mRNA_H-akashiwo_Contig1190.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1190.1.1
Unique NamemRNA_H-akashiwo_Contig1190.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1190.1.1 vs. uniprot
Match: UPI0007383DFE (pseudouridylate synthase 7 homolog isoform X1 n=2 Tax=Diachasma alloeum TaxID=454923 RepID=UPI0007383DFE)

HSP 1 Score: 48.5 bits (114), Expect = 3.930e-5
Identity = 19/38 (50.00%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:    4 LGGDYRRLLQWPRDFAWEAVEYRDPMAPLIHSDLDKLK 117
            LGG YR++LQ P+D +W  V Y D  A LI +D+DK++
Sbjct:  620 LGGQYRKILQVPKDMSWRIVHYNDLQADLILADIDKMR 657
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1190.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI0007383DFE3.930e-550.00pseudouridylate synthase 7 homolog isoform X1 n=2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1190contigH-akashiwo_Contig1190:11526..13467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7955.ENSDARP00000040498
Preferred namePUS7
PFAMsTruD
Model size158
Max annot lvl33208|Metazoa
KEGG koko:K06176
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001522,GO:0002682,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006417,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009890,GO:0009892,GO:0009982,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0017148,GO:0019222,GO:0019899,GO:0031119,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0034248,GO:0034249,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0045595,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:1901360,GO:1901532,GO:1902036,GO:1903706,GO:1990481,GO:2000026,GO:2000112,GO:2000113,GO:2000380,GO:2000736
Exons2
Evalue3.82e-07
EggNOG OGsCOG0585@1|root,KOG2339@2759|Eukaryota,38EVE@33154|Opisthokonta,3BDT8@33208|Metazoa,3CWMS@33213|Bilateria,482PX@7711|Chordata,495I3@7742|Vertebrata,49ZVR@7898|Actinopterygii
EC5.4.99.27
DescriptionPseudouridylate synthase 7 homolog
Cds size156
COG categoryS
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387111.8954713-CDS-H-akashiwo_Contig1190:11525..116061681387111.8954713-CDS-H-akashiwo_Contig1190:11525..11606Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1190 11526..11606 +
1681387111.9077845-CDS-H-akashiwo_Contig1190:13392..134671681387111.9077845-CDS-H-akashiwo_Contig1190:13392..13467Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1190 13393..13467 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1190.1.1prot_H-akashiwo_Contig1190.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1190 11526..13467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1190.1.1

