mRNA_H-akashiwo_Contig118.23.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig118.23.1
Unique NamemRNA_H-akashiwo_Contig118.23.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig118.23.1 vs. uniprot
Match: A0A024FW00_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FW00_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.060e-7
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   91 VSAEAKQLLAYIGRYVPKDIELEAHLKPFVPEYIPAVN 204
            VSAE ++L  YIGRY P++IELEA LK F+PEYIPAV 
Sbjct:  141 VSAEVRELFQYIGRYKPQEIELEAQLKCFIPEYIPAVG 178
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BLAST of mRNA_H-akashiwo_Contig118.23.1 vs. uniprot
Match: A0A7R9UW76_DIALT (Hypothetical protein (Fragment) n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UW76_DIALT)

HSP 1 Score: 55.8 bits (133), Expect = 2.520e-7
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   67 PAGMDLPHVSAEAKQLLAYIGRYVPKDIELEAHLKPFVPEYIPAVN 204
            PA  +  +VS+E K+L  YIGRY P +IELE  +KPF+P+YIPAV 
Sbjct:  269 PAEYENLNVSSEIKELFQYIGRYKPHNIELETKMKPFIPDYIPAVG 314
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BLAST of mRNA_H-akashiwo_Contig118.23.1 vs. uniprot
Match: A0A024G528_9STRA (Fcf2 domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G528_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.580e-7
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   91 VSAEAKQLLAYIGRYVPKDIELEAHLKPFVPEYIPAVN 204
            VSAE ++L  YIGRY P++IELEA LK F+PEYIPAV 
Sbjct:  698 VSAEVRELFQYIGRYKPQEIELEAQLKCFIPEYIPAVG 735
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BLAST of mRNA_H-akashiwo_Contig118.23.1 vs. uniprot
Match: UPI001F085220 (intraflagellar transport protein 46 homolog isoform X1 n=2 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F085220)

HSP 1 Score: 55.1 bits (131), Expect = 4.540e-7
Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:   49 PEKLSVPAGMDLPHVSAEAKQLLAYIGRYVPKDIELEAHLKPFVPEYIPAVN 204
            PE    PA  D   VSAE K+L  YI RY P++IEL+  LKPF+P++IPAV 
Sbjct:  112 PEGAYDPADYDHVPVSAEIKELFQYITRYTPQNIELDHKLKPFIPDFIPAVG 163
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BLAST of mRNA_H-akashiwo_Contig118.23.1 vs. uniprot
Match: A0A183WYI4_TRIRE (Intraflagellar transport protein 46 homolog n=1 Tax=Trichobilharzia regenti TaxID=157069 RepID=A0A183WYI4_TRIRE)

HSP 1 Score: 52.0 bits (123), Expect = 9.230e-7
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   67 PAGMDLPHVSAEAKQLLAYIGRYVPKDIELEAHLKPFVPEYIPAVN 204
            PA  +   VS+E K++  YI RY P+ IELE  LKPF+P+Y+PAV 
Sbjct:    9 PADFEHLAVSSEIKEIFEYIQRYTPQTIELETKLKPFIPDYMPAVG 54
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BLAST of mRNA_H-akashiwo_Contig118.23.1 vs. uniprot
Match: L1IU53_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IU53_GUITC)

HSP 1 Score: 53.5 bits (127), Expect = 1.040e-6
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:   91 VSAEAKQLLAYIGRYVPKDIELEAHLKPFVPEYIPAVN 204
            VS E ++L  YIGRY P+ IELE  LKPF+PEYIPA+ 
Sbjct:   14 VSDEIRELFQYIGRYKPQTIELETKLKPFIPEYIPAIG 51
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BLAST of mRNA_H-akashiwo_Contig118.23.1 vs. uniprot
Match: A0A813YN72_ADIRI (Intraflagellar transport protein 46 homolog (Fragment) n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A813YN72_ADIRI)

