mRNA_H-akashiwo_Contig118.29.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig118.29.1
Unique NamemRNA_H-akashiwo_Contig118.29.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig118.29.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 436 bits (1120), Expect = 1.350e-137
Identity = 269/687 (39.16%), Postives = 386/687 (56.19%), Query Frame = 1
Query:    1 TMDLWHQTLAHTSESRIRQMAQQGFIPPHSIRLTDKLSFCNSCAAAAATRVKTHRKTSCGSVKPAHPIQEIGTDVAGPFPPDRHGNKYYRVFQCQFTKYRAIFPMKTKNDNILPHFLSFVESAKRSNPDTSIDDVAAVRLDGGGEFVEFRNFCQDLGIELLTSGRDNPDGCRV-EPQNRIILKVVRTVLHSSDLPPQFWSEAARYAVYTLNRTVSSDS-SISPYEAFFGFPASVKHFRAFGSPCWVHLQKERRGGGKLADRATEQRFLSFENSTGVYRLLSLNTGKIVTSKHVTFNEEPVI--RRALTKLPNPLA------VLQSE-----------LNCSVDAKLHQKGNFYPRLSSTTSARPTKTPPSSTSPQQP-----RKSSRAP----------------PPMLRFGYKLRAMLAC-------------SFAFLGTHSEAHTNPFNLAHAKTMSDWDMWHDAAVKEYKSLVANDVFELVERPTNKNVIKSRWVLAKKFE-DGVLKKYKGRLVAKGYSQQPGIDYAATFAPVVSAPSLRIILSLAAEQGLSLSQLDVQTAFLNGTLTEELNMEQPEGFRDPEFPDHVWKLKKSLYGLKQSPRCWYANLHSTLREYGFTRSEYDGCIYMRKVGDA-VTYVTIYVDNIVIAFNDDRTVAALKATLKKKYRITDAGRLENFLGLKI 1890
            T+DLWH    H SE RIR MA+ G IP  SI+ TDKLSFC  CA A ATR + H K     V    P+Q +  DVAG FP D    K+  +   ++T++R  F MK KN+ +LPH  SF+   +R   + S+  V  +RLD G EF E   FC   GI L  +G+DNP    + E  NRI+L + R VL +S L   +WSEAA+Y+V+T+NRT +S S S +PY++ F   AS+ H R FGS C+ H   E R G KL +RA + +FLS+      Y +L+L T ++  +K V F+E  V+   RA    P P        + +SE           +     A      +F  R+  +++      P +S S  Q      RKSSR+                 P     G  ++AM+                   LGTHSE   NP+NLAHA+   DW  W +A   EY SL+ ++V+ELV++P+  N++  RW+LAKK++ DG L KYK RL A+GYSQ  G+DY  TF+PVVS+ SLR +L++AA + + +  +D++TAFL+G L E++ M+QPEG+  P     V KLKKSLYGLKQ+P+CWY NL+  L + G+TR+ YD C+Y +       T +++YVD+IV+A +D   ++ +K  +   Y ++D G +E+ LG+K+
Sbjct:   43 TIDLWHHRCVHISERRIRMMAKAGIIPASSIKATDKLSFCEDCAMAKATR-QPHSKKPRFDVA-TRPLQCLHCDVAGKFPSDSKSRKWMLIVCDEYTRFRRCFFMKHKNE-VLPHMQSFISMIQRVTQNNSLL-VENIRLDNGTEFSELAAFCDRSGILLEQTGKDNPASNGIAERSNRIVLDMTRVVLRASGLSNYYWSEAAKYSVHTINRTTTSSSRSTTPYQSLFKKKASIDHLRVFGSICYAHRPSETRPG-KLQERAVKCKFLSYNALERTYTVLNLTTHRLWVTKDVVFDERSVVDVERAPAVGPRPTTTAEFFPLFESEQASGGSSPAPTIEPGTRAAARPSRSFRGRVLESSAVHDVAGPTTSRSKPQNGDAVRRKSSRSASKQASKALSRLRRSRRPHRSVTGAIMKAMMVGINFVGGLNGVSGHQVCLLGTHSEQ--NPWNLAHAQRSPDWMRWREAVADEYDSLLRHNVWELVDKPSGANIVGCRWILAKKYDADGNLSKYKARLCAQGYSQIEGVDYTNTFSPVVSSASLRTVLTIAASEDMEIHCMDIKTAFLHGKLEEDIYMKQPEGYEVPGMEHKVLKLKKSLYGLKQAPKCWYQNLNGFLLQQGYTRNGYDSCVYSKVSSTGGKTLISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKV 722          
BLAST of mRNA_H-akashiwo_Contig118.29.1 vs. uniprot
Match: A0A1X7U495_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7U495_AMPQE)

HSP 1 Score: 295 bits (754), Expect = 3.890e-84
Identity = 203/633 (32.07%), Postives = 317/633 (50.08%), Query Frame = 1
Query:   10 LWHQTLAHTSESRIRQMAQQGFIPPHSIRLTDKLSFCNSCAAAAATRVKTHRKTSCGSVKPAHPIQEIGTDVAGPFP-PDRHGNKYYRVFQCQFTKYRAIFPMKTKNDNILPHFLSFVESAKRSNPDTSIDDVAAVRLDGGGEFV--EFRNFCQDLGIELLTSGRDNPDGCRV-EPQNRIILKVVRTVLHSSDLPPQFWSEAARYAVYTLNRTVSSDS-SISPYEAFFGFPASVKHFRAFGSPCWVHLQKERRGGGKLADRATEQRFLSFENSTGVYRLLSLNTGKIVTSKHVTFNEEPVIRRALTKLPNPLAVLQSELNCSVDAKLHQKGNFYPRLSSTTSARPTKTPPSSTSPQQPRKSSRAPPPMLRFGYKLRAMLACSFAFLGTHSEAHTNPFNLAHAKTMSDWDMWHDAAVKEYKSLVANDVFELVERPTNKNVIKSRWVL-AKKFEDGVLKKYKGRLVAKGYSQQPGIDYAATFAPVVSAPSLRIILSLAAEQGLSLSQLDVQTAFLNGTLTEELNMEQPEGFRDPEFPDHVWKLKKSLYGLKQSPRCWYANLHSTLREYGFTRSEYDGCIYMRKVGDAVTYVTIYVDNIVIAFNDDRTVAALKATLKKKYRITDAGRLENFLGLKI 1890
            +WHQ   H SES +  ++ Q  +          +  C SC      R    +K   G  +P + ++ + +D+ GP   P   G KY+  F    T Y  I+ +K K++     F  F+E   +   ++S+  +  +R D GGE+   EF  + +  GI+   S   NP+   V E  NR +++ VR +L SS LP +FW+EA   AVY  NR+ +    +++P+EA+ G   SVKH R FG   + H+ K+ R   KL  +A     L + N+T  YRL      ++  S+ V F+E   ++    K  +  ++ +S  +  +D   +Q  +    +                               +R  ++ R        ++ T       P ++  A T ++ + W +A  +E KS+ +N V+ELVE P  K  I  +WV   K   DG +++YK RLVAKG+SQQ G+DY  TF+PV    SLR++L+LA   GL++ Q+DV TAFLNGTL EE+ M+QPEG+ +      V +L  SLYGLKQ+PRCW + L   L+E GF ++  D CIY    GD    + IYVD+I++A      +  +K+ L   + + D G L  FLG+K+
