mRNA_H-akashiwo_Contig1202.11.1 (mRNA) Heterosigma akashiwo CCMP452
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Overview
Homology
BLAST of mRNA_H-akashiwo_Contig1202.11.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK) HSP 1 Score: 347 bits (891), Expect = 8.910e-119 Identity = 180/248 (72.58%), Postives = 192/248 (77.42%), Query Frame = 1
Query: 1 LLLAISANKGYAVDSLDISTAFLNGAMTDNVYVRQPPGYVDPQHPNK-------------------------------------------------LMIAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALTKFGLDYLPACATPMDHTVDLTPTPGFKAKLSDANMYRSMVGTLAWVANWTRPELAFTVHKLQPTQHDPEPKHFEAAERAFRYL 597
LLLAISANKGYAVDSLDISTAFLNGAMTD+VYVRQPP YVDPQHPNK LM+AVYVDDLV+SGSS A+VS+FKQSLASKY+LTDQGELTQILGIKVVRDKRNKCF+LSQTSFIKDAL KFGLDYLPAC TP+DHTVDLTPTPGFKA+LSDAN+YRSMVGTLAWVANWTRPELAFTVHKLQ TQ +PEPKHFEA +RAFRYL
Sbjct: 21 LLLAISANKGYAVDSLDISTAFLNGAMTDDVYVRQPPSYVDPQHPNKVWKLNKALYGLKQSPRVWYMELHDHLESLGFKRSGHESCLYIHRDGGNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268
BLAST of mRNA_H-akashiwo_Contig1202.11.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK) HSP 1 Score: 327 bits (839), Expect = 1.310e-109 Identity = 160/185 (86.49%), Postives = 172/185 (92.97%), Query Frame = 1
Query: 115 YVDPQHPNKLMIAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALTKFGLDYLPACATPMDHTVDLTPTPGFKAKLSDANMYRSMVGTLAWVANWTRPELAFTVHKLQPTQHDPEPKHFEAAERAFRYLKGTQSESLRLGGDLVLRAFSDLDF 669
Y+ N+LM+AVYVDDLV+SGSS A+VS+FKQSLASKY LTDQGELTQILGIKVVRDKRNKCF+LSQTSFIKDAL KFGLDYLPAC TP+DHTVDLTPTPGFKA+LSDAN+YRSMVGTLAWVANWTRPELAFTVHKLQ TQ +PEPKHFEA +RAFRYLKGTQSESLRLGGDLVLRAFSD DF
Sbjct: 22 YIHRDGGNELMVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDF 206
BLAST of mRNA_H-akashiwo_Contig1202.11.1 vs. uniprot
Match: A0A7S3Y3B6_HETAK (Hypothetical protein (Fragment) n=6 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3B6_HETAK) HSP 1 Score: 186 bits (473), Expect = 9.220e-54 Identity = 98/201 (48.76%), Postives = 123/201 (61.19%), Query Frame = 1
Query: 1 LLLAISANKGYAVDSLDISTAFLNGAMTDNVYVRQPPGYVDPQHPNKL---------------------------------------------------MIAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALTKFGLDYLPACATPMDHTVDLTPTPGFKAKLSDAN 450
L+L+I+ANKG+AV++LDISTAFLN + +VYV+QPPG+VD HP+K+ M+AVYVDDLV+S + P++VS K S S++ +TD G LT ILGIKV RD NKCFYLSQ SF++DA++KFGLDYLPAC TPM + DLTPTPGFKA L DAN
Sbjct: 209 LMLSIAANKGHAVEALDISTAFLNSDIDGDVYVKQPPGFVDKDHPHKVWKLKKALYGLRQSPRLWYNTLHEFLLQQNFVRSDYESCLYTRKNSVTGEDTMVAVYVDDLVLSSNIPSVVSSLKSSFVSRFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFVRDAISKFGLDYLPACRTPMTNATDLTPTPGFKASLPDAN 409
BLAST of mRNA_H-akashiwo_Contig1202.11.1 vs. uniprot
