mRNA_H-akashiwo_Contig12.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig12.3.1
Unique NamemRNA_H-akashiwo_Contig12.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig12.3.1 vs. uniprot
Match: A0A7S3UUJ9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUJ9_HETAK)

HSP 1 Score: 223 bits (568), Expect = 5.580e-70
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1
Query:    1 IEYVAARRRDELVYHGWTRNKTAAEIYKGINSLHSNFTRFDYPVYIVHGGEDSICLPVSAQTWFERVASEQKEIKIYEGLYHEIINEVEPQRTQVITDIVAYFVGLLK 324
            IEYVAARRRDELVYHGWTRNKTAAEIYKGINSLHSNFTRFDYPVYIVHGGEDSICLPVSAQTWFERVASEQKEIKIYEGLYHEIINEVEPQRTQVITDIVAYFVGLLK
Sbjct:  212 IEYVAARRRDELVYHGWTRNKTAAEIYKGINSLHSNFTRFDYPVYIVHGGEDSICLPVSAQTWFERVASEQKEIKIYEGLYHEIINEVEPQRTQVITDIVAYFVGLLK 319          
BLAST of mRNA_H-akashiwo_Contig12.3.1 vs. uniprot
Match: A0A7S2V3G1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3G1_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.020e-16
Identity = 38/93 (40.86%), Postives = 58/93 (62.37%), Query Frame = 1
Query:   28 DELVYHGWTRNKTAAEIYKGINSLHSNFTRFDYPVYIVHGGEDSICLPVSAQTWFERVASEQKEIKIYEGLYHEIINEVEPQRTQVITDIVAY 306
            D+  Y G  RN+TA EI +GI ++      F +PVYI+HG +D +C P  A    +++ S+ K +K+Y+G+YHEI NE+E  R  V  D+V +
Sbjct:   42 DDFHYKGMVRNRTAKEIQQGIKAMMKALADFAHPVYILHGADDHVCNPQGASFIHDKIRSKVKLLKLYDGMYHEIFNEME--REMVFKDVVQF 132          
BLAST of mRNA_H-akashiwo_Contig12.3.1 vs. uniprot
Match: UPI001D0FE45D (alpha/beta hydrolase n=1 Tax=Sphingopyxis sp. FBM22 TaxID=2886687 RepID=UPI001D0FE45D)

HSP 1 Score: 82.0 bits (201), Expect = 1.300e-15
Identity = 39/102 (38.24%), Postives = 65/102 (63.73%), Query Frame = 1
Query:    4 EYVAARRRDELVYHGWTRNKTAAEIYKGINSLHSNFTRFDYPVYIVHGGEDSICLPVSAQTWFERVASEQKEIKIYEGLYHEIINEVEPQRTQVITDIVAYF 309
            + VA  R D LVY G    + AAE+ + +++ H + ++   P++I HGG D +  P  +Q +F  +AS  K+++IY+GLYHEI NE  P+R +V+ D++ +F
Sbjct:  185 DLVARYRADPLVYRGRMSARLAAEMLREMDAAHRDASKIHLPLFIQHGGADHLTAPQGSQRFFTALASVDKQLQIYDGLYHEIYNE--PERAEVVADLIHWF 284          
BLAST of mRNA_H-akashiwo_Contig12.3.1 vs. uniprot
Match: A0A1G1JUQ1_9BACT (Hydrolase_4 domain-containing protein n=1 Tax=Omnitrophica bacterium RIFCSPLOWO2_01_FULL_45_10 TaxID=1801826 RepID=A0A1G1JUQ1_9BACT)