Sbjct:  441 IWHQRFGHLSESGLHMLSNQKLVDDFDYNTAKSIPLCKSCIDGKHHRSPFPKK---GRTRPQNSLELVHSDICGPMKTPSLSGAKYFLTFVDDKTHYIWIYVLKQKSEA----FSKFLEWKAQVELESSLK-LKVLRTDNGGEYTSTEFNEYLKREGIKHELSVPKNPEQNGVAERLNRTLIEAVRAMLSSSTLPHRFWAEALSTAVYLKNRSYTKAVINMTPHEAWNGRRPSVKHLRVFGCTAYSHIPKDERS--KLDPKARRCILLGYSNTTKGYRLYDTKRDRVFYSRDVIFDE---MKLGFEKEQDE-SITESSNHFGIDLSSNQTDDAEDAVPDENDXXXXXXXXXXXXXXXXNXXXXGETDTVRRSHRERRRPDYYGTWIYTADAQRREPQSVTEAMTSNEREKWSEAMEREMKSIESNKVWELVELPEGKKPIGCKWVYKVKTGADGQVERYKARLVAKGFSQQYGLDYDQTFSPVARFESLRLLLALAVRNGLTVHQMDVTTAFLNGTLKEEVYMDQPEGYVEKGKEKLVCRLNHSLYGLKQAPRCWNSVLDQKLKEIGFVQTVSDPCIYKAVSGDDFI-IGIYVDDILLAGKSKERMIEVKSVLSNMFEVKDLGELNYFLGIKV 1058          
BLAST of mRNA_H-akashiwo_Contig118.29.1 vs. uniprot
Match: A0A438FVW7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FVW7_VITVI)

HSP 1 Score: 295 bits (755), Expect = 1.340e-83
Identity = 204/653 (31.24%), Postives = 334/653 (51.15%), Query Frame = 1
Query:   10 LWHQTLAHTSESRIRQMAQQGFIPPHSIRLTDKLSFCNSCAAAAATRVKTHRKTSCGSVKPAHPIQEIGTDVAGPFP-PDRHGNKYYRVFQCQFTKYRAIFPMKTKND--NILPHFLSFVESAKRSNPDTSIDDVAAVRLDGGGEFV--EFRNFCQDLGIEL-LTSGRDNPDGCRVEPQNRIILKVVRTVLHSSDLPPQFWSEAARYAVYTLNRTVSSDS-SISPYEAFFGFPASVKHFRAFGSPCWVHLQKERRGGGKLADRATEQRFLSFENSTGVYRLLSLNTGKIVTSKHVTFNEEPVIRRALTKLPNPLAVLQSELNCSVDAKLHQKGNFYPRLSSTTSARPTKTPPSSTSPQQPRKSSRAPP--PMLRFGY-----------KLRAML----ACSFAFLGTHSEAHTNPFNLAHAKTMSDWDMWHDAAVKEYKSLVANDVFELVERPTNKNVIKSRWVLAKKFE-DGVLKKYKGRLVAKGYSQQPGIDYAATFAPVVSAPSLRIILSLAAEQGLSLSQLDVQTAFLNGTLTEELNMEQPEGFRDPEFPDHVWKLKKSLYGLKQSPRCWYANLHSTLREYGFTRSEYDGCIYMR-KVGDAVTYVTIYVDNIVIAFNDDRTVAALKATLKKKYRITDAGRLENFLGLKI 1890
            LWH+   H + + ++ + Q+  +      + +K   C+ CA     R    +  S  + K    ++ + TD+ GP   P +  NKY+ +F   FT+   +F MK K++  +I   F SFVE             +  +R D G E+   +F NFC+D G+E  LT          VE +N+ ++++ + +L+   LP  FW+EA   AVY LNR  +    + +P EA+ G   SV+HF+ FG  C+  + KERR   KL + + +  F+ + + +  YRL +L T K++ S+ V F+E+        K+     +L +EL         + GN                   STS   P++S R+ P  P +               K+R++      C+   +   S            + + D D W  A  KE   +  N+ ++L+E+P +K +I  +W+   K+  DG +++ K RLVAKGYSQQPG+D+  TFAPV    ++R I+++AA++G  L QLD+++AFLNG L EE+ +EQP+GF      + V+KLKK+LYGLKQ+PR WY  + S   E GF RS+ +  +Y++ K    +  V +YVD+++   ND++ V   +  + KKY ++D G L  FLG+++
Sbjct:  219 LWHRRFGHLNFNSLKMLCQRKMVQGLPNTIEEKNEVCDGCALGKHHRQSFPKGVSWRAKKV---LELVHTDICGPMSTPSQGNNKYFVLFINDFTRMTWVFFMKQKSEVFSIFKKFKSFVEKQSGCY-------IKTLRSDRGMEYTSSQFGNFCEDEGVERQLTVAYTPQQNGVVERKNQTVMEMAKAMLYKKGLPKIFWAEAVNTAVYLLNRCPTKALLNKTPIEAWSGRKPSVRHFKVFGCLCYSQVPKERRS--KLDETSEKCIFMGYSSQSKGYRLYNLKTSKLIISRDVIFDEKAAWNWEEGKILKK-TILVNELQTKAPV---ETGN------------------GSTSTSSPQESPRSVPLSPSIESXXXXXXXXXXXPRKMRSLTDVYERCNLCIVEPQS----------FEEAIKDED-WRKAMEKEIDVIEKNETWQLIEKPKDKEIIGVKWIFRVKYHSDGRVQRLKARLVAKGYSQQPGVDFHETFAPVARLDTIRTIIAVAAQKGWLLYQLDIKSAFLNGKLEEEIYVEQPQGFVVDGEENKVYKLKKALYGLKQAPRAWYTQIDSYFIENGFIRSKSEPTLYVKSKDNSQILIVALYVDDLIFTGNDEKMVEKFRNEMMKKYEMSDMGLLHYFLGIEV 826          
BLAST of mRNA_H-akashiwo_Contig118.29.1 vs. uniprot
Match: A0A085MW59_9BILA (Uncharacterized protein (Fragment) n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085MW59_9BILA)

HSP 1 Score: 289 bits (739), Expect = 9.410e-83
Identity = 213/649 (32.82%), Postives = 323/649 (49.77%), Query Frame = 1
Query:    1 TMDLWHQTLAHTSESRIRQMAQQGFIPPHSIRLTDKLSFCNSCAAAAATRVKTHRKTSCGSVKPAHPIQEIGTDVAGPFPP-DRHGNKYYRVFQCQFTKYRAIFPMKTKNDNILPHFLSFVESAKRSNPDTSIDDVAAVRLDGGGEF--VEFRNFCQDLGIELLTSGRDNPD-GCRVEPQNRIILKVVRTVLHSSDLPPQFWSEAARYAVYTLNRT-VSSDSSISPYEAFFGF-PASVKHFRAFGSPCWVHLQKERRGGGKLADRATEQRFLSFENSTGVYRLLSLNTGKIVTSKHVTFNEEPVIRRALTKLPNP------------LAVLQSELNCSVDAKLHQKGNFYPRLSSTTSARPTKTPPSSTSPQQPRKSSRAPPPMLRFGYKLRAMLACSFAFLGTHSEAHTNPFNLAHAKTMSDWDMWHDAAVKEYKSLVANDVFELVERPTNKNVIKSRWVLAKKFE-DGVLKKYKGRLVAKGYSQQPGIDYAATFAPVVSAPSLRIILSLAAEQGLSLSQLDVQTAFLNGTLTEELNMEQPEGFRDPEFPDHVWKLKKSLYGLKQSPRCWYANLHSTLREYGFTRSEYDGCIYMRKVGDAVTYVTIYVDNIVIAFNDDRTVAALKATLKKKYRITDAGRLENFLGLKI 1890
