mRNA_H-akashiwo_Contig1202.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1202.7.1
Unique NamemRNA_H-akashiwo_Contig1202.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1202.7.1 vs. uniprot
Match: A0A7S3UWJ3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWJ3_HETAK)

HSP 1 Score: 176 bits (446), Expect = 1.610e-54
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = -1 
Query:   23 MKNRQPKPESWQNNILSLNGRDSSLLGLCFFLFQVELLDLIISWGCDRKLPNKPTDDTKASANGSFTPQHPKSFATSRRGHYF 271
            MKNRQPKPESWQNNILSLNGRDSSLLGLCFFLFQVELLDLIISWGCDRKLPNKPTDDTKASANGSFTPQHPKSFA+SRRGHYF
Sbjct:    1 MKNRQPKPESWQNNILSLNGRDSSLLGLCFFLFQVELLDLIISWGCDRKLPNKPTDDTKASANGSFTPQHPKSFASSRRGHYF 83
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1202.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UWJ3_HETAK1.610e-5498.80Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1202contigH-akashiwo_Contig1202:204382..204997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size481
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size174
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387119.418013-UTR-H-akashiwo_Contig1202:204381..2046601681387119.418013-UTR-H-akashiwo_Contig1202:204381..204660Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1202 204382..204660 -
1681387119.4344685-UTR-H-akashiwo_Contig1202:204834..2048391681387119.4344685-UTR-H-akashiwo_Contig1202:204834..204839Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1202 204835..204839 -
1681387119.4421813-UTR-H-akashiwo_Contig1202:204974..2049971681387119.4421813-UTR-H-akashiwo_Contig1202:204974..204997Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1202 204975..204997 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387119.4268613-CDS-H-akashiwo_Contig1202:204660..2048341681387119.4268613-CDS-H-akashiwo_Contig1202:204660..204834Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1202 204661..204834 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1202.7.1prot_H-akashiwo_Contig1202.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1202 204661..204834 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1202.7.1

>prot_H-akashiwo_Contig1202.7.1 ID=prot_H-akashiwo_Contig1202.7.1|Name=mRNA_H-akashiwo_Contig1202.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=58bp
MAPPAGSKALGMLWREAAIGTGLGIVGGFIWKFSVTTPTDNQIKKFYLKQ
EEAKAEK*
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mRNA from alignment at H-akashiwo_Contig1202:204382..204997-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1202.7.1 ID=mRNA_H-akashiwo_Contig1202.7.1|Name=mRNA_H-akashiwo_Contig1202.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=616bp|location=Sequence derived from alignment at H-akashiwo_Contig1202:204382..204997- (Heterosigma akashiwo CCMP452)
ATCCCAAGCCCCGTGCAAAGACGGTAAGCTCTGGCCGCATGGGTCATCAT
TATATTGTAGGTCCCTACTTGTTACCAATCTTAACGACTTCGGATTAGCA
TTCAACCCTTTTTTCAAAAGTCTTTCTATCTCTTTTTGTTGCTCTGAATT
TATTCCAGAAATAATGGCCCCTCCTGCTGGTAGCAAAGCTCTTGGGATGC
TGTGGCGTGAAGCTGCCATTGGCACTGGCCTTGGTATCGTCGGTGGGTTT
ATTTGGAAGTTTTCTGTCACAACCCCAACTGATAATCAAATCAAGAAGTT
CTACCTGAAACAGGAAGAAGCAAAGGCCGAGAAGTGAGCTGTCACGGCCG
TTGAGACTCAAGATATTATTCTGCCAGCTCTCCGGCTTTGGTTGCCTATT
TTTCATTAAACAAGTAGCCACATTAACGTTTCTGGCTAGGCTCAAAGATA
TTTACGCGTTTTCCCTGATGCCATTCTGCGGCACATGCCAGTTGCTGAGA
GCTAAAAGCACCTCATTTTAATTATCCTGCCATGACCGATTTCAAACTTG
GTTATGTTCTTTAACAATAATAAACCATATTCTAACGGTAAGAATCCTTA
AAAATTACACTAGGGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1202:204382..204997-

>mRNA_H-akashiwo_Contig1202.7.1 ID=mRNA_H-akashiwo_Contig1202.7.1|Name=mRNA_H-akashiwo_Contig1202.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=174bp|location=Sequence derived from alignment at H-akashiwo_Contig1202:204382..204997- (Heterosigma akashiwo CCMP452)
ATGGCCCCTCCTGCTGGTAGCAAAGCTCTTGGGATGCTGTGGCGTGAAGC
TGCCATTGGCACTGGCCTTGGTATCGTCGGTGGGTTTATTTGGAAGTTTT
CTGTCACAACCCCAACTGATAATCAAATCAAGAAGTTCTACCTGAAACAG
GAAGAAGCAAAGGCCGAGAAGTGA
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