mRNA_H-akashiwo_Contig1196.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1196.2.1
Unique NamemRNA_H-akashiwo_Contig1196.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1196.2.1 vs. uniprot
Match: A0A7S2USD3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USD3_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.450e-14
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    1 RLERRAG-TKLAENLAAKALQECPGSGLLWAEEIGAAPRPQRKARSVEALKR 153
            RLERR G +KLAENL AKALQ+CP SG++WAEEI  APR Q++ARSVEALKR
Sbjct:  169 RLERRHGNSKLAENLTAKALQDCPSSGIIWAEEISCAPRHQQRARSVEALKR 220
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BLAST of mRNA_H-akashiwo_Contig1196.2.1 vs. uniprot
Match: F0YJY9_AURAN (PRP1_N domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJY9_AURAN)

HSP 1 Score: 73.2 bits (178), Expect = 7.940e-14
Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 RLERRAGT-KLAENLAAKALQECPGSGLLWAEEIGAAPRPQRKARSVEALKR 153
            RLERR G  KLAENL+AKALQECP SG LWA+EI AAPRP RK +S+EALKR
Sbjct:  800 RLERRHGNRKLAENLSAKALQECPESGELWADEIFAAPRPARKGKSLEALKR 851
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BLAST of mRNA_H-akashiwo_Contig1196.2.1 vs. uniprot
Match: A0A8J2SWX2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SWX2_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.000e-11
Identity = 37/52 (71.15%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 RLERRAG-TKLAENLAAKALQECPGSGLLWAEEIGAAPRPQRKARSVEALKR 153
            RLERR G  KLAENL AKALQEC  SG LWA+ I  APRP RK +S+EALKR
Sbjct:  851 RLERRHGHQKLAENLQAKALQECESSGELWADCISTAPRPARKGKSLEALKR 902
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BLAST of mRNA_H-akashiwo_Contig1196.2.1 vs. uniprot
Match: UPI0003C1A17A (pre-mRNA-processing factor 6-like n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=UPI0003C1A17A)

HSP 1 Score: 62.4 bits (150), Expect = 4.850e-11
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 RLERRAGTK-LAENLAAKALQECPGSGLLWAEEIGAAPRPQRKARSVEALKR 153
            RLE RAG K +A  L AKALQECP SG+LWAE I    RPQRK +SV+ALK+
Sbjct:   27 RLEYRAGLKNIASTLMAKALQECPNSGILWAEAIFLEARPQRKTKSVDALKK 78
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BLAST of mRNA_H-akashiwo_Contig1196.2.1 vs. uniprot
Match: A0A2D4EXG0_MICCO (Uncharacterized protein (Fragment) n=1 Tax=Micrurus corallinus TaxID=54390 RepID=A0A2D4EXG0_MICCO)

HSP 1 Score: 61.2 bits (147), Expect = 7.160e-11
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 RLERRAGTK-LAENLAAKALQECPGSGLLWAEEIGAAPRPQRKARSVEALKR 153
            RLE RAG K +A  L AKALQECP SG+LW+E I    RPQRK +SV+ALK+
Sbjct:   32 RLEYRAGLKNIANTLMAKALQECPNSGILWSEAIFLEARPQRKTKSVDALKK 83
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BLAST of mRNA_H-akashiwo_Contig1196.2.1 vs. uniprot
Match: A0A7S2EY21_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EY21_TRICV)

HSP 1 Score: 64.7 bits (156), Expect = 7.630e-11
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    1 RLERRAGT-KLAENLAAKALQECPGSGLLWAEEIGAAPRPQRKARSVEALKR 153
            RLERRAG  KLA  L A+ALQECP SGLL AE I  APRP++K+RS +A+KR
Sbjct:  407 RLERRAGNDKLASALMARALQECPSSGLLLAENIATAPRPEQKSRSADAIKR 458
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BLAST of mRNA_H-akashiwo_Contig1196.2.1 vs. uniprot
Match: C1MWP2_MICPC (mRNA splicing protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MWP2_MICPC)

HSP 1 Score: 62.8 bits (151), Expect = 3.650e-10
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   25 KLAENLAAKALQECPGSGLLWAEEIGAAPRPQRKARSVEALKR 153
            + A+ L AKALQECP SG+LWAE +  APRPQRK++SV+ALKR
Sbjct:  792 RAADALMAKALQECPASGMLWAEAVRMAPRPQRKSKSVDALKR 834
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BLAST of mRNA_H-akashiwo_Contig1196.2.1 vs. uniprot
Match: A0A8C9XKA3_SANLU (Pre-mRNA-processing factor 6 n=1 Tax=Sander lucioperca TaxID=283035 RepID=A0A8C9XKA3_SANLU)

HSP 1 Score: 61.6 bits (148), Expect = 9.330e-10
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 RLERRAGTK-LAENLAAKALQECPGSGLLWAEEIGAAPRPQRKARSVEALKR 153
            RLE RAG K +A  L AKALQECP SG+LWAE +    RPQRK +SV+ALK+
Sbjct:  775 RLEFRAGLKNIANTLMAKALQECPNSGILWAEAVFLEARPQRKTKSVDALKK 826
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BLAST of mRNA_H-akashiwo_Contig1196.2.1 vs. uniprot
Match: UPI00189AA6A4 (LOW QUALITY PROTEIN: pre-mRNA-processing factor 6-like n=1 Tax=Cebus imitator TaxID=2715852 RepID=UPI00189AA6A4)