            T+ LWH+ L H ++  +R++ +   I  H      +  FC  C      R   H + +    +P  P   +  DV GP       G+KY+ VF+  F +YR +F +K K D +     +FV  A      T+ + V  V  DGG EF  V  +   Q  GI + T+    P+     E +NRI+++  R++LHS  LP   W EA   A + LNRT  ++    SP E +F   P  + HFR FG+ C+VH+ K+RR   K   ++   RF+ + +    YR+    T +IVTS+ V F  E  +      + +             +  L++E+N  + ++  + G+ +   S    A   +  P ++ P++ RK               R      +A L   S    NP     A    D   W  A  +E  SL  N V+ LV+ P  K V+ +RWV   K + DG + KYK RLVAKGY Q+PGIDY+ TF+PV    ++R ILS+ A + L   Q DV+TAFL GTL EE+ + QPEGF D    D V +L +SLYGLKQSPRCW   L   +++ G  +S  D C+++R+   +   V +YVD+ ++A +D   +    A ++K++RIT  G L++FL + I
Sbjct:  324 TLQLWHERLCHQNKRHVREVLKNCGIEVHV-----QEEFCTGCVFGKQHRGSFHVRKN----RPKVPGALVHADVCGPMENVSMSGSKYFVVFKDDFPRYRRVFFLK-KKDEVAQCLETFVNEAS-----TTGNTVKCVLCDGGLEFNNVSVKKILQQRGITMRTAMPYTPEQNGAAERENRILVETGRSMLHSKGLPIFLWDEAVNTACHVLNRTGPTTVKGKSPIELWFKRGPVRIDHFRVFGTECFVHVPKQRRR--KWDKKSVAGRFMGYCDEKDGYRVWLPGTNRIVTSRDVIFKPEETLTSVQLTVKSSSEKXXXXXNSSYVEQLKAEINSELPSEQEEAGSTFESDSRPEEA---EWEPKNSRPERQRK---------------RPKYLSDYALLTETS----NPKTFHEAMKSEDAIHWRKAMEEEMCSLQENSVWTLVDLPAGKRVVDTRWVFCVKTKVDGTVAKYKARLVAKGYVQRPGIDYSETFSPVARFDTVRTILSVGAVEKLKFQQFDVKTAFLYGTLEEEVYVRQPEGFEDG--TDRVCRLNRSLYGLKQSPRCWNKRLVEFMKKKGMKQSTADPCLFIRQGRKSKLMVVVYVDDGILAGSDTCEMELFLAEMEKEFRITK-GPLDSFLVIGI 930          
BLAST of mRNA_H-akashiwo_Contig118.29.1 vs. uniprot
Match: A0A8K1FHK1_PYTOL (Uncharacterized protein n=3 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHK1_PYTOL)

HSP 1 Score: 288 bits (737), Expect = 1.130e-80
Identity = 211/684 (30.85%), Postives = 339/684 (49.56%), Query Frame = 1
Query:   10 LWHQTLAHTSESRIRQMAQQGFIPPHSIRLTDKLSFCNSCAAAAATRVKTHRKTSCGSVKPAHPIQEIGTDVAGPF-PPDRHGNKYYRVFQCQFTKYRAIFPMKTKNDNILPHFLSFVESAKRSNPDTSIDDVAAVRLDGGGEF--VEFRNFCQDLGIELLTSGRDNPDGCRV-EPQNRIILKVVRTVLHSSDLPPQFWSEAARYAVYTLNR--TVSSDSSISPYEAFFGFPASVKHFRAFGSPCWVHLQKERRGGGKLADRATEQRFLSFENSTGVYRLLSLNTGKIVTSKHVTFNEEPVIRRALTKLPNPLAVLQSELNCSVDAKLHQKG-NFYP-RLSSTTSARPTKTPPS---STSPQ--QPRKSSRA--------------------PPPMLRFGYKLRAMLACSF-------------AFLGTHSE----AHTN------PFNLAHAKTMSDWDMWHDAAVKEYKSLVANDVFELVERPTNKNVIKSRWVL-AKKFEDGVLKKYKGRLVAKGYSQQPGIDYAATFAPVVSAPSLRIILSLAAEQGLSLSQLDVQTAFLNGTLTEELNMEQPEGFRDPEFPDHVWKLKKSLYGLKQSPRCWYANLHSTLREYGFTRSEYDGCIYMRKVGDAVTYVTIYVDNIVIAFNDDRTVAALKATLKKKYRITDAGRLENFLGLKI 1890
            LWH  L H     +  + ++       +    +   C+ CA    TRV+    T+    +    ++ + +DV GP   P   G KY+  F    +++ A++ M+ K++ +   F+ FV+ A+          V  +R D GGE+   +F  FC D GI    +    P+   V E  NR +++  R +L  + +P ++W EA   + +  NR  T + D  +SP+E +     ++ + + FG   +VH+ KE+R   K   R+   RFL + +    YR   L+TG+IV S+   F E+        ++       + E +  +D     +  N  P   +STT+ +PT+  P     T  Q  QP +   A                    PP   R+G   R   A S              A L +  E    AH        P +   A   SD   W +A   E++SL  N+ +ELV  P  +  I S+WV   K+  +G++++YK RLVAKG+ Q+ G+D+  TFAPV    S+RIILSLAA+  L L Q+DV+TAFLNG L EE+ M+QP+G+ DP++P+H  KLK++LYGLKQSPR W   +   +R+ GFT+   D C+Y+++   A  +V IYVD++++A N+   +AA K  L +++ ++D G L+  LG+++
Sbjct:  429 LWHLRLGHIGHGGLEAIVKKNLAVGIDLGSVKQWELCSGCALGKQTRVRFQSATTD---RAKALLEVVHSDVCGPMRTPTFGGMKYFVTFIDDKSRHCAVYLMRNKSE-VFDKFVQFVKMAENQTDRR----VKMLRSDNGGEYKSAKFTKFCADRGIIQKFTPPYTPELNGVAERMNRTLVECARCMLEHAGMPNEYWGEAVTTSAFLRNRLPTRAQDLHMSPHEVWTKKKPTLANLKVFGCHAYVHVPKEKRS--KFDARSVLCRFLGYSDHEKAYRFEELSTGRIVVSRDAQFMEDTFDDGKREQVGGKTVEFRDE-DGELDGNSGDEDMNEQPAEPTSTTAEQPTRERPQWQQQTQGQRFQPLQQPNAEYPPGAKRILRTYSLEALSEPPVEKRYGRTSRTSGASSVPAPSQSSPLDDTSALLMSIEEEEEYAHVVYSVGDLPTSFKSAMESSDASQWMEACDSEFESLRKNETWELVPLPQGRKAISSKWVFKVKETAEGLIERYKARLVAKGFLQKYGVDFEETFAPVAKFTSIRIILSLAAQYKLVLHQMDVKTAFLNGLLDEEIYMKQPDGYIDPKYPNHACKLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCNMDHCVYVKRNDSATMFVVIYVDDLILACNNKDLLAATKRALSERFEMSDLGELKYCLGMEV 1101          
