mRNA_H-akashiwo_Contig12.109.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig12.109.1
Unique NamemRNA_H-akashiwo_Contig12.109.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig12.109.1 vs. uniprot
Match: A0A6S9KQH8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KQH8_HETAK)

HSP 1 Score: 139 bits (351), Expect = 3.880e-37
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 1 
Query:    1 TNSSRSNGPTLTFENIEYEVFQKKSKERKTLIHPCSGKIKAQEMVCIMGQSGAGKSTLLDILAARIKSSDQV 216
            TNSSRSNGPTLTFENIEYEVFQKKSKERKTLIHPCSGKIKAQEMVCIMGQSGAGKSTLLDILAARIKSSDQ+
Sbjct:   37 TNSSRSNGPTLTFENIEYEVFQKKSKERKTLIHPCSGKIKAQEMVCIMGQSGAGKSTLLDILAARIKSSDQL 108
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BLAST of mRNA_H-akashiwo_Contig12.109.1 vs. uniprot
Match: A0A4Y7TIS9_9AGAR (ATP-dependent permease n=1 Tax=Coprinellus micaceus TaxID=71717 RepID=A0A4Y7TIS9_9AGAR)

HSP 1 Score: 50.4 bits (119), Expect = 1.910e-5
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   28 TLTFENIEYEVFQKKSKERKTLIHPCSGKIKAQEMVCIMGQSGAGKSTLLDILAARIK 201
            +L F NI Y +        +TL+   SG++KA +++ IMG SGAGKSTLLDILA + K
Sbjct:  378 SLYFSNITYSLGP-----NRTLLSSISGRVKAGQVMAIMGASGAGKSTLLDILARKRK 430
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BLAST of mRNA_H-akashiwo_Contig12.109.1 vs. uniprot
Match: A0A182K2C9_9DIPT (Uncharacterized protein n=3 Tax=Pyretophorus TaxID=44537 RepID=A0A182K2C9_9DIPT)

HSP 1 Score: 50.4 bits (119), Expect = 1.930e-5
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:   22 GPTLTFENIEYEVFQKKSKERKTLIHPCSGKIKAQEMVCIMGQSGAGKSTLLDILA 189
            G  L F+NI Y+V Q+K  E K L+   SG  K   +  I+G SGAGKSTLL++L+
Sbjct: 1213 GTNLHFQNITYQVRQRK--EEKVLLKNISGTFKTGRLTAILGPSGAGKSTLLNVLS 1266
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BLAST of mRNA_H-akashiwo_Contig12.109.1 vs. uniprot
Match: A0A4Q2DMF8_9AGAR (ABC transporter domain-containing protein n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4Q2DMF8_9AGAR)

HSP 1 Score: 50.4 bits (119), Expect = 1.930e-5
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   28 TLTFENIEYEVFQKKSKERKTLIHPCSGKIKAQEMVCIMGQSGAGKSTLLDILAARIK 201
            +L F NI Y +        +TL+   SG++KA +++ IMG SGAGKSTLLDILA + K
Sbjct: 1139 SLYFSNISYSLGP-----NRTLLXNISGRVKAGQVMAIMGASGAGKSTLLDILARKRK 1191
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BLAST of mRNA_H-akashiwo_Contig12.109.1 vs. uniprot
Match: A0A7S2KI65_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2KI65_9DINO)

