mRNA_H-akashiwo_Contig12.108.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig12.108.1
Unique NamemRNA_H-akashiwo_Contig12.108.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig12.108.1 vs. uniprot
Match: A0A6V1TNM6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TNM6_HETAK)

HSP 1 Score: 416 bits (1070), Expect = 2.040e-140
Identity = 223/237 (94.09%), Postives = 223/237 (94.09%), Query Frame = 3 
Query:  390 MCDGSRSEAKKEKEICRYFVHGRCKKGKWCEFSHHRPLCRYGSHCWFGPWCWNSHGITPRVNSIRTARKPGKQSARNKRRREKRKVLMAEAKASLVKIKELETQLGLKEKKTDELQESERQLAGLQAQLEEETRIAKAHQERAITTDLELTQVTEMMVTAKEKCAEEVSSMKSESEKREKMLHEMKEHYVNLEQYTEKLADALKLEQEKNVILGMDXXXXXXXNREQVLKQYRIAAK 1100
            MCDGSRSEAKKEKEICRYFVHGRCKKGKWCEFSHHRPLCRYGSHCWFGPWCWNSHGITPRVNSIRTARKPGKQSARNKRRREKRKVLMAEAKASLVKIKELETQLGLKEKKTDELQESERQLAGLQAQLEEETRIAKAHQERAITTDLELTQVTEMMVTAKEKCAEEVSSMKSESEKREKMLHEMKEHYVNLEQYTEKLADALKLEQEKN              REQVLKQYRIAAK
Sbjct:    1 MCDGSRSEAKKEKEICRYFVHGRCKKGKWCEFSHHRPLCRYGSHCWFGPWCWNSHGITPRVNSIRTARKPGKQSARNKRRREKRKVLMAEAKASLVKIKELETQLGLKEKKTDELQESERQLAGLQAQLEEETRIAKAHQERAITTDLELTQVTEMMVTAKEKCAEEVSSMKSESEKREKMLHEMKEHYVNLEQYTEKLADALKLEQEKN--------------REQVLKQYRIAAK 223
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BLAST of mRNA_H-akashiwo_Contig12.108.1 vs. uniprot
Match: A0A6V1TNV4_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TNV4_HETAK)

HSP 1 Score: 140 bits (354), Expect = 6.450e-34
Identity = 78/142 (54.93%), Postives = 98/142 (69.01%), Query Frame = 3 
Query:  315 LQGGSKEKGEAALE*RSNLVALLSRMCDG--SRSEAKKEKEICRYFVHGRCKKGKWCEFSHHRPLCRYGSHCWFGPWCWNSHGITPRVNSIRTARKPGKQSARNKRRREKRKVLMAEAKASLVKIKELETQLGLKEKKTDEL 734
            LQGGSKE+G   LE R +LVALL  MC+G  S  E K  + +CRY++ G C+ GK CEFSH RPLCRYG           SH ITPRV+ +    KPG+ + RN++RREKR+VL+AEAK SLV++KELE QL L+EK+  EL
Sbjct:    1 LQGGSKERGRQQLEWRFSLVALLFGMCEGHGSEEEEKDGRSVCRYYLRGWCRNGKRCEFSHRRPLCRYGDRXXXXXXXXXSHKITPRVSRV-GGTKPGRHNVRNRQRREKRRVLIAEAKVSLVRVKELEDQLKLEEKQKSEL 141
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig12.108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6V1TNM6_HETAK2.040e-14094.09Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6V1TNV4_HETAK6.450e-3454.93Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig12contigH-akashiwo_Contig12:5153780..5155392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1613
Hectar predicted targeting categoryother localisation
Exons1
Cds size1119