BLAST of mRNA_H-akashiwo_Contig118.29.1 vs. uniprot
Match: A0A1Y3EJI6_9BILA (Integrase core domain protein n=1 Tax=Trichinella nativa TaxID=6335 RepID=A0A1Y3EJI6_9BILA)

HSP 1 Score: 280 bits (716), Expect = 1.220e-80
Identity = 216/662 (32.63%), Postives = 333/662 (50.30%), Query Frame = 1
Query:    1 TMDLWHQTLAHTSESRIRQMAQQGFIPPHSIRLTDKLSFCNSCAAAAATRVKTHRKT-SCGSVKPAHPIQEIGTDVAGPFP-PDRHGNKYYRVFQCQFTKYRAIFPMKTKNDNILPHFLSFVESAKRSNPDTSIDDVAAVRLDGGGEF--VEFRNFCQDLGIELLTSGRDNPDGCRV-EPQNRIILKVVRTVLHSSDLPPQFWSEAARYAVYTLNRT-VSSDSSISPYEAFFGF-PASVKHFRAFGSPCWVHLQKERRGGGKLADRATEQRFLSFENSTGVYRLLSLNTGKIVTSKHVTFNEEPVIRRALTKLP-------------NPLAV-LQSELN---------CSVDAKLHQKGNFYPRLSSTTSARPTKTPPSSTSPQQPRKSSRAPPPMLRFGYKLRAMLACSFAFLGTHSEAHTNPFNLAHAKTMS-DWDMWHDAAVKEYKSLVANDVFELVERPTNKNVIKSRWVLAKKFE-DGVLKKYKGRLVAKGYSQQPGIDYAATFAPVVSAPSLRIILSLAAEQGLSLSQLDVQTAFLNGTLTEELNMEQPEGFRDPEFPDHVWKLKKSLYGLKQSPRCWYANLHSTLREYGFTRSEYDGCIYMRKVGDAVTYVTIYVDNIVIAFNDDRTVAALKATLKKKYRITDAGRLENFLGLKI 1890
            ++ LWH+ L H ++  ++Q+        H I++  +  FC  C        K HR++      +P  P + I  D+ GP       G+KY+ VF+  F++YR +F +K K+D +     +F+  ++     T+ + V  +  DGG EF     ++  Q  G+ + T+    P+   V E +NRI+++  R++LHS DLP   W+EA   A Y LNRT  ++    SP E +F   P S+ HF  FG+ C+VH+ K+RR   K   ++   RF+ + +    YR+   +  +IVTS+ + F  E +  R  +K+              +P A  L+ ELN         C V+ K+ Q+ +    LSS                                  ++R M      ++ T     T P +  H    S D   W  A  +E  SL  N V+ LV+ P+ K V+ SRWVL  K + DG + +YK RLVAKGY Q+PGIDY  TF+PV    ++R +LS+AA + L L Q DV+TAFL G L EE+ ++QPEGF +    + V+KL +SLYGLKQ+PRCW   L   LR+ G  +S  D C++ R    +   V IYVD+ ++A +D   +    A +KK+++I   G L+ FLG+ I
Sbjct:  170 SLQLWHERLCHQNKRHVQQVLNN-----HGIKVHAQEQFCTGCVLG-----KHHRESFQSRKYRPRAPGKLIHVDLCGPMHVTSLGGSKYFLVFKDDFSRYRRVFFLKRKDD-VAQCLETFLNESR-----TAGNTVECILSDGGLEFNNAHVKDILQRRGVAMRTAMPYTPEQNGVAERENRILVETGRSMLHSKDLPLYLWAEAVNTACYVLNRTGPTTVKGKSPIELWFKRDPVSIDHFHVFGTECFVHVPKQRRR--KWEKKSVAGRFMGYCDEKDGYRIWLPDINQIVTSRDILFKPEEI--RLSSKMSVKADSSEKNEEEDDPDAEELRLELNSQWTSKEAECEVETKMEQEEDA---LSSK---------------------------------RVRKMPNYLSDYVLT---VQTPPPSSFHEAMQSVDAADWRKAMEEELHSLEENSVWTLVDPPSGKKVLDSRWVLRIKTKADGSVARYKARLVAKGYMQRPGIDYDETFSPVARFDTVRALLSIAAVERLKLQQFDVKTAFLYGALKEEVYVKQPEGFENG--TNQVYKLNRSLYGLKQAPRCWNLRLVEFLRKQGLKQSTADPCLFARMKERSKLLVAIYVDDGIVAGSDTDEMEQFLAVMKKEFQIKQ-GPLDTFLGMGI 769          
BLAST of mRNA_H-akashiwo_Contig118.29.1 vs. uniprot
Match: A0A8J6CSB6_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6CSB6_9ROSI)

HSP 1 Score: 286 bits (733), Expect = 1.390e-80
Identity = 210/636 (33.02%), Postives = 320/636 (50.31%), Query Frame = 1
Query:   10 LWHQTLAHTSESRIRQMAQQGFIPPHSIRLTDKLSFCNSCAAAAATRVKTHRKTSCGSVKPAHPIQEIGTDVAGPFP-PDRHGNKYYRVFQCQFTKYRAIFPMKTKNDNILPHFLSFVESAKRSNPDTSIDDVAAVRLDGGGEFV--EFRNFCQDLGIELLTSGRDNPDGCRV-EPQNRIILKVVRTVLHSSDLPPQFWSEAARYAVYTLNRTVS-SDSSISPYEAFFGFPASVKHFRAFGSPCWVHLQKERRGGGKLADRATEQRFLSFENSTGVYRLLSLNTGKIVTSKHVTFNEEPVIRRALTKLPNPLAVLQSELNCSVDAKLHQ-KGNFYPRLSSTTSARPTKTPPSSTSPQQPRKSSRAPPPMLRFGYKLRAMLACSFAFLGTHSEAHTNPFNLAHAKTMSDWDMWHDAAVKEYKSLVANDVFELVERPTNKNVIKSRWVLAKKF-EDGVLK-KYKGRLVAKGYSQQPGIDYAATFAPVVSAPSLRIILSLAAEQGLSLSQLDVQTAFLNGTLTEELNMEQPEGFRDPEFPDHVWKLKKSLYGLKQSPRCWYANLHSTLREYGFTRSEYDGCIYMRKVGD-AVTYVTIYVDNIVIAFNDDRTVAALKATLKKKYRITDAGRLENFLGLKI 1890
