mRNA_H-akashiwo_Contig119.20.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig119.20.1
Unique NamemRNA_H-akashiwo_Contig119.20.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig119.20.1 vs. uniprot
Match: A0A7S3XNQ9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNQ9_HETAK)

HSP 1 Score: 100 bits (250), Expect = 1.310e-24
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 GMAHQVQSMVMPNAASSAVVKPIEEPPAHLDTKEQATSSSATQSEHENYERISA 162
            GMAHQVQSMVMPNAASSAVVKPIEEPPAHLDTKEQATSSSATQSEHENYERISA
Sbjct:   52 GMAHQVQSMVMPNAASSAVVKPIEEPPAHLDTKEQATSSSATQSEHENYERISA 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig119.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XNQ9_HETAK1.310e-24100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig119contigH-akashiwo_Contig119:1385454..1385828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size164
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size159
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387111.105717-UTR-H-akashiwo_Contig119:1385453..13854561681387111.105717-UTR-H-akashiwo_Contig119:1385453..1385456Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig119 1385454..1385456 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387111.1155705-CDS-H-akashiwo_Contig119:1385456..13855921681387111.1155705-CDS-H-akashiwo_Contig119:1385456..1385592Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig119 1385457..1385592 +
1681387111.124344-CDS-H-akashiwo_Contig119:1385805..13858281681387111.124344-CDS-H-akashiwo_Contig119:1385805..1385828Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig119 1385806..1385828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig119.20.1prot_H-akashiwo_Contig119.20.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig119 1385457..1385828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig119.20.1

>prot_H-akashiwo_Contig119.20.1 ID=prot_H-akashiwo_Contig119.20.1|Name=mRNA_H-akashiwo_Contig119.20.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=53bp
MAHQVQSMVMPNAASSAVVKPIEEPPAHLDTKEQATSSSATQSEHENYER
ISA
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mRNA from alignment at H-akashiwo_Contig119:1385454..1385828+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig119.20.1 ID=mRNA_H-akashiwo_Contig119.20.1|Name=mRNA_H-akashiwo_Contig119.20.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=375bp|location=Sequence derived from alignment at H-akashiwo_Contig119:1385454..1385828+ (Heterosigma akashiwo CCMP452)
GGCATGGCTCACCAAGTGCAGTCTATGGTGATGCCGAATGCTGCTTCATC
TGCCGTGGTGAAGCCAATTGAGGAGCCTCCTGCCCATCTTGATACAAAGG
AACAAGCGACAAGCTCCAGTGCCACCCAGTCTGAACATGGTGGGTAACAT
AAATAGATTGCCCACTTCACGTACAATCTTTACACTAAAGAACTACTGGC
TGACGATAGATGGAATCACATTATCACTGATGATGATGGAAGCGGCTGAG
TTAGAGGTATAGGGACTTCTCCGGTCGCTGGCATGCCCACCCGCACACGC
CAACCGCCGCTTACTTCTTTTCCCCCCTCCTCTTCCGTCGTGCTCGCTGC
AGAAAACTACGAGAGGATCTCTGCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig119:1385454..1385828+

>mRNA_H-akashiwo_Contig119.20.1 ID=mRNA_H-akashiwo_Contig119.20.1|Name=mRNA_H-akashiwo_Contig119.20.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=159bp|location=Sequence derived from alignment at H-akashiwo_Contig119:1385454..1385828+ (Heterosigma akashiwo CCMP452)
ATGGCTCACCAAGTGCAGTCTATGGTGATGCCGAATGCTGCTTCATCTGC
CGTGGTGAAGCCAATTGAGGAGCCTCCTGCCCATCTTGATACAAAGGAAC
AAGCGACAAGCTCCAGTGCCACCCAGTCTGAACATGAAAACTACGAGAGG
ATCTCTGCG
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