mRNA_H-akashiwo_Contig1202.11.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1202.11.1
Unique NamemRNA_H-akashiwo_Contig1202.11.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1202.11.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 347 bits (891), Expect = 8.910e-119
Identity = 180/248 (72.58%), Postives = 192/248 (77.42%), Query Frame = 1
Query:    1 LLLAISANKGYAVDSLDISTAFLNGAMTDNVYVRQPPGYVDPQHPNK-------------------------------------------------LMIAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALTKFGLDYLPACATPMDHTVDLTPTPGFKAKLSDANMYRSMVGTLAWVANWTRPELAFTVHKLQPTQHDPEPKHFEAAERAFRYL 597
            LLLAISANKGYAVDSLDISTAFLNGAMTD+VYVRQPP YVDPQHPNK                                                 LM+AVYVDDLV+SGSS A+VS+FKQSLASKY+LTDQGELTQILGIKVVRDKRNKCF+LSQTSFIKDAL KFGLDYLPAC TP+DHTVDLTPTPGFKA+LSDAN+YRSMVGTLAWVANWTRPELAFTVHKLQ TQ +PEPKHFEA +RAFRYL
Sbjct:   21 LLLAISANKGYAVDSLDISTAFLNGAMTDDVYVRQPPSYVDPQHPNKVWKLNKALYGLKQSPRVWYMELHDHLESLGFKRSGHESCLYIHRDGGNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268          
BLAST of mRNA_H-akashiwo_Contig1202.11.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 327 bits (839), Expect = 1.310e-109
Identity = 160/185 (86.49%), Postives = 172/185 (92.97%), Query Frame = 1
Query:  115 YVDPQHPNKLMIAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALTKFGLDYLPACATPMDHTVDLTPTPGFKAKLSDANMYRSMVGTLAWVANWTRPELAFTVHKLQPTQHDPEPKHFEAAERAFRYLKGTQSESLRLGGDLVLRAFSDLDF 669
            Y+     N+LM+AVYVDDLV+SGSS A+VS+FKQSLASKY LTDQGELTQILGIKVVRDKRNKCF+LSQTSFIKDAL KFGLDYLPAC TP+DHTVDLTPTPGFKA+LSDAN+YRSMVGTLAWVANWTRPELAFTVHKLQ TQ +PEPKHFEA +RAFRYLKGTQSESLRLGGDLVLRAFSD DF
Sbjct:   22 YIHRDGGNELMVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDF 206          
BLAST of mRNA_H-akashiwo_Contig1202.11.1 vs. uniprot
Match: A0A7S3Y3B6_HETAK (Hypothetical protein (Fragment) n=6 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3B6_HETAK)

HSP 1 Score: 186 bits (473), Expect = 9.220e-54
Identity = 98/201 (48.76%), Postives = 123/201 (61.19%), Query Frame = 1
Query:    1 LLLAISANKGYAVDSLDISTAFLNGAMTDNVYVRQPPGYVDPQHPNKL---------------------------------------------------MIAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALTKFGLDYLPACATPMDHTVDLTPTPGFKAKLSDAN 450
            L+L+I+ANKG+AV++LDISTAFLN  +  +VYV+QPPG+VD  HP+K+                                                   M+AVYVDDLV+S + P++VS  K S  S++ +TD G LT ILGIKV RD  NKCFYLSQ SF++DA++KFGLDYLPAC TPM +  DLTPTPGFKA L DAN
Sbjct:  209 LMLSIAANKGHAVEALDISTAFLNSDIDGDVYVKQPPGFVDKDHPHKVWKLKKALYGLRQSPRLWYNTLHEFLLQQNFVRSDYESCLYTRKNSVTGEDTMVAVYVDDLVLSSNIPSVVSSLKSSFVSRFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFVRDAISKFGLDYLPACRTPMTNATDLTPTPGFKASLPDAN 409          
BLAST of mRNA_H-akashiwo_Contig1202.11.1 vs. uniprot
Match: A0A5A7UWJ4_CUCME (Putative mitochondrial protein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7UWJ4_CUCME)