            LWH  L H SE+ + +++++G +    I    KL+FC  C      RV+  R    G       ++ I +D+ GP   P R G  Y   F   F++    F +K K+D       S  +S K      +   +  +R D G EF   EF   C+  GI    + R  P    + E  NR I++ VR +L +++LP  FW+EAA  A + +NR+ S +    +P E + G PA+    + FG P + H+       GKL  R+ +  FL ++     Y+L      K+V S+ V F+E  +       LPN L++  S    +     HQ      P++S+    R T +PP S +  + ++  + P           A L      +    +A+  P N + A +  D + W  A  +E +SL  N  ++LV+ P  K  ++ +WV  KK    GV + KYK RLVAKGYSQ PG+D+   F+PVV   S+R +L + A   L L QLDV+TAFL+G L E++ M+QPEGF   E  D+V  LKKSLYGLKQSPR WY    S +  + F RS +D C+Y +K  D +  Y+ +YVD+++IA  D   +  +KA L +++ + D G  +  LG++I
Sbjct:  334 LWHMRLGHMSENGMVELSKRGLLDGQGIC---KLNFCEHCVFGKQKRVRFTR----GIHNTKGTLEYIHSDLWGPSRVPSRGGANYMLTFIDDFSRKVWAFFLKQKSD-----VFSAFKSWKIMIEKQTGKQIKYLRTDNGLEFCSDEFNRLCKSEGIVRHLTVRHTPQQNGIAERMNRTIMEKVRCMLSNANLPKSFWAEAASTACFLINRSPSVAIEKKTPQEVWSGNPANYSDLKIFGCPAYAHVNN-----GKLEPRSIKCVFLGYKAGVKGYKLWCPENRKVVISRDVVFDETAM-------LPN-LSLKDSSNKENQKQVEHQINTESTPQVSTKIENRVTSSPPYSIAKNRTKREIKPPKKYAE------ADLVAYALNVAEDIDANQEPSNYSEAISCEDSEKWMFAMQEEMESLHKNKTWDLVKLPKGKKTVRCKWVFKKKEGTPGVEEPKYKARLVAKGYSQVPGVDFTDVFSPVVKHSSIRALLGIVAMHDLELEQLDVKTAFLHGELEEDIYMQQPEGFTVSEKEDYVCLLKKSLYGLKQSPRQWYKRFDSFMTSHDFKRSSFDSCVYFKKNNDGSFVYLLLYVDDMLIAAKDKGEIRKVKAQLSEEFEMKDLGPAKKILGMEI 938          
BLAST of mRNA_H-akashiwo_Contig118.29.1 vs. uniprot
Match: UPI001F00E299 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F00E299)

HSP 1 Score: 283 bits (724), Expect = 1.750e-80
Identity = 212/656 (32.32%), Postives = 330/656 (50.30%), Query Frame = 1
Query:   10 LWHQTLAHTSESRIRQMAQQGFIPPHSIRLTDKLSFCNSCAAAAATRVKTHRKTSCGSVKPAHPIQEIGTDVAGPFPPDRHGN-KYYRVFQCQFTKYRAIFPMKTKND--NILPHFLSFVESAKRSNPDTSIDDVAAVRLDGGGEFV--EFRNFCQDLGIELLTSGRDNPDGCRV-EPQNRIILKVVRTVLHSSDLPPQFWSEAARYAVYTLNRTVSSDSSI-SPYEAFFGFPASVKHFRAFGSPCWVHLQKERRGGGKLADRATEQRFLSFENSTGVYRLLSLNTGKIVTSKHVTFNEEPVIRRALTKLPNPLAVLQSELNCSVDAKL-----HQKGNFYPR-------LSSTTSARPTKTPPSSTSPQ----QPRKSSRAPPPMLRFGYKLRAMLACSFAFLGTHSEAHT-NPFNLAHAKTMSDWDMWHDAAVKEYKSLVANDVFELVERPTNKNVIKSRWVLAKKF----EDGVLKKYKGRLVAKGYSQQPGIDYAATFAPVVSAPSLRIILSLAAEQGLSLSQLDVQTAFLNGTLTEELNMEQPEGFRDPEFPDHVWKLKKSLYGLKQSPRCWYANLHSTLREYGFTRSEYDGCIYMRKVGD-AVTYVTIYVDNIVIAFNDDRTVAALKATLKKKYRITDAGRLENFLGLKI 1890
            LWH  L H SE  ++ ++++G +  + I   + L FC  C      R K  +     S K    +  I +D  GP   +  G  +Y+  F   F++   +F MK K++       + + VE+            +  +R D G EF   EF  FC+D GI    + RD P    V E  N+ +L+ VR +L ++ L  +FW+EA     + +NR   S   + +PYE + G PA   + RAFG   + H+ +     GKL  RA    F+ +      YR+ S +  +++ S++V F+E  +        P   + + SE N +V+ ++     H +G+  P        LS T   +P  +  SS  P     +P++S+   PP  R+GY+     A   A      E  T  P     A T ++   W  A   E +SL  N  ++LV+RP  + +I  +WV  KK      +G+  KYK R+VAKG+ Q+ G+DY   F+PVV   S+R++L++ A Q L L QLDV+T FL+G L E++ M QP+GF+DPE  D+V KLKKSLYGLKQSPR WY      + E G+ RS YD C+Y  K+ + +  Y+ +YVD+++IA  +   +  LK  L  ++ + D G  +  LG++I
Sbjct:   70 LWHMRLGHMSERGMQILSKEGLLGGYKI---NDLEFCEHCVFGKLHRTKFPKAVH--STKGT--LDYIHSDCWGPSRVEAIGGYRYFVTFIDDFSRMTWVFVMKNKSEAFKCFKQWKALVENQTGKK-------IKRLRTDNGLEFCLSEFDEFCKDEGIARHHTVRDTPQQNGVAERMNQTLLERVRCMLSNAGLNRRFWAEAISTTCFLINRAPHSGIQLKTPYEMWSGKPADYSNLRAFGCTVYYHVSE-----GKLEPRAKSGVFMGYGEGVKGYRIWSPSENRVILSRNVVFDENSLFN------PTVKSTVVSE-NSTVEKQVEQQVTHDEGDELPHDEDPQHPLSET--IQPESSTSSSFQPSMARDRPKRSNFGKPPE-RYGYEDMIAYALQVA-----EEVDTYEPSTYKEAVTCTESAQWLAAMGDEMESLHKNKTWDLVQRPPGRKIITCKWVFKKKEGMTPAEGI--KYKARVVAKGFHQREGVDYNEIFSPVVRHTSIRVLLAMVAHQDLELEQLDVKTTFLHGELEEDIYMTQPDGFQDPEKEDYVCKLKKSLYGLKQSPRQWYKRFDGFMIEIGYNRSPYDCCVYHSKLKNGSYIYLVLYVDDMLIAAENKSDIQRLKGLLSAEFEMKDLGAAKKILGMEI 689          
BLAST of mRNA_H-akashiwo_Contig118.29.1 vs. uniprot
Match: A0A6S7GU81_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GU81_PARCT)

HSP 1 Score: 284 bits (727), Expect = 2.270e-80
Identity = 202/650 (31.08%), Postives = 317/650 (48.77%), Query Frame = 1