Match: A0A5A7UWJ4_CUCME (Putative mitochondrial protein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7UWJ4_CUCME) HSP 1 Score: 142 bits (357), Expect = 4.590e-36 Identity = 79/237 (33.33%), Postives = 128/237 (54.01%), Query Frame = 1
Query: 4 LLAISANKGYAVDSLDISTAFLNGAMTDNVYVRQPPGYVDPQHPNK-------------LMIAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALTKFGLDYLPACATPMDHTVDLTPTPGFKAKLSDANMYRSMVGTLAWVANWTRPELAFTVHKLQPTQHDPEPKHFEAAERAFRYLKGTQSESLRLGGD--LVLRAFSDLDF 669
LLA++A K + + +D+ AFLNG +++ VY++ PPG P H + +++ +YVDD++++G+ P +SD + L +++ D G L LG++V R R+ + LSQ + D L + G+ +TP+D V LTP G L D ++YR +VG+L ++ TRP++A+ VH + P HF A R RY+KGT L+ LVL +SD D+
Sbjct: 255 LLAVAAAKQWPLLQMDVKNAFLNGTLSEEVYMKPPPGTSSPPHKSHDTALFTHHTPQGIVLLLLYVDDMIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSR--RSDGYLLSQAKYASDLLARSGITDSNTTSTPLDPNVHLTPYDG--VPLKDVSLYRQLVGSLIYLTV-TRPDIAYAVHIVSQFMAAPRTVHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSGYSDADW 486
BLAST of mRNA_H-akashiwo_Contig1202.11.1 vs. uniprot
Match: A0A5E4GHX7_PRUDU (PREDICTED: Retrovirus-related Pol poly from transposon (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GHX7_PRUDU) HSP 1 Score: 134 bits (337), Expect = 5.550e-35 Identity = 77/230 (33.48%), Postives = 130/230 (56.52%), Query Frame = 1
Query: 4 LLAISANKGYAVDSLDISTAFLNGAMTDNVYVRQPPGYVDPQHPNK------LMIAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALTKFGLDYLPACATPMDHTVDLTPTPGFKAKLSDANMYRSMVGTLAWVANWTRPELAFTVHKLQPTQHDPEPKHFEAAERAFRYLKGTQSESLRL--GGDLVLRAFSDLDF 669
L+A++A + + + LD+ +AFLNG + + VYV QP G+V +K L++++YVDD++ +GSS +++ FK + +Y++TD G L LG+ V++ + C +L Q + K L KFGL + ATP+ L+ G ++L+D +YR MVG+L ++ TRP++ F L H+P KH A+R RY++GT + + G +L + D D+
Sbjct: 35 LVAVAAQRNWNLFQLDVKSAFLNGVLNEEVYVDQPSGFVMQGSEDKMSTSGILIVSLYVDDIIYTGSSKEMMAAFKDDMMRQYEMTDLGLLHHFLGLGVLQT--DSCIFLHQKKYAKTLLDKFGLKDCKSVATPLAVNEKLSKVDG--SELADETLYRQMVGSLLYLTA-TRPDIMFAASLLARFMHNPTKKHMGTAKRVLRYVQGTINYGIAYDKGKGAMLIGYCDSDW 259
BLAST of mRNA_H-akashiwo_Contig1202.11.1 vs. uniprot
Match: A0A6D2HVH8_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HVH8_9BRAS) HSP 1 Score: 136 bits (342), Expect = 1.630e-34 Identity = 89/274 (32.48%), Postives = 135/274 (49.27%), Query Frame = 1
Query: 1 LLLAISANKGYAVDSLDISTAFLNGAMTDNVYVRQPPGYVDPQHPNK-------------------------------------------------LMIAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALTKFGLDYLPACATPMDHTVDLTPTPGFKAKLSDANMYRSMVGTLAWVANWTRPELAFTVHKLQPTQHDPEPKHFEAAERAFRYLKGTQSES--LRLGGDLVLRAFSDLDF 669
L LA+S N + + LD++ AFL G +TD VYV QPPG++D P+ L VYVDD++V+GSS ALV F +++S++ L D +L+ LGI+ R ++ +L Q +I D LT+ + ATPM T L+ F + L D + YR+++G+L ++ +TRP++A+ V++L H P +H+ AA+R RYL GT S LR L L A+SD D+
