mRNA_H-akashiwo_Contig12.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig12.2.1
Unique NamemRNA_H-akashiwo_Contig12.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig12.2.1 vs. uniprot
Match: A0A7S3Y9D9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9D9_HETAK)

HSP 1 Score: 111 bits (278), Expect = 4.200e-30
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 ILMVGGMDFKSSFVGSALASSLATIITSVGGRVPYGCAPSLALTSFLCFGVLKPG 165
            ILMVGGMDFKSSFVGSALASSLATIITSVGGRVPYGCAPSLALTSFLCFGVLKPG
Sbjct:   63 ILMVGGMDFKSSFVGSALASSLATIITSVGGRVPYGCAPSLALTSFLCFGVLKPG 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig12.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3Y9D9_HETAK4.200e-30100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig12contigH-akashiwo_Contig12:127282..130623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1041930.Mtc_1671
PFAMsXan_ur_permease
Model size166
Max annot lvl224756|Methanomicrobia
KEGG koko:K06901
KEGG TC2.A.1.40
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue0.000396
EggNOG OGsCOG2252@1|root,arCOG02807@2157|Archaea,2XT7G@28890|Euryarchaeota,2N959@224756|Methanomicrobia
DescriptionPermease family
Cds size159
COG categoryF
BRITEko00000,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387114.6382926-UTR-H-akashiwo_Contig12:127281..1272871681387114.6382926-UTR-H-akashiwo_Contig12:127281..127287Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig12 127282..127287 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387114.651102-CDS-H-akashiwo_Contig12:127287..1273691681387114.651102-CDS-H-akashiwo_Contig12:127287..127369Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 127288..127369 +
1681387114.6589322-CDS-H-akashiwo_Contig12:130546..1306231681387114.6589322-CDS-H-akashiwo_Contig12:130546..130623Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 130547..130623 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig12.2.1prot_H-akashiwo_Contig12.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig12 127288..130623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig12.2.1