HSP 1 Score: 47.8 bits (112), Expect = 6.040e-5
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:   85 KTLIHPCSGKIKAQEMVCIMGQSGAGKSTLLDILAAR 195
            K ++   SG++K QE+ CI+G SGAGKSTLL+ILA R
Sbjct:   40 KEVLQGVSGRLKPQELACILGPSGAGKSTLLNILAGR 76
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig12.109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6S9KQH8_HETAK3.880e-3798.61Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4Y7TIS9_9AGAR1.910e-548.28ATP-dependent permease n=1 Tax=Coprinellus micaceu... [more]
A0A182K2C9_9DIPT1.930e-548.21Uncharacterized protein n=3 Tax=Pyretophorus TaxID... [more]
A0A4Q2DMF8_9AGAR1.930e-548.28ABC transporter domain-containing protein n=1 Tax=... [more]
A0A7S2KI65_9DINO6.040e-559.46Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig12contigH-akashiwo_Contig12:5222506..5222972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FP97
Preferred nameABCG4
PFAMsABC2_membrane,ABC_tran
Model size218
Max annot lvl2759|Eukaryota
KEGG koko:K05681,ko:K21396
KEGG TC3.A.1.204
KEGG Pathwayko01523,ko02010,ko04976,map01523,map02010,map04976
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005775,GO:0005886,GO:0006810,GO:0007034,GO:0007275,GO:0008150,GO:0009555,GO:0009653,GO:0009987,GO:0010208,GO:0010927,GO:0015399,GO:0015405,GO:0015893,GO:0016020,GO:0016021,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022804,GO:0022857,GO:0030198,GO:0031224,GO:0031974,GO:0032501,GO:0032502,GO:0032989,GO:0042221,GO:0042493,GO:0042623,GO:0042626,GO:0042891,GO:0043062,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043492,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045229,GO:0048229,GO:0048646,GO:0048856,GO:0048869,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0070013,GO:0071840,GO:0071944,GO:0085029
Exons3
Evalue1.11e-08
EggNOG OGsCOG1131@1|root,KOG0061@2759|Eukaryota
DescriptionATPase activity, coupled to transmembrane movement of substances
Cds size216
COG categoryV
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387117.9221573-CDS-H-akashiwo_Contig12:5222505..52225621681387117.9221573-CDS-H-akashiwo_Contig12:5222505..5222562Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 5222506..5222562 +
1681387117.931613-CDS-H-akashiwo_Contig12:5222696..52227681681387117.931613-CDS-H-akashiwo_Contig12:5222696..5222768Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 5222697..5222768 +
1681387117.9396574-CDS-H-akashiwo_Contig12:5222884..52229711681387117.9396574-CDS-H-akashiwo_Contig12:5222884..5222971Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 5222885..5222971 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig12.109.1prot_H-akashiwo_Contig12.109.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig12 5222506..5222971 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig12.109.1

>prot_H-akashiwo_Contig12.109.1 ID=prot_H-akashiwo_Contig12.109.1|Name=mRNA_H-akashiwo_Contig12.109.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=72bp
TNSSRSNGPTLTFENIEYEVFQKKSKERKTLIHPCSGKIKAQEMVCIMGQ
SGAGKSTLLDILAARIKSSDQV
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mRNA from alignment at H-akashiwo_Contig12:5222506..5222972+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig12.109.1 ID=mRNA_H-akashiwo_Contig12.109.1|Name=mRNA_H-akashiwo_Contig12.109.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=467bp|location=Sequence derived from alignment at H-akashiwo_Contig12:5222506..5222972+ (Heterosigma akashiwo CCMP452)
ACGAATTCATCCCGCAGTAATGGCCCCACTTTGACTTTTGAGAACATCGA
ATATGAGGTATCAGGTCGTTTATTGTTGCTGCAATCTTTGGGCGATCTGG
GGGGGTGAGAGTATTTTCCTCATTCTTACTGCCTTCAGTGCTGGCTTTGA
GCTAAGAAACAGCACACACACAAAAAAAAATGATAATATAGGTGTTCCAA
AAGAAGTCAAAAGAACGCAAGACCTTGATTCACCCTTGCTCAGGGAAAAT
CAAGGCCCAGGAGGTAGGCAGCCCAGAGCTCAAATGTATGCATCACAGAA
ATGGTAATATGAGATTCATCTTATAAAATGGATCATACCATACCTGTTAG
CAAGTGAGCTTTTGTCCCCCTTGATCTAGATGGTTTGCATCATGGGCCAA
TCTGGCGCTGGCAAGTCCACACTACTAGACATATTGGCTGCAAGAATAAA
GTCTTCTGATCAGGTAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig12:5222506..5222972+

>mRNA_H-akashiwo_Contig12.109.1 ID=mRNA_H-akashiwo_Contig12.109.1|Name=mRNA_H-akashiwo_Contig12.109.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=216bp|location=Sequence derived from alignment at H-akashiwo_Contig12:5222506..5222972+ (Heterosigma akashiwo CCMP452)
ACGAATTCATCCCGCAGTAATGGCCCCACTTTGACTTTTGAGAACATCGA
ATATGAGGTGTTCCAAAAGAAGTCAAAAGAACGCAAGACCTTGATTCACC
CTTGCTCAGGGAAAATCAAGGCCCAGGAGATGGTTTGCATCATGGGCCAA
TCTGGCGCTGGCAAGTCCACACTACTAGACATATTGGCTGCAAGAATAAA
GTCTTCTGATCAGGTA
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