Sbjct: 36 LQLAVSCN--WDIKQLDVNNAFLQGTLTDEVYVTQPPGFIDKDRPDHACRLHKALYGLKQAPRAWYQELRNYLLALGFQNSLADTSVFVYSKGADLLYTLVYVDDIIVTGSSTALVDRFIAAISSRFSLKDPTDLSYFLGIEATRSQKG--LHLMQRKYIIDLLTRTNMLNSKPVATPMSPTPKLSLN--FGSPLDDPSQYRTVIGSLQYLG-YTRPDIAYAVNRLSQFMHRPTDEHWNAAKRVLRYLAGTASHGFFLRANNPLTLHAYSDADW 302
BLAST of mRNA_H-akashiwo_Contig1202.11.1 vs. uniprot
Match: A0A438HY32_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HY32_VITVI) HSP 1 Score: 139 bits (350), Expect = 3.080e-34 Identity = 87/245 (35.51%), Postives = 131/245 (53.47%), Query Frame = 1
Query: 1 LLLAISANKGYAVDSLDISTAFLNGAMTDNVYVRQPPGYVDPQHPNK--------------------LMIAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALTKFGLDYLPACATPMDHTVDLTPTPGFKAKLSDANMYRSMVGTLAWVANWTRPELAFTVHKLQPTQHDPEPKHFEAAERAFRYLKGTQSESLRL--GGDLVLRAFSDLDF 669
++L I+ + + + LD+ AFLNG + + VY+ QPPG++ P HPNK L++ VYVDD++V+GSSP L+ L S + L D G+L+ LGI+V D + +LSQ +I D L + + A ATP TV L + + D MYRS+VG L + A TRP++AF+V+K H P H+ + +R RYLKGT + L L ++A++D D+
Sbjct: 590 IVLTITLSYRWELRQLDVQNAFLNGDLVEQVYMAQPPGFLHPNHPNKGFNSSRTDSSMFVHFGRHSTLIVLVYVDDIIVTGSSPILIQQLIHKLHSLFALRDLGQLSYFLGIEVTYDGGS--LHLSQRKYITDLLQRTSMLDSKAAATP--GTVGLFLSQFDGDLMDDVTMYRSVVGALQY-ATLTRPDIAFSVNKACQFMHRPTSTHWSSIKRILRYLKGTITHGLLLQPSAHFTIQAYTDADW 829
BLAST of mRNA_H-akashiwo_Contig1202.11.1 vs. uniprot
Match: UPI000901B58E (uncharacterized protein LOC109176402 n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI000901B58E) HSP 1 Score: 133 bits (334), Expect = 6.810e-34 Identity = 80/243 (32.92%), Postives = 128/243 (52.67%), Query Frame = 1
Query: 1 LLLAISANKGYAVDSLDISTAFLNGAMTDNVYVRQPPGYVDPQHPNKLM------------------IAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALTKFGLDYLPACATPMDHTVDLTPTPGFKAKLSDANMYRSMVGTLAWVANWTRPELAFTVHKLQPTQHDPEPKHFEAAERAFRYLKGTQSESLRL--GGDLVLRAFSDLDF 669
LL +++ + + + LD+ AFLNG + + VY++QPPGY +P HP+ + VYVDD+++ G+ P L+S+ Q L++ + + D G + LGIK ++DK F LSQ ++KD L + G+ ATP T +TP+ + YR +VG L ++ TRP+L+F+V++L H P H+ +R RY+KGT + LRL + FSD D+
Sbjct: 77 LLFSLAVSHDWTMRQLDVHNAFLNGHLPETVYMKQPPGYENPTHPDHVCHLQRSLYDVSLFHYSTGSSRVYVDDIIMMGNDPVLISELLQRLSTTFKIRDLGTPSFFLGIKTLKDKTG--FLLSQQRYMKDILNRAGMSDCKPLATPAAITQPVTPSD---QPYDNPTQYRRLVGALQYLTV-TRPDLSFSVNRLCQFMHLPSNDHWGLLKRVPRYIKGTITYGLRLTASASSTIHGFSDSDW 313
BLAST of mRNA_H-akashiwo_Contig1202.11.1 vs. uniprot
Match: A0A438ITJ3_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438ITJ3_VITVI) HSP 1 Score: 137 bits (345), Expect = 1.460e-33 Identity = 81/236 (34.32%), Postives = 135/236 (57.20%), Query Frame = 1
