mRNA_H-akashiwo_Contig1202.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1202.6.1
Unique NamemRNA_H-akashiwo_Contig1202.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1202.6.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 208 bits (529), Expect = 3.300e-64
Identity = 101/135 (74.81%), Postives = 116/135 (85.93%), Query Frame = 1
Query:    1 YCSMVGTLAWLANWTRPELTFAVDKLQRFQSNPEPKHFEAAQRVFRCLKGTHQSEKLRLGGDLILRAYTDSDFCQDRQKGKSVTGYVIMLGDSPVVWASNLQTAVSTSTMEADYLALRSAVKDIMWIRYLLVDLG 405
            Y SMVGTLAW+ANWTRPEL F V KLQR Q NPEPKHFEA QR FR LKGT QSE LRLGGDL+LRA++DSDFC DR  GKSVTGY++ LGD+P+VW+S LQ AV+TST+EA+YLALRSAVKDIMW+R LL ++G
Sbjct:  135 YRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGT-QSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMG 268          
BLAST of mRNA_H-akashiwo_Contig1202.6.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 119 bits (297), Expect = 1.870e-28
Identity = 57/133 (42.86%), Postives = 89/133 (66.92%), Query Frame = 1
Query:    7 SMVGTLAWLANWTRPELTFAVDKLQRFQSNPEPKHFEAAQRVFRCLKGTHQSEKLRLGGDLILRAYTDSDFCQDRQKGKSVTGYVIMLGDSPVVWASNLQTAVSTSTMEADYLALRSAVKDIMWIRYLLVDLG 405
            S+VGT+ WLA WT PE+ +++  L +  ++P      A+  + R L  T + + + LGG L L AY D+DFC +R KG+S +G+ I LG SP++W+S +Q  V+ +T EA+Y++LR+AV D+MW++ LL  LG
Sbjct:  784 SLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWT-EDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLG 915          
BLAST of mRNA_H-akashiwo_Contig1202.6.1 vs. uniprot
Match: A0A328KN85_9BACI (Uncharacterized protein (Fragment) n=1 Tax=Bacillus sp. SRB_8 TaxID=1969377 RepID=A0A328KN85_9BACI)

HSP 1 Score: 110 bits (275), Expect = 2.120e-28
Identity = 62/142 (43.66%), Postives = 87/142 (61.27%), Query Frame = 1
Query:    1 YCSMVGTLAWLANWTRPELTFAVDKLQRFQSNPEPKHFEAAQRVFRCLKGT-------HQSEKLRLGGDLILRAYTDSDFCQDRQKGKSVTGYVIMLGDSPVVWASNLQTAVSTSTMEADYLALRSAVKDIMWIRYLLVDLG 405
            Y  +VG+L WLA+ TRP+++ AV  L RF SNP   H+ AAQRV R L GT       H+ E+    G   L  Y+DSD+  D    +S +G+  ML   PV W S LQ++VS S++EA+Y+AL SA ++  W+R LL ++G
Sbjct:    3 YGELVGSLIWLASNTRPDISTAVGSLCRFISNPGRPHWVAAQRVLRYLAGTSSFGITYHRQEQ----GSSDLFGYSDSDWAGDPDTRRSTSGFAFMLAGGPVSWKSKLQSSVSLSSVEAEYIALCSAAREAYWLRQLLQEIG 140          
BLAST of mRNA_H-akashiwo_Contig1202.6.1 vs. uniprot
Match: A0A286UFH8_9AGAM (Uncharacterized protein n=2 Tax=Pyrrhoderma noxium TaxID=2282107 RepID=A0A286UFH8_9AGAM)

HSP 1 Score: 111 bits (278), Expect = 6.420e-28
Identity = 61/139 (43.88%), Postives = 90/139 (64.75%), Query Frame = 1
Query:    1 YCSMVGTLAWLANWTRPELTFAVDKLQRFQSNPEPKHFEAAQRVFRCLKGTHQSEKLRLGGDL----ILRAYTDSDFCQDRQKGKSVTGYVIMLGDSPVVWASNLQTAVSTSTMEADYLALRSAVKDIMWIRYLLVDLG 405
            Y  +VG+L +LA  T P+++FAV KL +F SNP   H++AAQ + R L+GT +S KL    D     +  +YTD+DF  DR   +S +G VI +G   V W+S LQ  V+ ST EA+Y+A  +A ++++W+RYLL +LG
Sbjct:    6 YAQLVGSLMYLAICTYPDISFAVGKLGQFSSNPGIAHWKAAQHLLRYLQGT-KSYKLTYAPDPSQTELFTSYTDADFAGDRSTRRSTSGMVIKVGTGAVSWSSKLQGIVTLSTTEAEYVAAVTAGQEVIWLRYLLTELG 143          
BLAST of mRNA_H-akashiwo_Contig1202.6.1 vs. uniprot
Match: A0A0A9W6P7_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9W6P7_LYGHE)