HSP 1 Score: 61.2 bits (147), Expect = 1.260e-9
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 RLERRAGTK-LAENLAAKALQECPGSGLLWAEEIGAAPRPQRKARSVEALKR 153
            RLE RAG K +A  L AKALQECP SG+LW+E I    RPQRK +S++ALK+
Sbjct:  284 RLENRAGLKNIANTLMAKALQECPNSGILWSEAIFVEARPQRKTKSMDALKK 335
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BLAST of mRNA_H-akashiwo_Contig1196.2.1 vs. uniprot
Match: C1EFS7_MICCC (mRNA splicing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EFS7_MICCC)

HSP 1 Score: 61.2 bits (147), Expect = 1.280e-9
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   25 KLAENLAAKALQECPGSGLLWAEEIGAAPRPQRKARSVEALKR 153
            K A+ L +K LQECP SG LWAE +  APRPQRKA+SV+ALKR
Sbjct:  782 KAADALLSKGLQECPASGALWAEAVKMAPRPQRKAKSVDALKR 824
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1196.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2USD3_9STRA1.450e-1475.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0YJY9_AURAN7.940e-1476.92PRP1_N domain-containing protein n=1 Tax=Aureococc... [more]
A0A8J2SWX2_9STRA3.000e-1171.15Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
UPI0003C1A17A4.850e-1165.38pre-mRNA-processing factor 6-like n=1 Tax=Latimeri... [more]
A0A2D4EXG0_MICCO7.160e-1163.46Uncharacterized protein (Fragment) n=1 Tax=Micruru... [more]
A0A7S2EY21_TRICV7.630e-1167.31Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
C1MWP2_MICPC3.650e-1067.44mRNA splicing protein n=1 Tax=Micromonas pusilla (... [more]
A0A8C9XKA3_SANLU9.330e-1063.46Pre-mRNA-processing factor 6 n=1 Tax=Sander luciop... [more]
UPI00189AA6A41.260e-961.54LOW QUALITY PROTEIN: pre-mRNA-processing factor 6-... [more]
C1EFS7_MICCC1.280e-967.44mRNA splicing protein n=1 Tax=Micromonas commoda (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1196contigH-akashiwo_Contig1196:34706..34861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog44056.XP_009040696.1
PFAMsPRP1_N,TPR_14,TPR_16,TPR_19,TPR_8,ubiquitin
Model size156
Max annot lvl2759|Eukaryota
KEGG koko:K12855
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0003824,GO:0004553,GO:0004565,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008380,GO:0009266,GO:0009409,GO:0009628,GO:0009791,GO:0009845,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015030,GO:0015925,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016607,GO:0016787,GO:0016798,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030312,GO:0030532,GO:0031047,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034622,GO:0034641,GO:0035257,GO:0035258,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044728,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046540,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0050681,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051252,GO:0051254,GO:0051427,GO:0060147,GO:0060148,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0065003,GO:0065007,GO:0070013,GO:0070920,GO:0071005,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0080188,GO:0090304,GO:0090351,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0140110,GO:1901360,GO:1901363,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1903798,GO:1903800,GO:1990904,GO:2000112,GO:2000628,GO:2000630,GO:2000634,GO:2000636,GO:2000637,GO:2001141
Exons1
Evalue1.3e-14
EggNOG OGsKOG0495@1|root,KOG0495@2759|Eukaryota
Descriptionspliceosomal tri-snRNP complex assembly
Cds size156
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387113.7878664-CDS-H-akashiwo_Contig1196:34705..348611681387113.7878664-CDS-H-akashiwo_Contig1196:34705..34861Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1196 34706..34861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1196.2.1prot_H-akashiwo_Contig1196.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1196 34706..34861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1196.2.1

>prot_H-akashiwo_Contig1196.2.1 ID=prot_H-akashiwo_Contig1196.2.1|Name=mRNA_H-akashiwo_Contig1196.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=52bp
RLERRAGTKLAENLAAKALQECPGSGLLWAEEIGAAPRPQRKARSVEALK
R*
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mRNA from alignment at H-akashiwo_Contig1196:34706..34861+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1196.2.1 ID=mRNA_H-akashiwo_Contig1196.2.1|Name=mRNA_H-akashiwo_Contig1196.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=156bp|location=Sequence derived from alignment at H-akashiwo_Contig1196:34706..34861+ (Heterosigma akashiwo CCMP452)
AGGCTGGAGCGGCGGGCGGGAACGAAGCTGGCGGAGAACCTGGCGGCCAA
GGCGCTGCAGGAGTGCCCGGGCAGCGGCCTGCTCTGGGCGGAGGAGATCG
GGGCGGCCCCGCGCCCGCAGCGCAAGGCGCGGAGCGTGGAGGCCCTCAAG
CGGTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1196:34706..34861+

>mRNA_H-akashiwo_Contig1196.2.1 ID=mRNA_H-akashiwo_Contig1196.2.1|Name=mRNA_H-akashiwo_Contig1196.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=156bp|location=Sequence derived from alignment at H-akashiwo_Contig1196:34706..34861+ (Heterosigma akashiwo CCMP452)
AGGCTGGAGCGGCGGGCGGGAACGAAGCTGGCGGAGAACCTGGCGGCCAA
GGCGCTGCAGGAGTGCCCGGGCAGCGGCCTGCTCTGGGCGGAGGAGATCG
GGGCGGCCCCGCGCCCGCAGCGCAAGGCGCGGAGCGTGGAGGCCCTCAAG
CGGTGA
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