HSP 1 Score: 81.3 bits (199), Expect = 2.000e-15
Identity = 39/99 (39.39%), Postives = 58/99 (58.59%), Query Frame = 1
Query:   10 VAARRRDELVYHGWTRNKTAAEIYKGINSLHSNFTRFDYPVYIVHGGEDSICLPVSAQTWFERVASEQKEIKIYEGLYHEIINEVEPQRTQVITDIVAY 306
            V   ++D LVYHGW    TA EI + IN +         P+ I+HG  D I  P  +Q  + R  S+ K +K+YEGL+HE++NE  P++ +VI D+V +
Sbjct:  177 VETYKKDPLVYHGWIPAGTAFEIKRAINIIKEKMGEISLPILILHGSSDRISEPDGSQELYRRAKSDDKTLKLYEGLFHEVLNE--PEKDKVIEDMVTW 273          
BLAST of mRNA_H-akashiwo_Contig12.3.1 vs. uniprot
Match: A0A0M9E445_9DELT (Lysophospholipase n=1 Tax=Candidatus Magnetomorum sp. HK-1 TaxID=1509431 RepID=A0A0M9E445_9DELT)

HSP 1 Score: 80.5 bits (197), Expect = 3.720e-15
Identity = 38/90 (42.22%), Postives = 58/90 (64.44%), Query Frame = 1
Query:   28 DELVYHGWTRNKTAAEIYKGINSLHSNFTRFDYPVYIVHGGEDSICLPVSAQTWFERVASEQKEIKIYEGLYHEIINEVEPQRTQVITDI 297
            D LVY+G    +  +EI KG+  +    ++   P+ IVHGG D +  P  +Q  F++V+S++K IKIY+GLYHE++NE  P+  QV+ DI
Sbjct:  179 DPLVYNGKISARLLSEIIKGMQRISQEVSKISLPICIVHGGSDVLAEPSGSQMLFDKVSSQKKSIKIYDGLYHEVLNE--PEHEQVLEDI 266          
BLAST of mRNA_H-akashiwo_Contig12.3.1 vs. uniprot
Match: A0A7V7DTB0_9DELT (Alpha/beta hydrolase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V7DTB0_9DELT)

HSP 1 Score: 78.2 bits (191), Expect = 1.440e-14
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 1
Query:    4 EYVAARRRDELVYHGWTRNKTAAEIYKGINSLHSNFTRFDYPVYIVHGGEDSICLPVSAQTWFERVASEQKEIKIYEGLYHEIINEVEPQRTQVITDI 297
            E V A   D LVY G T  + AAE+ K +  + S   R   P+ I+HGG+D +  P  A+  +++V+S  K IKIY+ LYHEIINE  P+R  V+ D+
Sbjct:  128 EVVQAYIDDPLVYSGKTTARLAAELLKAMQRISSEAGRITLPILILHGGDDKLADPAGARMLYDKVSSRDKTIKIYDHLYHEIINE--PERHTVLADM 223          
BLAST of mRNA_H-akashiwo_Contig12.3.1 vs. uniprot
Match: A0A1V1P3T0_9DELT (Lysophospholipase n=1 Tax=Candidatus Magnetoglobus multicellularis str. Araruama TaxID=890399 RepID=A0A1V1P3T0_9DELT)

HSP 1 Score: 77.4 bits (189), Expect = 5.300e-14
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 1
Query:   28 DELVYHGWTRNKTAAEIYKGINSLHSNFTRFDYPVYIVHGGEDSICLPVSAQTWFERVASEQKEIKIYEGLYHEIINEVEPQRTQVITDI 297
            D LV++G    +  +EI  G+  + S  +  + P+ IVHGG D +  P  +Q  +ERV+S+QK IKIY+GLYHE++NE  P+  QV+T+I
Sbjct:  179 DPLVFNGRISARLLSEIISGMQRVDSQASTINLPLCIVHGGNDKLADPKGSQLLYERVSSKQKFIKIYDGLYHEVLNE--PEYQQVLTNI 266          
BLAST of mRNA_H-akashiwo_Contig12.3.1 vs. uniprot
Match: A0A7J9W2C0_9PSEU (Alpha/beta fold hydrolase n=1 Tax=Pseudonocardiaceae bacterium TaxID=1873463 RepID=A0A7J9W2C0_9PSEU)