HSP 1 Score: 116 bits (290), Expect = 1.660e-27
Identity = 57/136 (41.91%), Postives = 90/136 (66.18%), Query Frame = 1
Query:    1 YCSMVGTLAWLANWTRPELTFAVDKLQRFQSNPEPKHFEAAQRVFRCLKGTHQSE-KLRLGGDLILRAYTDSDFCQDRQKGKSVTGYVIMLGDSPVVWASNLQTAVSTSTMEADYLALRSAVKDIMWIRYLLVDLG 405
            Y  +VG L +LA  TRP++ F V KL +F SNP  +H+ AA+RV R LKGT   + K+    D I+ A++DSD+   +   KS TG++I +G +PV+W SN Q  ++ STMEA+++A+ S   +++W+ Y+L ++G
Sbjct:  967 YRRLVGKLMYLAQATRPDIAFFVSKLGQFSSNPGKQHWAAAKRVLRYLKGTENYQLKITKDNDQII-AHSDSDWAGSKDDRKSTTGFIIKIGRTPVIWKSNKQACIALSTMEAEFIAISSCCMELVWLEYVLSEIG 1101          
BLAST of mRNA_H-akashiwo_Contig1202.6.1 vs. uniprot
Match: A0A177U0N4_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U0N4_9BASI)

HSP 1 Score: 114 bits (285), Expect = 7.810e-27
Identity = 59/138 (42.75%), Postives = 89/138 (64.49%), Query Frame = 1
Query:    1 YCSMVGTLAWLANWTRPELTFAVDKLQRFQSNPEPKHFEAAQRVFRCLKGTHQSEKL-RLGGDLI--LRAYTDSDFCQDRQKGKSVTGYVIMLGDSPVVWASNLQTAVSTSTMEADYLALRSAVKDIMWIRYLLVDLG 405
            + +MVG L W+A   RP+L FA   L RFQ+ P P+H +AA+R+ R L+ T   + + + G D I  L  + D+DF  D +  +S TG+V  +  +PV WAS LQT+VS ST+EA+Y+AL   +++ +W+R LL +LG
Sbjct:  928 FAAMVGCLKWIAQTMRPDLMFACGVLSRFQARPMPEHMDAAKRLMRFLRKTGDEDLVYQPGTDGIPRLAGFADADFAGDSETSRSTTGFVFYIHGNPVSWASRLQTSVSMSTVEAEYIALAEGLREGLWLRNLLSELG 1065          
BLAST of mRNA_H-akashiwo_Contig1202.6.1 vs. uniprot
Match: A0A177U1E5_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U1E5_9BASI)

HSP 1 Score: 114 bits (285), Expect = 7.860e-27
Identity = 59/138 (42.75%), Postives = 88/138 (63.77%), Query Frame = 1
Query:    1 YCSMVGTLAWLANWTRPELTFAVDKLQRFQSNPEPKHFEAAQRVFRCLKGTHQSEKL-RLGGDLI--LRAYTDSDFCQDRQKGKSVTGYVIMLGDSPVVWASNLQTAVSTSTMEADYLALRSAVKDIMWIRYLLVDLG 405
            + SM+G L W+A   RP+L F    L RFQ+ P P H EAA+R  R L+ T +++ + + G D I  L  + D+DF  D +  +S TG+V  +  +PV WAS LQT+VS ST+EA+Y+AL   +++ +W+R LL +LG
Sbjct: 1027 FASMIGCLKWIAQTVRPDLMFICGVLSRFQARPMPIHMEAAKRAMRFLRKTAEADLVYQPGTDSIPRLSGFADADFAGDSETSRSTTGFVFYVQGNPVSWASRLQTSVSMSTVEAEYIALAEGLREGLWLRNLLSELG 1164          
BLAST of mRNA_H-akashiwo_Contig1202.6.1 vs. uniprot
Match: UPI001E278ED1 (secreted RxLR effector protein 161-like n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E278ED1)