Query:    7 DLWHQTLAHTSESRIRQMAQQGFIPPHSIRLTDKLSFCNSCAAAAATRVKTHRKTSCGSVKPAHPIQEIGTDVAGPFPPDR-HGNKYYRVFQCQFTKYRAIFPMKTKNDNILPHFLSFVESAKRSNPDTSIDDVAAVRLDGGGEFV--EFRNFCQDLGIELLTSGRDNPDGCRV-EPQNRIILKVVRTVLHSSDLPPQFWSEAARYAVYTLNR--TVSSDSSISPYEAFFGFPASVKHFRAFGSPCWVHLQKERRGGGKLADRATEQRFLSFENSTGVYRLLSLNTGKIVTSKHVTFNEEPVIRRA----LTKLPNPLAVLQSE-----------LNCSVDAKLHQKGNFYPRLSSTTSARPTKTPPSSTSPQQPRKSSRAPPPMLRFGYKLRAMLACSFAFLGTHSEAHTNPFNLAHAKTMSDWDMWHDAAVKEYKSLVANDVFELVERPTNKNVIKSRWVLAKKFE-DGVLKKYKGRLVAKGYSQQPGIDYAATFAPVVSAPSLRIILSLAAEQGLSLSQLDVQTAFLNGTLTEELNMEQPEGFRDPEFPDHVWKLKKSLYGLKQSPRCWYANLHSTLREYGFTRSEYDGCIYMRKVGDAVTYVTIYVDNIVIAFNDDRTVAALKATLKKKYRITDAGRLENFLGLKI 1890
            DLWHQ   H S   +R +  Q  +     + T +  FC  CA     R    ++ +    + +  +  I +DV GP   +   GNKY+  F    +++ A++ MKTK D +L  F  +   A  +N   +   +  +R D GGE+   EF N+ ++ GI+   S    P    V E  NR I +  R+++H++ L  +FW+EA   AV   NR  TV+ D+ ++PYE F      V +F+ FG   ++H+ K+    G    R      + F+     YRL    T K+  S+ V F+E+  I++     +  L + L   Q E           +    D   H +G   P +S  T              QQPR+S+R   P  R G  +      +         +   P  +  A   SD + W  A   EY + + N+ + L   P  +  I  RWV   K+  DG ++++K RLVAKGYSQ+PG+DY  TF+PV    S+R +L++A +  L + Q+DV TAFLNG L EE+ M+QPEG+      D V KL KS+YGLKQS RCWY  +   L+  G+ +S  D C+Y+++ GD +  + +YVD+++ A N  R +   K  L+K++ +   G +   LG+++
Sbjct:  422 DLWHQRYGHLSMKNLRLLRDQKLVTGLDFQSTKESDFCEGCAQGKQKRAPFPKEQA---TRASEILGIIHSDVCGPMQENSLGGNKYFVTFIDDKSRFTAVYFMKTK-DQVLDKFKEY--EAMVTN--ITGKKIKILRSDNGGEYTSKEFVNYLKEKGIQHQLSVPRTPQQNGVAERMNRTIQETARSMIHNAGLDTKFWAEAVCTAVIVRNRCPTVAVDN-MTPYECFNDKKPDVSNFKVFGCKAYMHVLKKPERSGIRRPRNVYLLDIVFQVKG--YRLYDPKTRKLHISRDVLFDEDEFIQQKKFMQIVNLNDSLPEDQQEPQENKPSSEHVIPGDQDTVDHDEGTEEPSISRETEVE-----------QQPRRSTRIREPPDRHGVVITGNWWQNNVACINSEFSPEEPTTIREALNCSDKEQWKQALDNEYSAHIKNNTWTLGNLPEGRKAIDCRWVFKVKYNADGSVERHKARLVAKGYSQEPGLDYDETFSPVAKYTSIRSLLAIAKQLDLEVHQMDVSTAFLNGELEEEIYMKQPEGYVKEGEEDLVCKLNKSIYGLKQSSRCWYNTIDQFLKNSGYVQSSSDPCMYIKREGDDIMLIALYVDDLIPASNSKRMLHKEKEALRKRFEMKYLGEVHYCLGIQV 1049          
BLAST of mRNA_H-akashiwo_Contig118.29.1 vs. uniprot
Match: A0A2B4R8Q4_STYPI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4R8Q4_STYPI)

HSP 1 Score: 283 bits (724), Expect = 3.780e-80
Identity = 199/639 (31.14%), Postives = 314/639 (49.14%), Query Frame = 1
Query:    7 DLWHQTLAHTSESRIRQMAQQGFIPPHSIRLTDKLSFCNSCAAAAATRVKTHRKTSCGSVKPAHPIQEIGTDVAGPF-PPDRHGNKYYRVFQCQFTKYRAIFPMKTKNDNILPHFLSFVESAKRSNPDTSIDDVAAVRLDGGGEFV--EFRNFCQDLGI--ELLTSGRDNPDGCRVEPQNRIILKVVRTVLHSSDLPPQFWSEAARYAVYTLNR--TVSSDSSISPYEAFFGFPASVKHFRAFGSPCWVHLQ-KERRGGGKLADRATEQRFLSFENSTGVYRLLSLNTGKIVTSKHVTFNEEPV-IRRALTKLPNPLAVLQSELNCSVDAKLHQKGNFYPRLSSTTSARPTKTPPSSTSPQQPRKSSRAPPPMLRFGYKLRAMLACSFAF-LGTHSEAHTNPFNLAHAKTMSDWDMWHDAAVKEYKSLVANDVFELVERPTNKNVIKSRWVLAKKFE-DGVLKKYKGRLVAKGYSQQPGIDYAATFAPVVSAPSLRIILSLAAEQGLSLSQLDVQTAFLNGTLTEELNMEQPEGFRDPEFPDHVWKLKKSLYGLKQSPRCWYANLHSTLREYGFTRSEYDGCIYMRKVGDAVTYVTIYVDNIVIAFNDDRTVAALKATLKKKYRITDAGRLENFLGLKI 1890
            DLWHQ L H  E R+++  +   +   +I+   +LSFC  C A    R       + G ++    +Q + +DV GP   P   G KY+  F   +++  A+  MK K++ +L  F+ F  S            +  +R D GGE++  E RN+ +  GI  EL        +G   E  NR +++  R+++  + L   FW+EA   A Y  NR  T +   + +PYE ++     V H R FG   + H+Q  ERR   KL  ++ + RF+ +  ++  YRL      K+   + V FNE     +RA+T  P+P      +                                   SP +PR+S R     +R+GY   A  A      +  H      P ++  A++      W  A   EY SL+ N  + LVE P  +  +  +WV   K   DG ++++K  LVAKGY+Q+ GIDY  TF+PVV   S+R +L+ A +  L + Q+DV+TAFLNG L EE+ M+QPEG+  P     V KL+KSLYGLKQS RCW   L   + + GF ++  D C+++RK  DA+T   ++VD+++I   +   + ++K +LK ++++ D G L  ++G+ I