HSP 1 Score: 142 bits (357), Expect = 4.590e-36
Identity = 79/237 (33.33%), Postives = 128/237 (54.01%), Query Frame = 1
Query:    4 LLAISANKGYAVDSLDISTAFLNGAMTDNVYVRQPPGYVDPQHPNK-------------LMIAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALTKFGLDYLPACATPMDHTVDLTPTPGFKAKLSDANMYRSMVGTLAWVANWTRPELAFTVHKLQPTQHDPEPKHFEAAERAFRYLKGTQSESLRLGGD--LVLRAFSDLDF 669
            LLA++A K + +  +D+  AFLNG +++ VY++ PPG   P H +              +++ +YVDD++++G+ P  +SD +  L   +++ D G L   LG++V R  R+  + LSQ  +  D L + G+      +TP+D  V LTP  G    L D ++YR +VG+L ++   TRP++A+ VH +      P   HF A  R  RY+KGT    L+      LVL  +SD D+
Sbjct:  255 LLAVAAAKQWPLLQMDVKNAFLNGTLSEEVYMKPPPGTSSPPHKSHDTALFTHHTPQGIVLLLLYVDDMIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSR--RSDGYLLSQAKYASDLLARSGITDSNTTSTPLDPNVHLTPYDG--VPLKDVSLYRQLVGSLIYLTV-TRPDIAYAVHIVSQFMAAPRTVHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSGYSDADW 486          
BLAST of mRNA_H-akashiwo_Contig1202.11.1 vs. uniprot
Match: A0A5E4GHX7_PRUDU (PREDICTED: Retrovirus-related Pol poly from transposon (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GHX7_PRUDU)

HSP 1 Score: 134 bits (337), Expect = 5.550e-35
Identity = 77/230 (33.48%), Postives = 130/230 (56.52%), Query Frame = 1
Query:    4 LLAISANKGYAVDSLDISTAFLNGAMTDNVYVRQPPGYVDPQHPNK------LMIAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALTKFGLDYLPACATPMDHTVDLTPTPGFKAKLSDANMYRSMVGTLAWVANWTRPELAFTVHKLQPTQHDPEPKHFEAAERAFRYLKGTQSESLRL--GGDLVLRAFSDLDF 669
            L+A++A + + +  LD+ +AFLNG + + VYV QP G+V     +K      L++++YVDD++ +GSS  +++ FK  +  +Y++TD G L   LG+ V++   + C +L Q  + K  L KFGL    + ATP+     L+   G  ++L+D  +YR MVG+L ++   TRP++ F    L    H+P  KH   A+R  RY++GT +  +    G   +L  + D D+
Sbjct:   35 LVAVAAQRNWNLFQLDVKSAFLNGVLNEEVYVDQPSGFVMQGSEDKMSTSGILIVSLYVDDIIYTGSSKEMMAAFKDDMMRQYEMTDLGLLHHFLGLGVLQT--DSCIFLHQKKYAKTLLDKFGLKDCKSVATPLAVNEKLSKVDG--SELADETLYRQMVGSLLYLTA-TRPDIMFAASLLARFMHNPTKKHMGTAKRVLRYVQGTINYGIAYDKGKGAMLIGYCDSDW 259          
BLAST of mRNA_H-akashiwo_Contig1202.11.1 vs. uniprot
Match: A0A6D2HVH8_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HVH8_9BRAS)

HSP 1 Score: 136 bits (342), Expect = 1.630e-34
Identity = 89/274 (32.48%), Postives = 135/274 (49.27%), Query Frame = 1
Query:    1 LLLAISANKGYAVDSLDISTAFLNGAMTDNVYVRQPPGYVDPQHPNK-------------------------------------------------LMIAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALTKFGLDYLPACATPMDHTVDLTPTPGFKAKLSDANMYRSMVGTLAWVANWTRPELAFTVHKLQPTQHDPEPKHFEAAERAFRYLKGTQSES--LRLGGDLVLRAFSDLDF 669
            L LA+S N  + +  LD++ AFL G +TD VYV QPPG++D   P+                                                  L   VYVDD++V+GSS ALV  F  +++S++ L D  +L+  LGI+  R ++    +L Q  +I D LT+  +      ATPM  T  L+    F + L D + YR+++G+L ++  +TRP++A+ V++L    H P  +H+ AA+R  RYL GT S    LR    L L A+SD D+
Sbjct:   36 LQLAVSCN--WDIKQLDVNNAFLQGTLTDEVYVTQPPGFIDKDRPDHACRLHKALYGLKQAPRAWYQELRNYLLALGFQNSLADTSVFVYSKGADLLYTLVYVDDIIVTGSSTALVDRFIAAISSRFSLKDPTDLSYFLGIEATRSQKG--LHLMQRKYIIDLLTRTNMLNSKPVATPMSPTPKLSLN--FGSPLDDPSQYRTVIGSLQYLG-YTRPDIAYAVNRLSQFMHRPTDEHWNAAKRVLRYLAGTASHGFFLRANNPLTLHAYSDADW 302          
BLAST of mRNA_H-akashiwo_Contig1202.11.1 vs. uniprot
Match: A0A438HY32_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HY32_VITVI)