HSP 1 Score: 107 bits (267), Expect = 1.240e-26
Identity = 53/133 (39.85%), Postives = 82/133 (61.65%), Query Frame = 1
Query:    1 YCSMVGTLAWLANWTRPELTFAVDKLQRFQSNPEPKHFEAAQRVFRCLKGTHQSEKLRLGGDLILRAYTDSDFCQDRQKGKSVTGYVIMLGDSPVVWASNLQTAVSTSTMEADYLALRSAVKDIMWIRYLLVD 399
            Y   +G+L +L+ +TRP+++FAV  L RFQ+NP+  H+   +RVFR LKGT Q       G   L  Y D+DF  D +  KS T +VI    +PVVW S LQ+ ++ S+ EA+++AL  A  +++++  LL +
Sbjct:   36 YKKAIGSLLYLSLFTRPDISFAVGYLSRFQANPQQYHWTLVKRVFRYLKGTSQLGLKYTAGSPTLSCYCDADFAGDEKSQKSTTSFVIFAFGNPVVWCSKLQSTLAQSSAEAEFIALTHATNEVLFLAQLLAE 168          
BLAST of mRNA_H-akashiwo_Contig1202.6.1 vs. uniprot
Match: A0A2N5TK21_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5TK21_9BASI)

HSP 1 Score: 113 bits (282), Expect = 2.010e-26
Identity = 54/135 (40.00%), Postives = 84/135 (62.22%), Query Frame = 1
Query:    1 YCSMVGTLAWLANWTRPELTFAVDKLQRFQSNPEPKHFEAAQRVFRCLKGTHQSEKLRLGGDLILRAYTDSDFCQDRQKGKSVTGYVIMLGDSPVVWASNLQTAVSTSTMEADYLALRSAVKDIMWIRYLLVDLG 405
            Y  ++G+L W+A  TRP+++FAV+KL +F  +P   H+ AA RV   L  T    +LRLGG L+   Y+D+D+ +DR+  +S + Y   +GD  + W S  Q  VS S+ EA+Y AL  + K+ +W+R +L +LG
Sbjct: 1244 YNQIIGSLLWVAQCTRPDVSFAVNKLSQFLKDPSASHWTAAVRVLNYLVSTKHL-RLRLGGSLVCSGYSDADWAEDREDRRSTSAYTFRIGDGAISWKSRKQATVSLSSTEAEYKALSDSCKEGIWLRNILTELG 1377          
BLAST of mRNA_H-akashiwo_Contig1202.6.1 vs. uniprot
Match: A0A177TL22_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TL22_9BASI)

HSP 1 Score: 112 bits (280), Expect = 3.680e-26
Identity = 57/138 (41.30%), Postives = 87/138 (63.04%), Query Frame = 1
Query:    1 YCSMVGTLAWLANWTRPELTFAVDKLQRFQSNPEPKHFEAAQRVFRCLKGTHQSEKL-RLGGDLI--LRAYTDSDFCQDRQKGKSVTGYVIMLGDSPVVWASNLQTAVSTSTMEADYLALRSAVKDIMWIRYLLVDLG 405
            + +MVG L W+A   RP+L FA   L RFQ+ P P+H +AA+R  R L+ T   + + + G D I  L  + D+DF  D +  +S TG+V  +  +P+ WAS LQ +VS ST+EA+Y+AL   +++ +W+R LL +LG
Sbjct:  927 FAAMVGCLKWIAQTIRPDLMFACGVLSRFQARPMPEHMDAAKRTMRFLRKTADEDLVYQPGTDSIPRLAGFADADFAGDTETSRSTTGFVFYIHGNPISWASRLQVSVSMSTVEAEYIALAEGLREGLWLRNLLSELG 1064          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1202.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK3.300e-6474.81Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y1P1_HETAK1.870e-2842.86Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A328KN85_9BACI2.120e-2843.66Uncharacterized protein (Fragment) n=1 Tax=Bacillu... [more]
A0A286UFH8_9AGAM6.420e-2843.88Uncharacterized protein n=2 Tax=Pyrrhoderma noxium... [more]
A0A0A9W6P7_LYGHE1.660e-2741.91Retrovirus-related Pol polyprotein from transposon... [more]
A0A177U0N4_9BASI7.810e-2742.75Integrase catalytic domain-containing protein n=2 ... [more]
A0A177U1E5_9BASI7.860e-2742.75Integrase catalytic domain-containing protein n=2 ... [more]
UPI001E278ED11.240e-2639.85secreted RxLR effector protein 161-like n=1 Tax=Ha... [more]
A0A2N5TK21_9BASI2.010e-2640.00Integrase catalytic domain-containing protein n=2 ... [more]
A0A177TL22_9BASI3.680e-2641.30Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1202contigH-akashiwo_Contig1202:169600..170004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog5297.GMQ_23310T0
PFAMsDUF5314,RVT_2,gag_pre-integrs,rve,zf-CCHC
Model size405
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.95e-24
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota,2YC45@29000|Pucciniomycotina
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size396
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387119.3841987-UTR-H-akashiwo_Contig1202:169599..1696081681387119.3841987-UTR-H-akashiwo_Contig1202:169599..169608Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1202 169600..169608 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387119.3934817-CDS-H-akashiwo_Contig1202:169608..1700041681387119.3934817-CDS-H-akashiwo_Contig1202:169608..170004Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1202 169609..170004 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1202.6.1prot_H-akashiwo_Contig1202.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1202 169609..170004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1202.6.1

