mRNA_H-akashiwo_Contig118.26.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig118.26.1
Unique NamemRNA_H-akashiwo_Contig118.26.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig118.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig118contigH-akashiwo_Contig118:774421..774884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog65672.G4TA30
Preferred nameMTM1
PFAMsMito_carr
Model size318
Max annot lvl4751|Fungi
KEGG koko:K15119
KEGG TC2.A.29
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0003674,GO:0005215,GO:0005384,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006828,GO:0006839,GO:0008144,GO:0008150,GO:0008324,GO:0015075,GO:0015318,GO:0015711,GO:0015748,GO:0015850,GO:0015893,GO:0016020,GO:0016021,GO:0016530,GO:0019842,GO:0019866,GO:0022857,GO:0022890,GO:0030001,GO:0030170,GO:0031090,GO:0031224,GO:0031919,GO:0031921,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0036094,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046873,GO:0046915,GO:0048037,GO:0050662,GO:0050896,GO:0051179,GO:0051180,GO:0051181,GO:0051182,GO:0051234,GO:0055085,GO:0070279,GO:0071421,GO:0071702,GO:0071705,GO:0097159,GO:0098655,GO:0098660,GO:0098662,GO:0140104,GO:1901363,GO:1990540,GO:1990542
Exons2
Evalue0.000324
EggNOG OGsKOG0761@1|root,KOG0761@2759|Eukaryota,38GBT@33154|Opisthokonta,3NTYN@4751|Fungi,3V0QB@5204|Basidiomycota,227GK@155619|Agaricomycetes,3H0QP@355688|Agaricomycetes incertae sedis
DescriptionMitochondrial carrier
Cds size294
COG categoryC
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387107.6321244-CDS-H-akashiwo_Contig118:774420..7745101681387107.6321244-CDS-H-akashiwo_Contig118:774420..774510Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig118 774421..774510 -
1681387107.6464028-CDS-H-akashiwo_Contig118:774656..7748601681387107.6464028-CDS-H-akashiwo_Contig118:774656..774860Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig118 774657..774860 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387107.6551278-UTR-H-akashiwo_Contig118:774860..7748841681387107.6551278-UTR-H-akashiwo_Contig118:774860..774884Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig118 774861..774884 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig118.26.1prot_H-akashiwo_Contig118.26.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig118 774421..774860 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig118.26.1

>prot_H-akashiwo_Contig118.26.1 ID=prot_H-akashiwo_Contig118.26.1|Name=mRNA_H-akashiwo_Contig118.26.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=98bp
MADSDSSRFNEKKTNLKVKLYSASAGALLTVFAVTPLDVVKTRMQTELEG
KPMASVKSASVRTAMNFQCTECGSLILQRRQLCKISNILCQAPSNVLW
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mRNA from alignment at H-akashiwo_Contig118:774421..774884-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig118.26.1 ID=mRNA_H-akashiwo_Contig118.26.1|Name=mRNA_H-akashiwo_Contig118.26.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=464bp|location=Sequence derived from alignment at H-akashiwo_Contig118:774421..774884- (Heterosigma akashiwo CCMP452)
TCACACATCTGTTGACCGACCATCATGGCAGACTCAGATAGTAGCAGGTT
CAACGAAAAGAAAACCAACTTGAAGGTAAAACTGTATTCAGCCTCGGCAG
GAGCGCTTCTTACCGTTTTCGCAGTCACACCCTTGGACGTAGTCAAAACA
AGAATGCAGACTGAACTGGAAGGCAAACCTATGGCATCTGTAAAGAGTGC
TTCAGTCCGAACAGCAATGAATTTCCAGGCAGGCATATAAATTGATTCCA
GCGCATACTAGTGTGAAAATTCTCAGACTATATTACTTTTGTTTTTGCTA
ATGTTGCAGCAAACACTCGGTCATTTTCTGCACCTGCCTTTTGTCCTTAT
ACGCCTGACTTTCGCTGAAAACAGTGTACAGAATGTGGTTCCTTAATCCT
CCAGCGGAGACAACTTTGTAAAATTTCCAATATACTCTGCCAAGCCCCAT
CCAACGTCTTGTGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig118:774421..774884-

>mRNA_H-akashiwo_Contig118.26.1 ID=mRNA_H-akashiwo_Contig118.26.1|Name=mRNA_H-akashiwo_Contig118.26.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=294bp|location=Sequence derived from alignment at H-akashiwo_Contig118:774421..774884- (Heterosigma akashiwo CCMP452)
ATGGCAGACTCAGATAGTAGCAGGTTCAACGAAAAGAAAACCAACTTGAA
GGTAAAACTGTATTCAGCCTCGGCAGGAGCGCTTCTTACCGTTTTCGCAG
TCACACCCTTGGACGTAGTCAAAACAAGAATGCAGACTGAACTGGAAGGC
AAACCTATGGCATCTGTAAAGAGTGCTTCAGTCCGAACAGCAATGAATTT
CCAGTGTACAGAATGTGGTTCCTTAATCCTCCAGCGGAGACAACTTTGTA
AAATTTCCAATATACTCTGCCAAGCCCCATCCAACGTCTTGTGG
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