HSP 1 Score: 139 bits (350), Expect = 3.080e-34
Identity = 87/245 (35.51%), Postives = 131/245 (53.47%), Query Frame = 1
Query:    1 LLLAISANKGYAVDSLDISTAFLNGAMTDNVYVRQPPGYVDPQHPNK--------------------LMIAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALTKFGLDYLPACATPMDHTVDLTPTPGFKAKLSDANMYRSMVGTLAWVANWTRPELAFTVHKLQPTQHDPEPKHFEAAERAFRYLKGTQSESLRL--GGDLVLRAFSDLDF 669
            ++L I+ +  + +  LD+  AFLNG + + VY+ QPPG++ P HPNK                    L++ VYVDD++V+GSSP L+      L S + L D G+L+  LGI+V  D  +   +LSQ  +I D L +  +    A ATP   TV L  +      + D  MYRS+VG L + A  TRP++AF+V+K     H P   H+ + +R  RYLKGT +  L L       ++A++D D+
Sbjct:  590 IVLTITLSYRWELRQLDVQNAFLNGDLVEQVYMAQPPGFLHPNHPNKGFNSSRTDSSMFVHFGRHSTLIVLVYVDDIIVTGSSPILIQQLIHKLHSLFALRDLGQLSYFLGIEVTYDGGS--LHLSQRKYITDLLQRTSMLDSKAAATP--GTVGLFLSQFDGDLMDDVTMYRSVVGALQY-ATLTRPDIAFSVNKACQFMHRPTSTHWSSIKRILRYLKGTITHGLLLQPSAHFTIQAYTDADW 829          
BLAST of mRNA_H-akashiwo_Contig1202.11.1 vs. uniprot
Match: UPI000901B58E (uncharacterized protein LOC109176402 n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI000901B58E)

HSP 1 Score: 133 bits (334), Expect = 6.810e-34
Identity = 80/243 (32.92%), Postives = 128/243 (52.67%), Query Frame = 1
Query:    1 LLLAISANKGYAVDSLDISTAFLNGAMTDNVYVRQPPGYVDPQHPNKLM------------------IAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALTKFGLDYLPACATPMDHTVDLTPTPGFKAKLSDANMYRSMVGTLAWVANWTRPELAFTVHKLQPTQHDPEPKHFEAAERAFRYLKGTQSESLRL--GGDLVLRAFSDLDF 669
            LL +++ +  + +  LD+  AFLNG + + VY++QPPGY +P HP+ +                     VYVDD+++ G+ P L+S+  Q L++ + + D G  +  LGIK ++DK    F LSQ  ++KD L + G+      ATP   T  +TP+        +   YR +VG L ++   TRP+L+F+V++L    H P   H+   +R  RY+KGT +  LRL       +  FSD D+
Sbjct:   77 LLFSLAVSHDWTMRQLDVHNAFLNGHLPETVYMKQPPGYENPTHPDHVCHLQRSLYDVSLFHYSTGSSRVYVDDIIMMGNDPVLISELLQRLSTTFKIRDLGTPSFFLGIKTLKDKTG--FLLSQQRYMKDILNRAGMSDCKPLATPAAITQPVTPSD---QPYDNPTQYRRLVGALQYLTV-TRPDLSFSVNRLCQFMHLPSNDHWGLLKRVPRYIKGTITYGLRLTASASSTIHGFSDSDW 313          
BLAST of mRNA_H-akashiwo_Contig1202.11.1 vs. uniprot
Match: A0A438ITJ3_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438ITJ3_VITVI)