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387115.727397-UTR-H-akashiwo_Contig12:5153779..51541681681387115.727397-UTR-H-akashiwo_Contig12:5153779..5154168Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig12 5153780..5154168 +
1681387115.7446375-UTR-H-akashiwo_Contig12:5155287..51553921681387115.7446375-UTR-H-akashiwo_Contig12:5155287..5155392Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig12 5155288..5155392 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387115.7361538-CDS-H-akashiwo_Contig12:5154168..51552871681387115.7361538-CDS-H-akashiwo_Contig12:5154168..5155287Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 5154169..5155287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig12.108.1prot_H-akashiwo_Contig12.108.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig12 5154169..5155287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig12.108.1

>prot_H-akashiwo_Contig12.108.1 ID=prot_H-akashiwo_Contig12.108.1|Name=mRNA_H-akashiwo_Contig12.108.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=373bp
MCDGSRSEAKKEKEICRYFVHGRCKKGKWCEFSHHRPLCRYGSHCWFGPW
CWNSHGITPRVNSIRTARKPGKQSARNKRRREKRKVLMAEAKASLVKIKE
LETQLGLKEKKTDELQESERQLAGLQAQLEEETRIAKAHQERAITTDLEL
TQVTEMMVTAKEKCAEEVSSMKSESEKREKMLHEMKEHYVNLEQYTEKLA
DALKLEQEKNVILGMDLKLEQEKNREQVLKQYRIAAKRSGSWPNRLNCST
PRAGCQVARRRERRQWSWEGRSGPSWARAGAPDRRRVGPPSSALPSGAAA
DTLAQPRPAAVTLLTRSRASSAPVLHSRSSPCLPCRVDVGWHVGGREIGA
FGRCIGAFGRRIGAFGRRFANP*
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mRNA from alignment at H-akashiwo_Contig12:5153780..5155392+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig12.108.1 ID=mRNA_H-akashiwo_Contig12.108.1|Name=mRNA_H-akashiwo_Contig12.108.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1613bp|location=Sequence derived from alignment at H-akashiwo_Contig12:5153780..5155392+ (Heterosigma akashiwo CCMP452)
TCGGTGCTTTCGGGCGCTGTATCGGGGCCTTCGGGCGCCGTATCGGGGCT
TTCGGGCGCCGCTTTGCGAACCCCTAGTGGAGTCTCACCAGATATTTTTT
GGTGGTTTTTGGATGTGCTCACGTCACCCGCGTGGCATGATCGAAGACCT
CGACATTGTGGGGGTAATATGTAGAAGAAGAGGCAGAAGTAGAAGAGGGG
GTCATCATCATCACCTTTTTTGGCGTTTTGCCTCTAACAACCAATAATAG
AACTTGCCCAATTGCATGCCTTCTATAGATCCTAGTGGGCTTGCTTTAGT
TCACTGAAGCAGGTTTACAAGGTGGTAGCAAAGAAAAGGGGGAGGCAGCG
TTAGAGTGAAGATCTAATTTGGTTGCCCTTCTTTCCAGAATGTGCGACGG
AAGCCGTTCTGAAGCGAAGAAGGAAAAAGAGATCTGCCGCTATTTCGTCC
ATGGGCGGTGCAAGAAGGGCAAATGGTGCGAGTTTTCTCACCATAGGCCT
CTCTGCCGCTACGGAAGTCATTGCTGGTTTGGCCCCTGGTGCTGGAACTC
ACATGGAATCACTCCTAGAGTAAACAGTATCAGGACTGCCAGGAAGCCCG
GGAAGCAAAGTGCACGCAACAAGCGCCGTCGTGAGAAGCGAAAGGTGCTG
ATGGCCGAAGCGAAGGCTTCCCTGGTAAAGATCAAAGAGCTGGAGACTCA