HSP 1 Score: 53.9 bits (128), Expect = 1.100e-6
Identity = 29/53 (54.72%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:   46 DPEKLSVPAGMDLPHVSAEAKQLLAYIGRYVPKDIELEAHLKPFVPEYIPAVN 204
            DP         DLP VSAE K L  YI +Y P+DI LE  LKPFVPEY+PA+ 
Sbjct:  145 DPNAYDPKMYRDLP-VSAEIKDLFKYIDKYQPQDIILETKLKPFVPEYVPAIG 196
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BLAST of mRNA_H-akashiwo_Contig118.23.1 vs. uniprot
Match: A0A814B7K1_ADIRI (Intraflagellar transport protein 46 homolog n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A814B7K1_ADIRI)

HSP 1 Score: 53.9 bits (128), Expect = 1.180e-6
Identity = 29/53 (54.72%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:   46 DPEKLSVPAGMDLPHVSAEAKQLLAYIGRYVPKDIELEAHLKPFVPEYIPAVN 204
            DP         DLP VSAE K L  YI +Y P+DI LE  LKPFVPEY+PA+ 
Sbjct:  109 DPNAYDPKMYRDLP-VSAEIKDLFKYIDKYQPQDIILETKLKPFVPEYVPAIG 160
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BLAST of mRNA_H-akashiwo_Contig118.23.1 vs. uniprot
Match: A0A504YQ64_FASGI (Intraflagellar transport protein 46 homolog n=3 Tax=Fasciolidae TaxID=27843 RepID=A0A504YQ64_FASGI)

HSP 1 Score: 53.5 bits (127), Expect = 1.570e-6
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   67 PAGMDLPHVSAEAKQLLAYIGRYVPKDIELEAHLKPFVPEYIPAVN 204
            PA  +   VSAE K++  YI RY P+ IELE HLKPF+P+YI AV 
Sbjct:  113 PADYEHLAVSAEIKEMFEYIQRYTPQVIELETHLKPFIPDYIAAVG 158
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BLAST of mRNA_H-akashiwo_Contig118.23.1 vs. uniprot
Match: A0A835XW09_9CHLO (Uncharacterized protein n=2 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XW09_9CHLO)