HSP 1 Score: 77.4 bits (189), Expect = 5.300e-14
Identity = 39/101 (38.61%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    4 EYVAARRRDELVYHGWTRNKTAAEIYKGINSLHSNFTRFDYPVYIVHGGEDSICLPVSAQTWFERVASEQKEIKIYEGLYHEIINEVEPQRTQVITDIVAY 306
            E VAA R D LV+HG    +T AEI     +L     R   PV I+HG ED +  P  ++   +R+A+E + +++Y+GL+HEI NE  P++ QV+ D++ +
Sbjct:  173 EVVAAYRTDPLVHHGKVPARTGAEILATTQALPERLDRLRIPVLILHGVEDRLVSPAGSRMVHQRIATEDRTLRLYDGLHHEIFNE--PEQDQVLDDLIGW 271          
BLAST of mRNA_H-akashiwo_Contig12.3.1 vs. uniprot
Match: A0A523SK20_9CHLR (Alpha/beta hydrolase n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A523SK20_9CHLR)

HSP 1 Score: 76.3 bits (186), Expect = 1.450e-13
Identity = 39/93 (41.94%), Postives = 53/93 (56.99%), Query Frame = 1
Query:   28 DELVYHGWTRNKTAAEIYKGINSLHSNFTRFDYPVYIVHGGEDSICLPVSAQTWFERVASEQKEIKIYEGLYHEIINEVEPQRTQVITDIVAY 306
            D LVY G  R +  AEI K +  L       + P+ I+HG  D +C P  +Q  +ERV S  K +K+YEG YHEI+NE  P   QV+ D+ A+
Sbjct:  184 DPLVYRGKIRARFGAEILKTLQELPRQMPEINLPILIMHGTADLLCDPQGSQMLYERVGSRDKTLKLYEGFYHEILNE--PGHKQVLADMEAW 274          
BLAST of mRNA_H-akashiwo_Contig12.3.1 vs. uniprot
Match: UPI00068F747E (alpha/beta hydrolase n=1 Tax=Sphingopyxis sp. MWB1 TaxID=1537715 RepID=UPI00068F747E)

HSP 1 Score: 76.3 bits (186), Expect = 1.570e-13
Identity = 38/102 (37.25%), Postives = 58/102 (56.86%), Query Frame = 1
Query:    4 EYVAARRRDELVYHGWTRNKTAAEIYKGINSLHSNFTRFDYPVYIVHGGEDSICLPVSAQTWFERVASEQKEIKIYEGLYHEIINEVEPQRTQVITDIVAYF 309
            + VAA   D LVY G    +   E+ + +N           P++I HG ED +  P  +Q  F+R+ SEQK++K+Y GL+HEI NE  P+R  V+ ++V +F
Sbjct:  177 DVVAAYHADPLVYRGRIGARLGQELLEAMNRAQQLAQHIKLPIFIQHGAEDRLADPAGSQNLFDRLGSEQKQLKLYPGLFHEIYNE--PEREAVLNELVRWF 276          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig12.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3UUJ9_HETAK5.580e-70100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V3G1_9STRA1.020e-1640.86Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI001D0FE45D1.300e-1538.24alpha/beta hydrolase n=1 Tax=Sphingopyxis sp. FBM2... [more]
A0A1G1JUQ1_9BACT2.000e-1539.39Hydrolase_4 domain-containing protein n=1 Tax=Omni... [more]
A0A0M9E445_9DELT3.720e-1542.22Lysophospholipase n=1 Tax=Candidatus Magnetomorum ... [more]
A0A7V7DTB0_9DELT1.440e-1442.86Alpha/beta hydrolase n=1 Tax=Deltaproteobacteria b... [more]
A0A1V1P3T0_9DELT5.300e-1443.33Lysophospholipase n=1 Tax=Candidatus Magnetoglobus... [more]
A0A7J9W2C0_9PSEU5.300e-1438.61Alpha/beta fold hydrolase n=1 Tax=Pseudonocardiace... [more]
A0A523SK20_9CHLR1.450e-1341.94Alpha/beta hydrolase n=1 Tax=Dehalococcoidia bacte... [more]
UPI00068F747E1.570e-1337.25alpha/beta hydrolase n=1 Tax=Sphingopyxis sp. MWB1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig12contigH-akashiwo_Contig12:160796..161297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1537715.JQFJ01000002_gene1740
PFAMsHydrolase_4
Model size502
Max annot lvl204457|Sphingomonadales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.95e-15
EggNOG OGsCOG2267@1|root,COG2267@2|Bacteria,1MWF5@1224|Proteobacteria,2VFDU@28211|Alphaproteobacteria,2K48Y@204457|Sphingomonadales
Ec32 ortholog descriptionPutative lysophospholipase, monoglyceride lipase
Ec32 orthologEc-23_002030.1
DescriptionSerine aminopeptidase, S33
Cds size327
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387115.8271031-CDS-H-akashiwo_Contig12:160795..1611221681387115.8271031-CDS-H-akashiwo_Contig12:160795..161122Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 160796..161122 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387115.8405657-UTR-H-akashiwo_Contig12:161122..1612971681387115.8405657-UTR-H-akashiwo_Contig12:161122..161297Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig12 161123..161297 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig12.3.1prot_H-akashiwo_Contig12.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig12 160796..161122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig12.3.1