>prot_H-akashiwo_Contig1202.6.1 ID=prot_H-akashiwo_Contig1202.6.1|Name=mRNA_H-akashiwo_Contig1202.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=132bp
MVGTLAWLANWTRPELTFAVDKLQRFQSNPEPKHFEAAQRVFRCLKGTHQ
SEKLRLGGDLILRAYTDSDFCQDRQKGKSVTGYVIMLGDSPVVWASNLQT
AVSTSTMEADYLALRSAVKDIMWIRYLLVDLG
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mRNA from alignment at H-akashiwo_Contig1202:169600..170004+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1202.6.1 ID=mRNA_H-akashiwo_Contig1202.6.1|Name=mRNA_H-akashiwo_Contig1202.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=405bp|location=Sequence derived from alignment at H-akashiwo_Contig1202:169600..170004+ (Heterosigma akashiwo CCMP452)
TATTGTTCCATGGTTGGGACTTTGGCGTGGCTGGCTAACTGGACCAGGCC CGAGCTTACCTTTGCTGTGGACAAGCTTCAGAGGTTTCAGAGTAACCCTG AGCCTAAGCACTTCGAGGCAGCTCAGCGTGTTTTTCGATGTCTCAAAGGC ACCCACCAGTCTGAAAAGCTGAGGCTTGGTGGAGATCTCATCCTTCGAGC CTACACTGACTCTGATTTCTGCCAAGACAGGCAAAAGGGCAAGTCAGTAA CTGGCTATGTGATTATGCTTGGTGACTCACCTGTTGTGTGGGCCTCAAAC CTTCAAACTGCAGTCAGTACATCTACTATGGAGGCTGACTATCTGGCACT GAGGTCTGCTGTGAAGGATATCATGTGGATAAGGTATCTTCTTGTGGACC TTGGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1202:169600..170004+

>mRNA_H-akashiwo_Contig1202.6.1 ID=mRNA_H-akashiwo_Contig1202.6.1|Name=mRNA_H-akashiwo_Contig1202.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=396bp|location=Sequence derived from alignment at H-akashiwo_Contig1202:169600..170004+ (Heterosigma akashiwo CCMP452)
ATGGTTGGGACTTTGGCGTGGCTGGCTAACTGGACCAGGCCCGAGCTTAC
CTTTGCTGTGGACAAGCTTCAGAGGTTTCAGAGTAACCCTGAGCCTAAGC
ACTTCGAGGCAGCTCAGCGTGTTTTTCGATGTCTCAAAGGCACCCACCAG
TCTGAAAAGCTGAGGCTTGGTGGAGATCTCATCCTTCGAGCCTACACTGA
CTCTGATTTCTGCCAAGACAGGCAAAAGGGCAAGTCAGTAACTGGCTATG
TGATTATGCTTGGTGACTCACCTGTTGTGTGGGCCTCAAACCTTCAAACT
GCAGTCAGTACATCTACTATGGAGGCTGACTATCTGGCACTGAGGTCTGC
TGTGAAGGATATCATGTGGATAAGGTATCTTCTTGTGGACCTTGGC
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