Sbjct:  138 DLWHQRLGHVHELRLKKCVESESVRGINIKKITELSFCEGCLAGKMCRKPF---PAVGEIRSTRRLQLVHSDVCGPMHTPSIGGAKYFVTFIDDYSRCCAVHFMKHKSE-VLEKFVEFEASVTNDVGKA----IGTLRTDNGGEYLSTELRNYLKVKGIRHELTVPHSPQQNGV-AERMNRTLVESARSMIAHAALSDIFWAEAVSTAAYVRNRLPTTALKENETPYERWYRRKPDVGHLRVFGCMAYAHVQGSERR---KLDKKSRKIRFVGYSLTSKGYRLFDETNRKMYIRRDVEFNENDFGQKRAMTTEPDPTREEAEQXXXXXXXXXXXXXXXXXXXXD--------------SPGEPRRSVRTRKAPVRYGYNEYAKTATHRVHHVAYHLSGIDEPTSIQEARSGDHAAEWKVATDSEYNSLIENKTWRLVELPPGRKAVGCKWVFKLKHSCDGTVERFKAGLVAKGYTQKYGIDYDETFSPVVRFSSIRYLLAFAVQNDLLIHQMDVETAFLNGKLDEEIYMQQPEGYMKPGEEHLVCKLEKSLYGLKQSSRCWNKVLRECIEKIGFIQASEDPCVFIRK--DALTITGVHVDDLMILARNITEMRSVKDSLKLQFKMKDMGELHYYVGVCI 748          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig118.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y1P1_HETAK1.350e-13739.16Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A1X7U495_AMPQE3.890e-8432.07Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A438FVW7_VITVI1.340e-8331.24Retrovirus-related Pol polyprotein from transposon... [more]
A0A085MW59_9BILA9.410e-8332.82Uncharacterized protein (Fragment) n=1 Tax=Trichur... [more]
A0A8K1FHK1_PYTOL1.130e-8030.85Uncharacterized protein n=3 Tax=Pythium oligandrum... [more]
A0A1Y3EJI6_9BILA1.220e-8032.63Integrase core domain protein n=1 Tax=Trichinella ... [more]
A0A8J6CSB6_9ROSI1.390e-8033.02Integrase catalytic domain-containing protein n=1 ... [more]
UPI001F00E2991.750e-8032.32DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A6S7GU81_PARCT2.270e-8031.08Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A2B4R8Q4_STYPI3.780e-8031.14Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig118contigH-akashiwo_Contig118:915208..917097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog400682.PAC_15712908
PFAMsDUF4219,MBD,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size1890
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.22e-85
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BI7U@33208|Metazoa
DescriptionEncoded by
Cds size1887
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387108.9845638-UTR-H-akashiwo_Contig118:915207..9152101681387108.9845638-UTR-H-akashiwo_Contig118:915207..915210Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig118 915208..915210 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387108.996459-CDS-H-akashiwo_Contig118:915210..9170971681387108.996459-CDS-H-akashiwo_Contig118:915210..917097Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig118 915211..917097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig118.29.1prot_H-akashiwo_Contig118.29.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig118 915211..917097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig118.29.1

>prot_H-akashiwo_Contig118.29.1 ID=prot_H-akashiwo_Contig118.29.1|Name=mRNA_H-akashiwo_Contig118.29.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=629bp
MDLWHQTLAHTSESRIRQMAQQGFIPPHSIRLTDKLSFCNSCAAAAATRV
KTHRKTSCGSVKPAHPIQEIGTDVAGPFPPDRHGNKYYRVFQCQFTKYRA
IFPMKTKNDNILPHFLSFVESAKRSNPDTSIDDVAAVRLDGGGEFVEFRN
FCQDLGIELLTSGRDNPDGCRVEPQNRIILKVVRTVLHSSDLPPQFWSEA
ARYAVYTLNRTVSSDSSISPYEAFFGFPASVKHFRAFGSPCWVHLQKERR
GGGKLADRATEQRFLSFENSTGVYRLLSLNTGKIVTSKHVTFNEEPVIRR
ALTKLPNPLAVLQSELNCSVDAKLHQKGNFYPRLSSTTSARPTKTPPSST
SPQQPRKSSRAPPPMLRFGYKLRAMLACSFAFLGTHSEAHTNPFNLAHAK
TMSDWDMWHDAAVKEYKSLVANDVFELVERPTNKNVIKSRWVLAKKFEDG
VLKKYKGRLVAKGYSQQPGIDYAATFAPVVSAPSLRIILSLAAEQGLSLS
QLDVQTAFLNGTLTEELNMEQPEGFRDPEFPDHVWKLKKSLYGLKQSPRC
WYANLHSTLREYGFTRSEYDGCIYMRKVGDAVTYVTIYVDNIVIAFNDDR
TVAALKATLKKKYRITDAGRLENFLGLKI
back to top

mRNA from alignment at H-akashiwo_Contig118:915208..917097+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig118.29.1 ID=mRNA_H-akashiwo_Contig118.29.1|Name=mRNA_H-akashiwo_Contig118.29.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1890bp|location=Sequence derived from alignment at H-akashiwo_Contig118:915208..917097+ (Heterosigma akashiwo CCMP452)