>prot_H-akashiwo_Contig1190.1.1 ID=prot_H-akashiwo_Contig1190.1.1|Name=mRNA_H-akashiwo_Contig1190.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=52bp
RLGGDYRRLLQWPRDFAWEAVEYRDPMAPLIHSDLDKLKEPFQDIAAKAE
EE
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mRNA from alignment at H-akashiwo_Contig1190:11526..13467+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1190.1.1 ID=mRNA_H-akashiwo_Contig1190.1.1|Name=mRNA_H-akashiwo_Contig1190.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1942bp|location=Sequence derived from alignment at H-akashiwo_Contig1190:11526..13467+ (Heterosigma akashiwo CCMP452)
CGGCTGGGCGGGGACTACCGGCGGCTGCTGCAGTGGCCGCGCGACTTCGC
CTGGGAGGCCGTCGAGTACCGGGACCCCATGGTGCGGGGGGGACCCGCGC
CTGCGGCACCTCCCTCTTTCTTTACTTTCCCGTTCCTTTCCTTTTCCCTT
TCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTGCTTTCTGTCTTCCTTC
CTTTCTTTCTTTCTTGCTTTCTGATTTCTTTTTTCTTTCTTTCTTGTACA
TATATCGTAGAGAGAGAGTTAAATTTAAACAAAACAACCTACGCCTTGCA
TCTATGCAGATGTCCCTGTGGTAGTATACCAAAACCTACACATGAAATCC
CAAAACCCAAATCAATACAGAATATCAAATACAGCACACCCCACTATCTC
TGGAAGAGAGTGGCAATCCCCTCGCCATCCTCGAACCCCGAGCTCCTCCA
CCTCTTCCTGGAGCCCCTGGTCCGCAGATGTAGAGGGCGGTGTAAATACA
TGCATCTATGGATCTCAAGGGCAGCTGGAACTTCCCAGTTGGCCAGAAGC
CAGACTTGGTCCGAAGAAGTGCTCAGATGTCAAGGCAGCCTGCAAATAGA
CGGTGGTTGTGTGGACCAGGATGTGAAGGGGCGCATTGCAAGTATTAGAA
CGTAGAAGTGCATTTAACTGTTCTTCTCCCGCAAACAGGATGTTAGTAGT
AGTGCATTGTGCTCTAGATAGAGGGTGATAGAAATGCTTCTATGTGTCAT
TTACAGTTGTCTCATAGAGGATGGTAAAAACAGTGTGGTGTGTAGGAATG
GTCAGTGGACCAGAAGCCTAAACATACTACTATACGTAGTTTTTGATGAA
TAATGCCAAAAAGCCCATTTGAATATGCACTTTCTGACCATTCAATTACA
AAAATAGACTATATTTTTATATCCTGATGTGCAAGGATGGATGGCCGTGG
GGGGGTCCGGGGTGGGGTGGGGTATATAGTTTGGGGCCGGTGAGAGCTGT
GAGTGGATGGTCCTCGTAGTACGCGGTGCTTGGGTGCATGAGTGGGTGGT
CCAGAGCAGATATATAGTACAGTGGGGGGCTCATGGGCAATCATCTGGAA
CATGAGCATGAGCTAGAGTGGGGTTATCCTGCGGACGTGTGCAGTGTTGC
GTTATGGACTGGCGGCTAGTTCCAGAAAATGCAGCCGAGAAGGAGTTCAG
GCTCACTTGGAATCAGGAGAGATGTTAGTTATATGATGGTGTGGTTGCCG
GTGCTGGGGTGGTGGTAGTACCAGGTGGTCCGGAACAGAATAACTAGAGT
GGGGGGCTGAGCAGGCAATGCGGAGCAACCGCATTAGGGGGCCGGGATCG
GGGGGAGGTTGGGTTCTAGAACAAAAAATGACCGGCGATCTCATGGCCGA
AGTGTTGGAGGAATTTTCAATAATAATAAAAGGGGGGGAGGGGAAGTGTG
CTGCTCATCCCCTCGCTGAATGATACGGATTAAGGCCTTTCGAATGCATT
CATCCAACAGAGATATATATGTGCATGCAGGTATGTCCCCCATGGCATAT
GTGGATTGTGGTGGTGGGGCAGATTGTGCTGGCCATCACTCGCCTGACTG
CTTGATAGTAGCTAAGGATGCATTCAAGTAATGAATGTGTAATTGTCATC
TTCGTATGTGTGTGTGTGTGTTGGGGGGCATTGTTGTTGTTTACTCTACC
TCCAGACCGCATGGTACAGGTTACAGGTTCTCTGAAGCACATTCAACATA
GATAATGAAGATATGTGGCGTGATCAGATGTATCAAATCCTTTTATACAT
TGGTGGGGTATTCCCCAATACAATTGTCTGTATGTGTGTGTGTGTGGGGG
GGGGGGTTAATTATCAGGCACCTTTGATTCACTCAGACCTTGACAAACTG
AAAGAGCCCTTTCAAGATATTGCTGCCAAGGCTGAAGAAGAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1190:11526..13467+

>mRNA_H-akashiwo_Contig1190.1.1 ID=mRNA_H-akashiwo_Contig1190.1.1|Name=mRNA_H-akashiwo_Contig1190.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=156bp|location=Sequence derived from alignment at H-akashiwo_Contig1190:11526..13467+ (Heterosigma akashiwo CCMP452)
CGGCTGGGCGGGGACTACCGGCGGCTGCTGCAGTGGCCGCGCGACTTCGC
CTGGGAGGCCGTCGAGTACCGGGACCCCATGGCACCTTTGATTCACTCAG
ACCTTGACAAACTGAAAGAGCCCTTTCAAGATATTGCTGCCAAGGCTGAA
GAAGAG
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