ACTGGGGCTTAAGGAAAAGAAGACGGACGAGCTCCAGGAAAGTGAACGCC
AACTGGCTGGGCTACAAGCTCAACTGGAAGAGGAAACGCGGATTGCCAAG
GCCCACCAAGAGAGGGCAATAACCACGGACCTCGAGCTGACACAGGTAAC
GGAGATGATGGTTACAGCAAAGGAGAAATGTGCAGAGGAGGTAAGCAGCA
TGAAGAGCGAGAGTGAGAAGAGGGAAAAAATGTTGCACGAGATGAAGGAG
CACTATGTGAACCTGGAGCAGTACACTGAAAAGCTGGCGGATGCCCTGAA
GCTGGAGCAGGAGAAGAATGTGATACTGGGGATGGACCTGAAGCTGGAGC
AGGAGAAGAATAGGGAGCAGGTGCTGAAGCAGTATAGGATAGCAGCAAAG
CGGAGCGGCTCCTGGCCCAACAGGCTGAACTGCAGCACGCCCAGAGCCGG
CTGCCAGGTGGCCAGGAGGCGAGAGCGCAGGCAGTGGAGCTGGGAGGGCA
GGAGCGGGCCCAGCTGGGCTCGAGCTGGAGCACCGGACAGACGGCGCGTT
GGCCCACCTTCTTCGGCCCTGcCGAGCGGGGCTGCAGCGGACACGCTAGC
TCAGCCCCGCCCGGCTGCGGTCACCCTCCTGACCCGGAGCAGAGCTAGTT
CAGCGCCAGTTCTGCACTCGCGTTCTTCGCCGTGCCTGCCCTGCCGTGTG
GATGTGGGCTGGCACGTGGGGGGCCGTGAAATCGGTGCTTTCGGGCGCTG
TATCGGGGCCTTCGGGCGCCGTATCGGGGCTTTCGGGCGCCGCTTTGCGA
ACCCCTAGTGGAGTCTCACCAGATATTTTTTGGTGGTTTTTGGATGTGCT
CACGTCACCCGCGTGGCATGATCGAAGACCTCGACATTGTGGGGGTAATA
TGTAGAAGAAGAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig12:5153780..5155392+

>mRNA_H-akashiwo_Contig12.108.1 ID=mRNA_H-akashiwo_Contig12.108.1|Name=mRNA_H-akashiwo_Contig12.108.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1119bp|location=Sequence derived from alignment at H-akashiwo_Contig12:5153780..5155392+ (Heterosigma akashiwo CCMP452)
ATGTGCGACGGAAGCCGTTCTGAAGCGAAGAAGGAAAAAGAGATCTGCCG
CTATTTCGTCCATGGGCGGTGCAAGAAGGGCAAATGGTGCGAGTTTTCTC
ACCATAGGCCTCTCTGCCGCTACGGAAGTCATTGCTGGTTTGGCCCCTGG
TGCTGGAACTCACATGGAATCACTCCTAGAGTAAACAGTATCAGGACTGC
CAGGAAGCCCGGGAAGCAAAGTGCACGCAACAAGCGCCGTCGTGAGAAGC
GAAAGGTGCTGATGGCCGAAGCGAAGGCTTCCCTGGTAAAGATCAAAGAG
CTGGAGACTCAACTGGGGCTTAAGGAAAAGAAGACGGACGAGCTCCAGGA
AAGTGAACGCCAACTGGCTGGGCTACAAGCTCAACTGGAAGAGGAAACGC
GGATTGCCAAGGCCCACCAAGAGAGGGCAATAACCACGGACCTCGAGCTG
ACACAGGTAACGGAGATGATGGTTACAGCAAAGGAGAAATGTGCAGAGGA
GGTAAGCAGCATGAAGAGCGAGAGTGAGAAGAGGGAAAAAATGTTGCACG
AGATGAAGGAGCACTATGTGAACCTGGAGCAGTACACTGAAAAGCTGGCG
GATGCCCTGAAGCTGGAGCAGGAGAAGAATGTGATACTGGGGATGGACCT
GAAGCTGGAGCAGGAGAAGAATAGGGAGCAGGTGCTGAAGCAGTATAGGA
TAGCAGCAAAGCGGAGCGGCTCCTGGCCCAACAGGCTGAACTGCAGCACG
CCCAGAGCCGGCTGCCAGGTGGCCAGGAGGCGAGAGCGCAGGCAGTGGAG
CTGGGAGGGCAGGAGCGGGCCCAGCTGGGCTCGAGCTGGAGCACCGGACA
GACGGCGCGTTGGCCCACCTTCTTCGGCCCTGcCGAGCGGGGCTGCAGCG
GACACGCTAGCTCAGCCCCGCCCGGCTGCGGTCACCCTCCTGACCCGGAG
CAGAGCTAGTTCAGCGCCAGTTCTGCACTCGCGTTCTTCGCCGTGCCTGC
CCTGCCGTGTGGATGTGGGCTGGCACGTGGGGGGCCGTGAAATCGGTGCT
TTCGGGCGCTGTATCGGGGCCTTCGGGCGCCGTATCGGGGCTTTCGGGCG
CCGCTTTGCGAACCCCTAG
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