mRNA_H-akashiwo_Contig12.45.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig12.45.1
Unique NamemRNA_H-akashiwo_Contig12.45.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig12.45.1 vs. uniprot
Match: A0A7S3XQS4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQS4_HETAK)

HSP 1 Score: 98.2 bits (243), Expect = 2.450e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VELAQCGVGAEGCRRLAGWLARPGAMLQSLDLAKNTIGEAGAQALALALVG 153
            VELAQCGVGAEGCRRLAGWLARPGAMLQSLDLAKNTIGEAGAQALALALVG
Sbjct:   78 VELAQCGVGAEGCRRLAGWLARPGAMLQSLDLAKNTIGEAGAQALALALVG 128
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BLAST of mRNA_H-akashiwo_Contig12.45.1 vs. uniprot
Match: A0A8J5XUE7_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XUE7_DIALT)

HSP 1 Score: 47.8 bits (112), Expect = 7.040e-5
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 VELAQCGVGAEGCRRLAGWLARPGAMLQSLDLAKNTIGEAGAQALALALVG 153
            +ELA CGV A    RLA  L+  GA LQSL L +N +G+AGA+A+A AL+G
Sbjct:  472 LELAACGVDARTGARLARALSAGGAALQSLSLRRNALGDAGAEAIARALLG 522
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig12.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3XQS4_HETAK2.450e-23100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8J5XUE7_DIALT7.040e-554.90Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig12contigH-akashiwo_Contig12:1697889..1698485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size153
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size153
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387114.9379282-CDS-H-akashiwo_Contig12:1697888..16979891681387114.9379282-CDS-H-akashiwo_Contig12:1697888..1697989Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 1697889..1697989 -
1681387114.9517863-CDS-H-akashiwo_Contig12:1698433..16984851681387114.9517863-CDS-H-akashiwo_Contig12:1698433..1698485Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 1698434..1698485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig12.45.1prot_H-akashiwo_Contig12.45.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig12 1697889..1698485 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig12.45.1

>prot_H-akashiwo_Contig12.45.1 ID=prot_H-akashiwo_Contig12.45.1|Name=mRNA_H-akashiwo_Contig12.45.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=51bp
VELAQCGVGAEGCRRLAGWLARPGAMLQSLDLAKNTIGEAGAQALALALV
G
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mRNA from alignment at H-akashiwo_Contig12:1697889..1698485-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig12.45.1 ID=mRNA_H-akashiwo_Contig12.45.1|Name=mRNA_H-akashiwo_Contig12.45.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=597bp|location=Sequence derived from alignment at H-akashiwo_Contig12:1697889..1698485- (Heterosigma akashiwo CCMP452)
GTGGAGCTTGCCCAGTGCGGGGTGGGGGCTGAAGGCTGCCGCCGACTGGC
AGGTGCAAGAGCGTGCTTGTTGCAATGATGCTAACAGAGATAATGGTGAC
CTAACGCATGGCAATAAAATGACGTGGCACCACCAAATCATCGCGACCAT
GCATGATTTTTCAAAAATATTTGAGACAAATGCACCACCTAGATCACATA
TACATGACCTCTTTTTTTCTGAAACATCAAAGCAGTACGTATGCACCTTA
TGCTGGTACATATTGCAATGATAAAAGATTCCCTATAAGCAAGGAGAAGG
AAAATGATAACTTTTTTTGAGGAAGCTAAAAGTGTTATGTATAATGTATG
ATGTCAAAAATGGCAGATGTCCAATAGCATTCTTCACATGCGCACAAGAA
CATATTTTTTATGTCATAGTATATATCATGTATACACACAGTGCATGCTG
GGATGATGTAGTAAGCAGCAACCTATAACACAATGAATCTTCATAGGCTG
GCTGGCGCGTCCCGGAGCAATGCTGCAAAGCCTGGACCTTGCCAAAAACA
CCATTGGGGAGGCAGGAGCGCAAGCGCTCGCGCTGGCCCTAGTGGGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig12:1697889..1698485-

>mRNA_H-akashiwo_Contig12.45.1 ID=mRNA_H-akashiwo_Contig12.45.1|Name=mRNA_H-akashiwo_Contig12.45.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=153bp|location=Sequence derived from alignment at H-akashiwo_Contig12:1697889..1698485- (Heterosigma akashiwo CCMP452)
GTGGAGCTTGCCCAGTGCGGGGTGGGGGCTGAAGGCTGCCGCCGACTGGC
AGGCTGGCTGGCGCGTCCCGGAGCAATGCTGCAAAGCCTGGACCTTGCCA
AAAACACCATTGGGGAGGCAGGAGCGCAAGCGCTCGCGCTGGCCCTAGTG
GGC
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