>prot_H-akashiwo_Contig12.2.1 ID=prot_H-akashiwo_Contig12.2.1|Name=mRNA_H-akashiwo_Contig12.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=53bp
MVGGMDFKSSFVGSALASSLATIITSVGGRVPYGCAPSLALTSFLCFGVL
KPG
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mRNA from alignment at H-akashiwo_Contig12:127282..130623+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig12.2.1 ID=mRNA_H-akashiwo_Contig12.2.1|Name=mRNA_H-akashiwo_Contig12.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3342bp|location=Sequence derived from alignment at H-akashiwo_Contig12:127282..130623+ (Heterosigma akashiwo CCMP452)
ATTCTAATGGTTGGTGGAATGGATTTCAAGTCTTCGTTTGTTGGGTCAGC
GCTTGCATCTTCATTAGCAACCATCATCACATCTGTTGGTATGTTTCATA
AGCTGTATGATGGCATGCCCCCCCTACTACTATCTTTGTGTCATGCAATG
TACTCCTCTCACATCCTGAGCCACAGCCCCTGTCTTCTTGCACGCGTGCC
ATGGTATCTTAACGATTTATCAAATGGTGGAAGTTGCCCAACTTGAAAAA
TTGCCGCAAAGCCCAACAACATGTTCTATTGCCCTGTTGCTTACATCCAG
TCTTTCAGTTGTCTTGTCCATTGGCGCTTCCTCGACGACTCACGACCTTG
ATGACATTCAGAGATCACTCTTGATAGGAACGATGTCTGTGCTTCGCCGT
CTCTTCGGAATTCGAGTGTTCCGTGCAGTTTCCTTGTCTACTTGTTGTGC
GAGCGATATGAAATCTCGCTTTTCGATATGGGTATGATGGATACTCCCAC
TCTTTTTTAGAATTTAGAAGAACAATTTTTGGGAATACTAATATGAACAT
AGAGGTCCCGGTCTGCGGACCGCAGGCCCACCTCTGCCCCTCTATATGGG
GCAGGGGTACAGTGTTTAGCTGACTATAGCAGTTTCCTTTGGCGCTGCAA
ACACGCAGTTGCTGGGGTAATTCTCAGTGGAGGGTGTCCTCGTTGCTGTC
CCTGCGCACTGGAGCACATGAGACATAGCGCCTGTTGCTTTGGGGGAGCG
AACCCCACATGGCCTGGGCTTGCTCGACTTCGAGAGTGGGAGTGGGGAGG
GCAGGATGGGGGATCAGCTGGAACAGAGGACTGGTCTTGGTAGGCGCAGT
TTGCGCGAGGGTGATTCAAATGGTATACAAGCGGTCCTGTGAGGGAAGCA
CTACGCAGCTGGAAGAAGGGCAAGGAGGGTACATAATCAGGATTTTCGGG
CTTGGGGCTGTCACGACAGCGACTCCAGGACCAGTCCTTACAGGAAAGGC
GCGAGGTCAAAGCGCCTAGGGAAACAAGCCCGTGAACGGGCCGACGGCAG
AAAGCCAAGAAGAGAGACCAGTCTTCCATCGGGAGGCCTGATCGCGCTCA
AGCAGGTGGCCCAAGGGATCAAGTCGAGCAAAGATGAGTCGCCAGGGAGC
GAGCACCAGCTATCATTGCTGCTGCTGCTGGCGACAACAACGGGCTGCTC
CTTCATCGCGTAGTTGGTCATCTGCTGGAGACGGAGACGGGGGGAAAGAT
CAAGAAGAATTCTGTGCGCGCTTAAACAGGAATCAACGAATTGTAATTAC
AAATTCGGAATTCGGCGGAGCAAACTTGGAGGGGGGGGGAAATCCGAAGG
AGCGGGGAGCAAGTGAAAGGAGCGGTCCGCCAATCAGACCGGCGGGGGAA
ACGGGGAGCAGAGGGGAGGGAGGGGAAGAAAAACGAACAGCTGCTACGGA
CGTTGCGCTGTCGATCATCAACTCGTTGATCGAGAACGCGTACAAATGTG
CTGTGGTGGTGCTGCAGCAAGGGCAAGGGCAGACCGATCAGCCTGAAGGG
AACAGCAAGAGTGGCATCGAGGGTATGGGGGAGTCACCTGAGGGGTCGAG
TGGGGATACAGACTCTGAATCGAGCGATGAGGAGACTGCATCGAGCTcCG
AGGATGACTCAACAAGGGCAGTCGGCGCAGCGTCGGGGGGAAGGGAAAAC
TATATGTTGCAAGAGCCAGTGGAGGATGGGTTTACGCGGGTTAGCACGAG
GGAAGAAAAGAGGCAGGCAAAGCGAGCGTTACAGAAGGAGGAGGAAAAGA
AAAGAGTGGAGCTGGCAGCGAAGGCGAGAGAGAGGAGGAAAAAGCGAGAC
CACGAGATCCAAAGTAAGCTATGGGCAGAGACCAACCTGCGCAATCACCA
AACTAGGGCCAGGGTTGCAAGAGAGCGCCAGGAAGCTCAGGCCAAGGCGG
CGGAAGGAAGAGCGCAAAGACCTATGGCCCAGAGAGGTGGTGGGGCTGCT
GCCTTGCGAGGGAGGGGAGGCAGGGCGGCTAGGGGTGGGAGAGGGAggGG
TGGGGGCTCCGGAAGGGGCAATGGGGGACCTGCCGGAGGTGGGCGGAGCA
CAGGAGGGCCTGCTGGAACTGGGGGGAGGGCAGCAAGCGTTGAGCAGCAC
CCCCCAAAGCAGGCCAAGCGACGGGATTGCTGGCCATGGTGTGGCTCAAT
GGGGCAGCAACGGGTCGAATGGATCAAGGAGCAGCACAGGACTAACAAGC
ACTGGGAATGGGGACCTGATGCAGAGCCTGTCAATTGTTCATCTTGCGGG
TGGAAAGTGGGGCAGGGAATGGGATGAGAAGAGAATCTGCTACAGTGAAG
GTGTGCAGCTGGGAACAGTGTGTTATATTTTCTTTCTTTTCTTTTTCTTT
TCTGAAGTTTTGATGATGAACCAGGGAGTAAGTAGTGGGAGCTAGAAGTG
GCAGGGTCCACGTGTGGAGGCCGGGGCTTCGGTCCTTGTAGTTATCCAAG
AGGTGGACTTAAAATATAGTTATCCAAGAGGTAGGACCTTAAATAAATTA
AAATCATCATCATCGTCATCATCATCATCATGGGTATGATGGATCTGCGA
AGGTTATTTCCGTTTTGTATCTTTGTTTACCAGTCTACGTTGGCTGGAGT
TTATCTGATTGGCCACAATTTGGATTACTTTGTTGTTTACAACCAATGGT
AATATATTCCTGGAATGAAGCCAATGAGCTTTTGGAGATGGCAATTGGAG
CTTTATCAATTGTGATAATTGGAGTAGAATATGTTTATAAAAACATCATC
AGAATGGTTTGCCTGTTTAGCACCACCAACAACAACAGTAGCAGCAGCAC
AGCTGCATCAGCAGTGGTTGTAGTATAGTTATTATTATCATAGGACAGAG
GATGGAGGTTCTTCGACCTCTGGCACCATCATTAACAACCGTATAATAAG
AATTAATAAGAATAAATTTAAATAAACTTGGTGATTTCGATCCCCCGGCT
TTGCCGGCATAGTGTTTTCCAGGCGCTGCGGCTCGCCCTCCTGGGCTTGC
TAGCTACCCCAGCTTGCTAAACTAGATTGGATGATGATTGCATTTTTCGC
ACAGTATTATGCCCATAGCATGATGGTACTCCTTTGTGCATACACCTTCT
GGGCGCGTAGCGTAATCTGTTTCATTCCTTGTTTGCTAGACTTGCTTATT
TTTCACCTTGAAGAACGGACTTATAATGAAGTTGATGCCTTGTTCGTTGC
TGTACTTTTTAACAGGAGGAAGGGTGCCATATGGCTGTGCCCCAAGCCTA
GCCCTGACATCTTTCCTGTGTTTTGGGGTGCTGAAGCCAGGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig12:127282..130623+

>mRNA_H-akashiwo_Contig12.2.1 ID=mRNA_H-akashiwo_Contig12.2.1|Name=mRNA_H-akashiwo_Contig12.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=159bp|location=Sequence derived from alignment at H-akashiwo_Contig12:127282..130623+ (Heterosigma akashiwo CCMP452)
ATGGTTGGTGGAATGGATTTCAAGTCTTCGTTTGTTGGGTCAGCGCTTGC
ATCTTCATTAGCAACCATCATCACATCTGTTGGAGGAAGGGTGCCATATG
GCTGTGCCCCAAGCCTAGCCCTGACATCTTTCCTGTGTTTTGGGGTGCTG
AAGCCAGGC
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