HSP 1 Score: 53.5 bits (127), Expect = 1.580e-6
Identity = 22/40 (55.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   88 HVSAEAKQLLAYIGRYVPKDIELEAHLKPFVPEYIPAVNG 207
            +V  + ++L +YIGRY P+ +ELE  LKPF+P+YIPAV G
Sbjct:  107 NVPDDVRELFSYIGRYKPQTVELETKLKPFIPDYIPAVGG 146
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig118.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A024FW00_9STRA2.060e-768.42Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A7R9UW76_DIALT2.520e-756.52Hypothetical protein (Fragment) n=3 Tax=Diacronema... [more]
A0A024G528_9STRA2.580e-768.42Fcf2 domain-containing protein n=1 Tax=Albugo cand... [more]
UPI001F0852204.540e-753.85intraflagellar transport protein 46 homolog isofor... [more]
A0A183WYI4_TRIRE9.230e-752.17Intraflagellar transport protein 46 homolog n=1 Ta... [more]
L1IU53_GUITC1.040e-663.16Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A813YN72_ADIRI1.100e-654.72Intraflagellar transport protein 46 homolog (Fragm... [more]
A0A814B7K1_ADIRI1.180e-654.72Intraflagellar transport protein 46 homolog n=1 Ta... [more]
A0A504YQ64_FASGI1.570e-656.52Intraflagellar transport protein 46 homolog n=3 Ta... [more]
A0A835XW09_9CHLO1.580e-655.00Uncharacterized protein n=2 Tax=Edaphochlamys deba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig118contigH-akashiwo_Contig118:705513..705734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog27923.ML03104a-PA
Preferred nameIFT46
PFAMsIFT46_B_C
Model size222
Max annot lvl33208|Metazoa
KEGG koko:K19682
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0001654,GO:0001655,GO:0001822,GO:0003002,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005886,GO:0005929,GO:0006810,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007389,GO:0007423,GO:0008022,GO:0008104,GO:0008150,GO:0009799,GO:0009855,GO:0009953,GO:0009987,GO:0010970,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030425,GO:0030705,GO:0030990,GO:0030992,GO:0031090,GO:0031253,GO:0031344,GO:0031503,GO:0031514,GO:0031647,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033043,GO:0035082,GO:0035735,GO:0036064,GO:0036477,GO:0040011,GO:0042073,GO:0042886,GO:0042995,GO:0043005,GO:0043010,GO:0043025,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044087,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044441,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0044782,GO:0045184,GO:0046907,GO:0048262,GO:0048264,GO:0048513,GO:0048731,GO:0048793,GO:0048856,GO:0048870,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051674,GO:0051716,GO:0060041,GO:0060170,GO:0060271,GO:0060285,GO:0060491,GO:0065007,GO:0065008,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072001,GO:0097447,GO:0097458,GO:0097542,GO:0097546,GO:0098588,GO:0098590,GO:0099111,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1902017,GO:1902115,GO:1905515
Exons1
Evalue2.57e-07
EggNOG OGs2CDGQ@1|root,2QPNA@2759|Eukaryota,39N9V@33154|Opisthokonta,3B9PT@33208|Metazoa
DescriptionIntraflagellar transport protein 46
Cds size222
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387108.7760875-CDS-H-akashiwo_Contig118:705512..7057341681387108.7760875-CDS-H-akashiwo_Contig118:705512..705734Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig118 705513..705734 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig118.23.1prot_H-akashiwo_Contig118.23.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig118 705513..705734 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig118.23.1

>prot_H-akashiwo_Contig118.23.1 ID=prot_H-akashiwo_Contig118.23.1|Name=mRNA_H-akashiwo_Contig118.23.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=74bp
MGHADDKIENEENKEDPEKLSVPAGMDLPHVSAEAKQLLAYIGRYVPKDI
ELEAHLKPFVPEYIPAVNGPPLEV
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mRNA from alignment at H-akashiwo_Contig118:705513..705734+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig118.23.1 ID=mRNA_H-akashiwo_Contig118.23.1|Name=mRNA_H-akashiwo_Contig118.23.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=222bp|location=Sequence derived from alignment at H-akashiwo_Contig118:705513..705734+ (Heterosigma akashiwo CCMP452)
ATGGGTCATGCAGATGATAAAATTGAGAATGAAGAAAATAAGGAAGACCC
AGAAAAACTTAGCGTGCCAGCTGGCATGGATCTTCCCCATGTATCTGCAG
AGGCAAAACAACTGCTGGCATACATCGGTCGATATGTGCCGAAGGACATT
GAGCTGGAGGCTCACTTGAAACCCTTTGTACCGGAGTACATCCCAGCCGT
GAATGGCCCACCTTTGGAGGTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig118:705513..705734+

>mRNA_H-akashiwo_Contig118.23.1 ID=mRNA_H-akashiwo_Contig118.23.1|Name=mRNA_H-akashiwo_Contig118.23.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=222bp|location=Sequence derived from alignment at H-akashiwo_Contig118:705513..705734+ (Heterosigma akashiwo CCMP452)
ATGGGTCATGCAGATGATAAAATTGAGAATGAAGAAAATAAGGAAGACCC
AGAAAAACTTAGCGTGCCAGCTGGCATGGATCTTCCCCATGTATCTGCAG
AGGCAAAACAACTGCTGGCATACATCGGTCGATATGTGCCGAAGGACATT
GAGCTGGAGGCTCACTTGAAACCCTTTGTACCGGAGTACATCCCAGCCGT
GAATGGCCCACCTTTGGAGGTG
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