW9_9TELE3.320e-1864.81NEK1 (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
A0A2V2VF70_TRYCR3.370e-1866.04Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A7S4FJ37_9EUGL3.610e-1866.04Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A8J6E2B6_9EUKA4.010e-1870.37Nek1 Ser/Thr kinase-like n=1 Tax=Carpediemonas mem... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1203contigH-akashiwo_Contig1203:74171..75395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size167
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387119.7006874-CDS-H-akashiwo_Contig1203:74170..742781681387119.7006874-CDS-H-akashiwo_Contig1203:74170..74278Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1203 74171..74278 +
1681387119.7118506-CDS-H-akashiwo_Contig1203:75337..753941681387119.7118506-CDS-H-akashiwo_Contig1203:75337..75394Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1203 75338..75394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1203.5.1prot_H-akashiwo_Contig1203.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1203 74171..75394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1203.5.1

>prot_H-akashiwo_Contig1203.5.1 ID=prot_H-akashiwo_Contig1203.5.1|Name=mRNA_H-akashiwo_Contig1203.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=55bp
PGAGLVRADLRGHGLCARPAHPAPRPQDEQRVPHRPERGEAGGLRHRAHP
GEHPG
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mRNA from alignment at H-akashiwo_Contig1203:74171..75395+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1203.5.1 ID=mRNA_H-akashiwo_Contig1203.5.1|Name=mRNA_H-akashiwo_Contig1203.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1225bp|location=Sequence derived from alignment at H-akashiwo_Contig1203:74171..75395+ (Heterosigma akashiwo CCMP452)
CCAGGTGCTGGACTGGTTCGTGCAGATCTGCGGGGCCATGGCCTTTGTGC
ACGGCCGGCACATCCTGCACCGCGACCTCAAGACGAACAACGTGTTCCTC
ACCGACCGGTGGGGTGGGCGCCACGCTCCCGGGCGGGCCGCCGTAGTTTT
TATCTTGAACAGTTGAGGTGGTTGGGCTCTGCGCCATGGAAATCGTTCGA
GAAAATCCTTTATACAATGGGAATTACGGTAAGGTGCGAGTTGGCAAAGA
ATGCTCTCGTGGAAGGTTTTGATCTTTTGATATACTGAACAGCTTGTCTT
GGCCACCCCTTCTGACATCATGTCATCATTGAAGAACAACCTTCATCTGA
AATATGGGAGCAACCTCTCGTATGAGAATAATACGCTTTCAAAGTAACTT
AGAATAATCTTAACAATTTTTAAAATTTTAACTTAATATTCTTAAAGTCG
TGTATTCTTCTTAAAGTTGAATTAACACTGTGGTTATAAAGAAAAAGCAT
CAATGTTGGTGGAAGAGGACAAGTCTGGGTCTGCAGGTTGCATTCGGAGG
CAAAAATGGGAGTATCTCGTACGCCCCCCCCCCACCCCCCCCTCCCCACT
GCCACATGGGCTCCCGCCCAGTTACCACCGCCCCCCCCCCAGCCACACTC
TCCCGACTGATCGTTCCCCCGACTGTGCAAGCGGGGGTCAAGCCGCTTGT
CGTTCTCCTGACTGTGCAGAGGGAGAATCAAGGCAGTGCGTTCTCCAGAC
CATGAAGGGGGGGATCAAGGCACTGTTTGTTCTCCTGGCTGTGCAGAGGG
AGGATTAAGTTACTGCTTGTTCTCCTGAATGTGCAGGAGAGGATCAAGGC
ATTGCCCGTTCTCCCGTTCTCCCGACCCTGTAGGGAGGGATCAAGGCAGT
GTTCAGCATTGTCCACCCACTCTTGTCGGCGCAGCTTTCTGTCGGCATTA
TTAGAAAAACCAAACTCCGTGCCCACCACTTCTCGATTCCTTGTTGAAAG
GGGGTGGTCTATGCACCCCGTTGGACTAGTATTCAACGAAAATTCCGATC
CATTTCTCATGCCGCCTAGATGCAACACACCCAGACCCACCGTGCCCATG
CCAGGAGGGGGGGGGCCCCCCTCCCCGGCGCGGGCACCACCAGCCTCACC
CCGCCCGGGGGGCCCAGGAACGTGGTGAAGCTGGGGGACTTCGGCATCGC
GCGCATCCTGGAGAACACCCTGGAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1203:74171..75395+

>mRNA_H-akashiwo_Contig1203.5.1 ID=mRNA_H-akashiwo_Contig1203.5.1|Name=mRNA_H-akashiwo_Contig1203.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=165bp|location=Sequence derived from alignment at H-akashiwo_Contig1203:74171..75395+ (Heterosigma akashiwo CCMP452)
CCAGGTGCTGGACTGGTTCGTGCAGATCTGCGGGGCCATGGCCTTTGTGC
ACGGCCGGCACATCCTGCACCGCGACCTCAAGACGAACAACGTGTTCCTC
ACCGACCGGAACGTGGTGAAGCTGGGGGACTTCGGCATCGCGCGCATCCT
GGAGAACACCCTGGA
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