HSP 1 Score: 137 bits (345), Expect = 1.460e-33
Identity = 81/236 (34.32%), Postives = 135/236 (57.20%), Query Frame = 1
Query:    1 LLLAISANKGYAVDSLDISTAFLNGAMTDNVYVRQPPGYVDPQHPN---KLMIAVY--------VDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALTKFGLDYLPACATPMDHTVDLTPTPGFKAKLSDANMYRSMVGTLAWVANWTRPELAFTVHKLQPTQHDPEPKHFEAAERAFRYLKGTQSE--SLRLGGDLVLRAFSDLDF 669
            L+L+++ ++G+++  LD++ AFL G +T++V++ QPPG++D  HP+   KL  A+Y        VDD++++G++  +   F Q L+ ++ L D G LT  LG++V         +LSQ  +I D L +  +  +    TP+  +  LT     +  LSD   +R++VG+L  ++  TRP++A+TV+KL    H P   H+ A +R  RYL GT     +LR    L L AFSD D+
Sbjct:  729 LVLSLAVSQGWSLRQLDVNNAFLQGTLTEDVFMSQPPGFIDRDHPHHVCKLRKAIYGLKQAPLYVDDIIITGNNVEVAQTFIQQLSQRFSLKDLGPLTYFLGVEVTSHTNG--LFLSQRKYIADLLNRTHMTEVKPAPTPLATSQILTLQ--LETPLSDPIEHRTVVGSLQHLS-LTRPDIAYTVNKLSKFMHQPTSDHWNAVKRLLRYLYGTLDHDITLRRTSPLALHAFSDSDW 959          
BLAST of mRNA_H-akashiwo_Contig1202.11.1 vs. uniprot
Match: A0A438CIR2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CIR2_VITVI)

HSP 1 Score: 137 bits (344), Expect = 1.900e-33
Identity = 85/238 (35.71%), Postives = 134/238 (56.30%), Query Frame = 1
Query:    1 LLLAISANKGYAVDSLDISTAFLNGAMTDNVYVRQPPGYVDPQHP-------------NKLMIAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRNKCFYLSQTSFIKDALTKFGLDYLPACATPMDHTVDLTPTPGFKAKLSDANMYRSMVGTLAWVANWTRPELAFTVHKLQPTQHDPEPKHFEAAERAFRYLKGTQSESL--RLGGDLVLRAFSDLDF 669
            ++L+++ + G+ V  LD+S AFLNG + + VY+ QPP +VD   P             + ++I +YVDD++V+GS+  LV     SL S++ L D G L   LG++V    +    +LSQT +I+D LT  G     A ATPM  +  L+ + G  + L+D + Y S+VG L +    TRP+++F+V+KL      P   H++A ++  RYLKGT S  L      DL   A++D+D+
Sbjct:  607 IVLSLAISHGWLVKQLDVSNAFLNGELEEEVYMVQPPSFVDHSKPGFVCKLHKALYGTDVIIILIYVDDIIVTGSNTMLVHQVVSSLHSQFALKDLGILNYFLGVEVCW--QGYSLHLSQTKYIQDLLTHVGFVDCKAIATPMTASHTLSASKG--SLLADPSQYHSIVGALQY-CTITRPDISFSVNKLCQFMQSPTDLHWQAVKQLLRYLKGTTSFGLFFHSASDLQHTAYNDVDW 839          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1202.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y6S2_HETAK8.910e-11972.58Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S4DD78_HETAK1.310e-10986.49Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y3B6_HETAK9.220e-5448.76Hypothetical protein (Fragment) n=6 Tax=Heterosigm... [more]
A0A5A7UWJ4_CUCME4.590e-3633.33Putative mitochondrial protein n=1 Tax=Cucumis mel... [more]
A0A5E4GHX7_PRUDU5.550e-3533.48PREDICTED: Retrovirus-related Pol poly from transp... [more]
A0A6D2HVH8_9BRAS1.630e-3432.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438HY32_VITVI3.080e-3435.51Retrovirus-related Pol polyprotein from transposon... [more]
UPI000901B58E6.810e-3432.92uncharacterized protein LOC109176402 n=1 Tax=Ipomo... [more]
A0A438ITJ3_VITVI1.460e-3334.32Retrovirus-related Pol polyprotein from transposon... [more]
A0A438CIR2_VITVI1.900e-3335.71Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1202contigH-akashiwo_Contig1202:281895..282710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3750.XP_008361413.1
PFAMs2OG-FeII_Oxy,DIOX_N
Model size669
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.18e-32
EggNOG OGsCOG2801@1|root,COG3491@1|root,KOG0017@2759|Eukaryota,KOG0143@2759|Eukaryota
Descriptionoxidoreductase activity
Cds size669
COG categoryV
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387119.6033876-CDS-H-akashiwo_Contig1202:281894..2824221681387119.6033876-CDS-H-akashiwo_Contig1202:281894..282422Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1202 281895..282422 -
1681387119.6245215-CDS-H-akashiwo_Contig1202:282569..2827101681387119.6245215-CDS-H-akashiwo_Contig1202:282569..282710Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1202 282570..282710 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1202.11.1prot_H-akashiwo_Contig1202.11.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1202 281895..282710 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1202.11.1