Query: 1 LLLAISANKGYAVDSLDISTAFLNGAMTDNVYVRQPPGYVDPQHPN---KLMIAVY--------VDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALTKFGLDYLPACATPMDHTVDLTPTPGFKAKLSDANMYRSMVGTLAWVANWTRPELAFTVHKLQPTQHDPEPKHFEAAERAFRYLKGTQSE--SLRLGGDLVLRAFSDLDF 669
L+L+++ ++G+++ LD++ AFL G +T++V++ QPPG++D HP+ KL A+Y VDD++++G++ + F Q L+ ++ L D G LT LG++V +LSQ +I D L + + + TP+ + LT + LSD +R++VG+L ++ TRP++A+TV+KL H P H+ A +R RYL GT +LR L L AFSD D+
Sbjct: 729 LVLSLAVSQGWSLRQLDVNNAFLQGTLTEDVFMSQPPGFIDRDHPHHVCKLRKAIYGLKQAPLYVDDIIITGNNVEVAQTFIQQLSQRFSLKDLGPLTYFLGVEVTSHTNG--LFLSQRKYIADLLNRTHMTEVKPAPTPLATSQILTLQ--LETPLSDPIEHRTVVGSLQHLS-LTRPDIAYTVNKLSKFMHQPTSDHWNAVKRLLRYLYGTLDHDITLRRTSPLALHAFSDSDW 959
BLAST of mRNA_H-akashiwo_Contig1202.11.1 vs. uniprot
Match: A0A438CIR2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CIR2_VITVI) HSP 1 Score: 137 bits (344), Expect = 1.900e-33 Identity = 85/238 (35.71%), Postives = 134/238 (56.30%), Query Frame = 1
Query: 1 LLLAISANKGYAVDSLDISTAFLNGAMTDNVYVRQPPGYVDPQHP-------------NKLMIAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALTKFGLDYLPACATPMDHTVDLTPTPGFKAKLSDANMYRSMVGTLAWVANWTRPELAFTVHKLQPTQHDPEPKHFEAAERAFRYLKGTQSESL--RLGGDLVLRAFSDLDF 669
++L+++ + G+ V LD+S AFLNG + + VY+ QPP +VD P + ++I +YVDD++V+GS+ LV SL S++ L D G L LG++V + +LSQT +I+D LT G A ATPM + L+ + G + L+D + Y S+VG L + TRP+++F+V+KL P H++A ++ RYLKGT S L DL A++D+D+
Sbjct: 607 IVLSLAISHGWLVKQLDVSNAFLNGELEEEVYMVQPPSFVDHSKPGFVCKLHKALYGTDVIIILIYVDDIIVTGSNTMLVHQVVSSLHSQFALKDLGILNYFLGVEVCW--QGYSLHLSQTKYIQDLLTHVGFVDCKAIATPMTASHTLSASKG--SLLADPSQYHSIVGALQY-CTITRPDISFSVNKLCQFMQSPTDLHWQAVKQLLRYLKGTTSFGLFFHSASDLQHTAYNDVDW 839 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1202.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig1202.11.1 >prot_H-akashiwo_Contig1202.11.1 ID=prot_H-akashiwo_Contig1202.11.1|Name=mRNA_H-akashiwo_Contig1202.11.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=223bp LLLAISANKGYAVDSLDISTAFLNGAMTDNVYVRQPPGYVDPQHPNKLMIback to top mRNA from alignment at H-akashiwo_Contig1202:281895..282710- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig1202.11.1 ID=mRNA_H-akashiwo_Contig1202.11.1|Name=mRNA_H-akashiwo_Contig1202.11.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=816bp|location=Sequence derived from alignment at H-akashiwo_Contig1202:281895..282710- (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig1202:281895..282710- >mRNA_H-akashiwo_Contig1202.11.1 ID=mRNA_H-akashiwo_Contig1202.11.1|Name=mRNA_H-akashiwo_Contig1202.11.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=669bp|location=Sequence derived from alignment at H-akashiwo_Contig1202:281895..282710- (Heterosigma akashiwo CCMP452)back to top |