>prot_H-akashiwo_Contig12.3.1 ID=prot_H-akashiwo_Contig12.3.1|Name=mRNA_H-akashiwo_Contig12.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=109bp
IEYVAARRRDELVYHGWTRNKTAAEIYKGINSLHSNFTRFDYPVYIVHGG
EDSICLPVSAQTWFERVASEQKEIKIYEGLYHEIINEVEPQRTQVITDIV
AYFVGLLK*
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mRNA from alignment at H-akashiwo_Contig12:160796..161297+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig12.3.1 ID=mRNA_H-akashiwo_Contig12.3.1|Name=mRNA_H-akashiwo_Contig12.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=502bp|location=Sequence derived from alignment at H-akashiwo_Contig12:160796..161297+ (Heterosigma akashiwo CCMP452)
ATCGAATATGTTGCGGCCCGTCGCCGTGACGAGCTCGTGTACCATGGCTG GACTCGAAACAAGACCGCAGCTGAGATTTACAAGGGAATCAACAGCCTCC ACAGTAACTTTACTCGGTTCGATTACCCGGTCTACATCGTTCATGGAGGT GAAGACAGCATCTGCCTGCCTGTTAGTGCTCAGACCTGGTTTGAGAGAGT AGCCAGTGAGCAGAAGGAAATCAAAATTTATGAGGGGCTGTACCATGAAA TCATCAATGAAGTAGAACCACAGCGGACACAAGTTATTACAGATATTGTC GCGTATTTCGTTGGCTTGCTGAAATAGTGATTGTCATAGGCTGCTTGCAA AAGTGTTACTGTGCTATTTTTTGGAGACAAATGCATTGCACAGAGTGCCA GGGCTCTATATTTTCACCATCATTTCATCTCATCATACGGATTCATGGCT CTGTGATTGTTGAGAATTTCTTTGTCTCGTTGTTCACCAATCAATCACAA TT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig12:160796..161297+

>mRNA_H-akashiwo_Contig12.3.1 ID=mRNA_H-akashiwo_Contig12.3.1|Name=mRNA_H-akashiwo_Contig12.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=327bp|location=Sequence derived from alignment at H-akashiwo_Contig12:160796..161297+ (Heterosigma akashiwo CCMP452)
ATCGAATATGTTGCGGCCCGTCGCCGTGACGAGCTCGTGTACCATGGCTG
GACTCGAAACAAGACCGCAGCTGAGATTTACAAGGGAATCAACAGCCTCC
ACAGTAACTTTACTCGGTTCGATTACCCGGTCTACATCGTTCATGGAGGT
GAAGACAGCATCTGCCTGCCTGTTAGTGCTCAGACCTGGTTTGAGAGAGT
AGCCAGTGAGCAGAAGGAAATCAAAATTTATGAGGGGCTGTACCATGAAA
TCATCAATGAAGTAGAACCACAGCGGACACAAGTTATTACAGATATTGTC
GCGTATTTCGTTGGCTTGCTGAAATAG
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