>prot_H-akashiwo_Contig1202.11.1 ID=prot_H-akashiwo_Contig1202.11.1|Name=mRNA_H-akashiwo_Contig1202.11.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=223bp
LLLAISANKGYAVDSLDISTAFLNGAMTDNVYVRQPPGYVDPQHPNKLMI
AVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRN
KCFYLSQTSFIKDALTKFGLDYLPACATPMDHTVDLTPTPGFKAKLSDAN
MYRSMVGTLAWVANWTRPELAFTVHKLQPTQHDPEPKHFEAAERAFRYLK
GTQSESLRLGGDLVLRAFSDLDF
back to top

mRNA from alignment at H-akashiwo_Contig1202:281895..282710-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1202.11.1 ID=mRNA_H-akashiwo_Contig1202.11.1|Name=mRNA_H-akashiwo_Contig1202.11.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=816bp|location=Sequence derived from alignment at H-akashiwo_Contig1202:281895..282710- (Heterosigma akashiwo CCMP452)
CTGCTGCTGGCTATTTCCGCGAACAAAGGCTATGCAGTTGACTCTTTGGA CATTAGTACGGCCTTCCTGAATGGGGCTATGACCGACAATGTATACGTAC GCCAGCCGCCGGGTTATGTTGACCCTCAGCATCCCAATAAAGTTTGGAAA CTGAACAAAGCGCTGTACGGTCTCAAGCAAAGCCCAAGAGTGTGGTATAT GGAGTTGCATGATCATCTCTTGTCTCTGGGTTTTCAGCGTAGCGGGCATG AGTCCTGCTTGTATACCCGTCGCAATGGGGGCGATGAGTTGATGATAGCT GTGTACGTTGATGATTTGGTGGTTAGCGGCAGCTCTCCTGCTCTTGTCTC TGATTTCAAGCAGTCTCTTGCATCCAAGTACGATCTCACCGATCAGGGGG AACTTACTCAAATCCTCGGCATCAAAGTGGTTCGCGACAAACGCAACAAG TGCTTCTATCTCTCCCAAACCTCCTTCATAAAAGACGCGCTGACCAAGTT CGGGCTCGATTATCTGCCTGCGTGCGCGACACCTATGGACCACACTGTGG ATCTAACGCCTACCCCTGGTTTCAAGGCAAAACTCTCTGACGCGAATATG TACAGGTCTATGGTTGGTACGTTAGCCTGGGTTGCGAACTGGACAAGGCC GGAGCTAGCCTTTACGGTCCACAAACTTCAGCCCACTCAGCATGACCCTG AACCCAAACATTTCGAGGCGGCCGAGCGTGCATTTCGTTATCTTAAGGGT ACTCAATCTGAGTCGTTGCGTTTGGGAGGTGATCTAGTGCTGCGTGCGTT CTCTGATTTGGATTTC
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1202:281895..282710-

>mRNA_H-akashiwo_Contig1202.11.1 ID=mRNA_H-akashiwo_Contig1202.11.1|Name=mRNA_H-akashiwo_Contig1202.11.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=669bp|location=Sequence derived from alignment at H-akashiwo_Contig1202:281895..282710- (Heterosigma akashiwo CCMP452)
CTGCTGCTGGCTATTTCCGCGAACAAAGGCTATGCAGTTGACTCTTTGGA
CATTAGTACGGCCTTCCTGAATGGGGCTATGACCGACAATGTATACGTAC
GCCAGCCGCCGGGTTATGTTGACCCTCAGCATCCCAATAAATTGATGATA
GCTGTGTACGTTGATGATTTGGTGGTTAGCGGCAGCTCTCCTGCTCTTGT
CTCTGATTTCAAGCAGTCTCTTGCATCCAAGTACGATCTCACCGATCAGG
GGGAACTTACTCAAATCCTCGGCATCAAAGTGGTTCGCGACAAACGCAAC
AAGTGCTTCTATCTCTCCCAAACCTCCTTCATAAAAGACGCGCTGACCAA
GTTCGGGCTCGATTATCTGCCTGCGTGCGCGACACCTATGGACCACACTG
TGGATCTAACGCCTACCCCTGGTTTCAAGGCAAAACTCTCTGACGCGAAT
ATGTACAGGTCTATGGTTGGTACGTTAGCCTGGGTTGCGAACTGGACAAG
GCCGGAGCTAGCCTTTACGGTCCACAAACTTCAGCCCACTCAGCATGACC
CTGAACCCAAACATTTCGAGGCGGCCGAGCGTGCATTTCGTTATCTTAAG
GGTACTCAATCTGAGTCGTTGCGTTTGGGAGGTGATCTAGTGCTGCGTGC
GTTCTCTGATTTGGATTTC
back to top