mRNA_H-akashiwo_Contig120.22.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig120.22.1
Unique NamemRNA_H-akashiwo_Contig120.22.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig120.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig120contigH-akashiwo_Contig120:1239604..1240222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size216
Hectar predicted targeting categoryother localisation
Exons3
Cds size189
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387118.4130437-UTR-H-akashiwo_Contig120:1239603..12396301681387118.4130437-UTR-H-akashiwo_Contig120:1239603..1239630Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig120 1239604..1239630 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387118.4239097-CDS-H-akashiwo_Contig120:1239630..12396691681387118.4239097-CDS-H-akashiwo_Contig120:1239630..1239669Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig120 1239631..1239669 +
1681387118.4395957-CDS-H-akashiwo_Contig120:1239807..12398701681387118.4395957-CDS-H-akashiwo_Contig120:1239807..1239870Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig120 1239808..1239870 +
1681387118.450696-CDS-H-akashiwo_Contig120:1240135..12402221681387118.450696-CDS-H-akashiwo_Contig120:1240135..1240222Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig120 1240136..1240222 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig120.22.1prot_H-akashiwo_Contig120.22.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig120 1239631..1240222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig120.22.1

>prot_H-akashiwo_Contig120.22.1 ID=prot_H-akashiwo_Contig120.22.1|Name=mRNA_H-akashiwo_Contig120.22.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=63bp
MFLPARLLKEEHMLDLSNKASHRRTDPVAPNAYTGFLPPRAASRRNKEEP
PGRSKTSLTWSKQ
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mRNA from alignment at H-akashiwo_Contig120:1239604..1240222+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig120.22.1 ID=mRNA_H-akashiwo_Contig120.22.1|Name=mRNA_H-akashiwo_Contig120.22.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=619bp|location=Sequence derived from alignment at H-akashiwo_Contig120:1239604..1240222+ (Heterosigma akashiwo CCMP452)
CAAAAAGCTTGTAAAGTAAGACTGAAAATGTTTCTTCCTGCCAGATTGCT
CAAGGAAGAGCACATGGCAAGTCAAACACGCCCATTACCGCATCCTGGTA
TGACATTCAATATTTTTGAGATGAAGCTATACATCCCCACAACCCAAAAG
TATAGGTTCTTCATGTGTATATGGATTTGCGCTCTGTGTTATTGAACATT
TCAGCTCGACTTGAGTAACAAGGCCAGTCATAGAAGAACTGACCCAGTCG
CACCAAATGCTTACACGGTATGAGATCACTAGCCTCGTTTACTCCCCTTC
TTCCTTGCTTGCTCTCTTCCCTGCCCCCGCACATATAAACTTTGGCCCTT
TTTGCCTGGTAGTAGACTTGCTTGTTCGGTAACATTCAGCGCCAAAACTG
CCGGCGGGGAAATGCACCAGTGCAGTACACGCGCTAGATGCTTGTTCAGG
GTTCCTTATTGCTGTAGCCACATACCCTGTTATAATCTTTTTTGCATTGT
GCTTTTTGTTTTGAAACGACCACCTTCATCAGGGTTTCTTACCCCCACGA
GCAGCTTCGCGGAGGAATAAGGAGGAACCTCCTGGTAGAAGTAAAACTTC
ATTGACGTGGAGTAAACAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig120:1239604..1240222+

>mRNA_H-akashiwo_Contig120.22.1 ID=mRNA_H-akashiwo_Contig120.22.1|Name=mRNA_H-akashiwo_Contig120.22.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=189bp|location=Sequence derived from alignment at H-akashiwo_Contig120:1239604..1240222+ (Heterosigma akashiwo CCMP452)
ATGTTTCTTCCTGCCAGATTGCTCAAGGAAGAGCACATGCTCGACTTGAG
TAACAAGGCCAGTCATAGAAGAACTGACCCAGTCGCACCAAATGCTTACA
CGGGTTTCTTACCCCCACGAGCAGCTTCGCGGAGGAATAAGGAGGAACCT
CCTGGTAGAAGTAAAACTTCATTGACGTGGAGTAAACAG
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