ACAATGGACTTATGGCATCAAACACTAGCCCATACTAGTGAATCAAGAAT CAGACAAATGGCGCAACAGGGGTTCATCCCTCCTCACTCGATCAGACTGA CAGACAAGTTGAGTTTTTGCAATAGTTGTGCGGCAGCAGCAGCCACCAGA GTAAAGACGCACAGGAAAACTTCATGTGGCTCGGTGAAACCAGCGCATCC CATTCAAGAGATTGGTACTGATGTTGCTGGTCCCTTCCCACCTGATCGGC ATGGCAACAAATACTACCGTGTCTTCCAGTGTCAATTCACTAAGTATAGG GCAATCTTCCCAATGAAAACAAAAAACGATAACATTCTGCCGCATTTTCT CTCCTTTGTGGAATCCGCAAAAAGATCCAATCCTGACACTAGCATCGACG ACGTGGCTGCAGTACGATTGGATGGTGGTGGTGAATTTGTGGAGTTTAGA AATTTCTGTCAGGATCTCGGAATTGAGCTGTTGACATCTGGCCGGGATAA TCCCGATGGCTGCAGAGTAGAACCACAGAACAGAATTATTCTGAAAGTGG TACGTACTGTCCTTCATTCTTCTGATCTTCCTCCTCAATTCTGGTCTGAA GCTGCTCGATATGCAGTCTACACTCTGAACAGAACTGTATCTTCTGACTC TTCTATATCCCCTTATGAGGCCTTCTTTGGATTCCCAGCTTCTGTCAAGC ACTTTAGAGCGTTTGGATCTCCATGCTGGGTGCATTTGCAAAAGGAGCGA AGAGGCGGTGGAAAATTGGCGGATCGGGCTACGGAGCAAAGATTCTTATC GTTTGAAAATTCTACTGGTGTGTACAGACTTCTGTCTCTTAACACTGGAA AAATCGTGACCTCCAAACACGTCACTTTTAATGAAGAGCCAGTAATCCGG CGGGCACTTACAAAACTGCCAAATCCATTGGCTGTTCTACAATCTGAGCT GAACTGCAGTGTTGACGCCAAACTTCATCAAAAGGGAAACTTCTATCCTC GCCTATCTTCGACGACTTCTGCAAGACCAACTAAAACTCCTCCTTCATCA ACTTCTCCACAACAACCAAGAAAGTCATCCCGTGCACCACCTCCTATGTT ACGGTTTGGATACAAACTAAGGGCAATGCTGGCTTGTAGCttCGCCTTTC TGGGTACTCATTCTGAGGCTCATACCAACCCGTTCAACTTGGCACATGCA AAGACCATGTCAGACTGGGACATGTGGCATGATGCTGCGGTGAAAGAGTA TAAATCTCTTGTGGCCAACGATGTATTTGAGCTGGTGGAAAGGCCAACAA ACAAAAACGTAATCAAATCAAGGTGGGTTTTAGCAAAGAAATTCGAGGAT GGGGTCCTGAAGAAATATAAAGGGAGATTAGTGGCTAAAGGATACTCCCA GCAACCAGGCATCGATTATGCAGCTACCTTTGCTCCTGTAGTATCAGCTC CCTCACTACGCATTATCTTGTCTTTGGCTGCGGAACAGGGACTTTCGCTG AGTCAACTCGATGTTCAAACTGCGTTTCTCAATGGAACGCTCACGGAAGA ACTTAACATGGAACAACCTGAAGGCTTTCGTGATCCTGAGTTTCCTGATC ATGTGTGGAAGCTTAAAAAGTCTCTGTATGGTCTCAAACAGTCACCACGT TGCTGGTACGCTAACCTGCATTCAACCTTGAGGGAGTATGGATTCACTCG CAGTGAATATGATGGCTGCATCTATATGAGGAAAGTCGGTGATGCTGTGA CTTATGTCACCATCTATGTGGACAATATTGTTATCGCTTTTAACGATGAC AGAACGGTGGCCGCACTCAAGGCAACTCTTAAGAAAAAATATAGGATTAC GGATGCTGGCAGGCTGGAAAACTTTCTGGGACTGAAGATA
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig118:915208..917097+

>mRNA_H-akashiwo_Contig118.29.1 ID=mRNA_H-akashiwo_Contig118.29.1|Name=mRNA_H-akashiwo_Contig118.29.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1887bp|location=Sequence derived from alignment at H-akashiwo_Contig118:915208..917097+ (Heterosigma akashiwo CCMP452)
ATGGACTTATGGCATCAAACACTAGCCCATACTAGTGAATCAAGAATCAG
ACAAATGGCGCAACAGGGGTTCATCCCTCCTCACTCGATCAGACTGACAG
ACAAGTTGAGTTTTTGCAATAGTTGTGCGGCAGCAGCAGCCACCAGAGTA
AAGACGCACAGGAAAACTTCATGTGGCTCGGTGAAACCAGCGCATCCCAT
TCAAGAGATTGGTACTGATGTTGCTGGTCCCTTCCCACCTGATCGGCATG
GCAACAAATACTACCGTGTCTTCCAGTGTCAATTCACTAAGTATAGGGCA
ATCTTCCCAATGAAAACAAAAAACGATAACATTCTGCCGCATTTTCTCTC
CTTTGTGGAATCCGCAAAAAGATCCAATCCTGACACTAGCATCGACGACG
TGGCTGCAGTACGATTGGATGGTGGTGGTGAATTTGTGGAGTTTAGAAAT
TTCTGTCAGGATCTCGGAATTGAGCTGTTGACATCTGGCCGGGATAATCC
CGATGGCTGCAGAGTAGAACCACAGAACAGAATTATTCTGAAAGTGGTAC
GTACTGTCCTTCATTCTTCTGATCTTCCTCCTCAATTCTGGTCTGAAGCT
GCTCGATATGCAGTCTACACTCTGAACAGAACTGTATCTTCTGACTCTTC
TATATCCCCTTATGAGGCCTTCTTTGGATTCCCAGCTTCTGTCAAGCACT
TTAGAGCGTTTGGATCTCCATGCTGGGTGCATTTGCAAAAGGAGCGAAGA
GGCGGTGGAAAATTGGCGGATCGGGCTACGGAGCAAAGATTCTTATCGTT
TGAAAATTCTACTGGTGTGTACAGACTTCTGTCTCTTAACACTGGAAAAA
TCGTGACCTCCAAACACGTCACTTTTAATGAAGAGCCAGTAATCCGGCGG
GCACTTACAAAACTGCCAAATCCATTGGCTGTTCTACAATCTGAGCTGAA
CTGCAGTGTTGACGCCAAACTTCATCAAAAGGGAAACTTCTATCCTCGCC
TATCTTCGACGACTTCTGCAAGACCAACTAAAACTCCTCCTTCATCAACT
TCTCCACAACAACCAAGAAAGTCATCCCGTGCACCACCTCCTATGTTACG
GTTTGGATACAAACTAAGGGCAATGCTGGCTTGTAGCttCGCCTTTCTGG
GTACTCATTCTGAGGCTCATACCAACCCGTTCAACTTGGCACATGCAAAG
ACCATGTCAGACTGGGACATGTGGCATGATGCTGCGGTGAAAGAGTATAA
ATCTCTTGTGGCCAACGATGTATTTGAGCTGGTGGAAAGGCCAACAAACA
AAAACGTAATCAAATCAAGGTGGGTTTTAGCAAAGAAATTCGAGGATGGG
GTCCTGAAGAAATATAAAGGGAGATTAGTGGCTAAAGGATACTCCCAGCA
ACCAGGCATCGATTATGCAGCTACCTTTGCTCCTGTAGTATCAGCTCCCT
CACTACGCATTATCTTGTCTTTGGCTGCGGAACAGGGACTTTCGCTGAGT
CAACTCGATGTTCAAACTGCGTTTCTCAATGGAACGCTCACGGAAGAACT
TAACATGGAACAACCTGAAGGCTTTCGTGATCCTGAGTTTCCTGATCATG
TGTGGAAGCTTAAAAAGTCTCTGTATGGTCTCAAACAGTCACCACGTTGC
TGGTACGCTAACCTGCATTCAACCTTGAGGGAGTATGGATTCACTCGCAG
TGAATATGATGGCTGCATCTATATGAGGAAAGTCGGTGATGCTGTGACTT
ATGTCACCATCTATGTGGACAATATTGTTATCGCTTTTAACGATGACAGA
ACGGTGGCCGCACTCAAGGCAACTCTTAAGAAAAAATATAGGATTACGGA
TGCTGGCAGGCTGGAAAACTTTCTGGGACTGAAGATA
back to top