mRNA_H-akashiwo_Contig1175.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1175.8.1
Unique NamemRNA_H-akashiwo_Contig1175.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1175.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1175contigH-akashiwo_Contig1175:245918..247044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size204
Hectar predicted targeting categoryother localisation
Exons3
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387106.1703131-CDS-H-akashiwo_Contig1175:245917..2459931681387106.1703131-CDS-H-akashiwo_Contig1175:245917..245993Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1175 245918..245993 +
1681387106.184638-CDS-H-akashiwo_Contig1175:246229..2463311681387106.184638-CDS-H-akashiwo_Contig1175:246229..246331Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1175 246230..246331 +
1681387106.1936665-CDS-H-akashiwo_Contig1175:247018..2470441681387106.1936665-CDS-H-akashiwo_Contig1175:247018..247044Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1175 247019..247044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1175.8.1prot_H-akashiwo_Contig1175.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1175 245918..247044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1175.8.1

>prot_H-akashiwo_Contig1175.8.1 ID=prot_H-akashiwo_Contig1175.8.1|Name=mRNA_H-akashiwo_Contig1175.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=68bp
RRAAGLRQQPPARRHAQAGRGLAREGVWRRLVWAHFWEWASTVCPAFSAP
HCSWAAHRPGRRRRRRRR
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mRNA from alignment at H-akashiwo_Contig1175:245918..247044+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1175.8.1 ID=mRNA_H-akashiwo_Contig1175.8.1|Name=mRNA_H-akashiwo_Contig1175.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1127bp|location=Sequence derived from alignment at H-akashiwo_Contig1175:245918..247044+ (Heterosigma akashiwo CCMP452)
CGCCGCGCCGCTGGGCTACGACAACAACCACCTGCCCGCCGCCACGCCCA
AGCAGGGCGAGGACTGGCGCGGGAAGGTGGggcGGGGCGCGcGCGCGGCT
TACAGTATACCTCCCAGCAGTCCTGGGGCTGCACAGCGCTCCCCACCGCA
TCTCGAATGGCACCATGTTGCCCCATTCCGTGCTTGGATGAGCTGGATCT
TCGTAACTATCTGGTGTCGCACTACAAGGTGGACGTGGTCTCCATCTGTC
ACCCACCCACCCACCCACCCTTGTTTCTGCATTTCCTCTCTCCTGTTGCG
CCCTCTGGGCAGGAGTCTGGCGGCGCCTGGTCTGGGCGCATTTTTGGGAA
TGGGCGAGCACAGTCTGCCCAGCATTCTCGGCCCCACACTGCTCATGGGC
TGCGCACAGGCCAGGTGAGGCGTGGCTTATTCTCAACCTTGTTTCATTGG
TTTGTTGTTTTGTTTATTCTAATATTTCATGATCTCAACTCAACCTATCC
CATATACTTTTAAGTAGCCAATCTGAGCAGTCGCTTGCATGAAGGAATAA
GCTCCTCAAAGGGTGGCCTGGCATTCCTTTCTCCTCCAGGACAACGGCCA
GGGCCAAGCAGTAGGACCTGGGCACGGTGGTGTGCTCATGTACAGCCAGC
AGGGCACGGCCACTGATGCCAGAGGAAGGGCCCAGAGTGCCGAGACTAGT
GGGTGGAAGCAGGTATCTTGGAACTTGAGCATAGTTTTTCCTTGCGCCAC
TTGCCTGAATTCGAGCACACCCAAGCCCCCAGAGTGCAGCGACAGTTTTC
TGCCTGAGTGCCAGCATGTCAGGCCTTGCATTGCAAAAGCTGTCCTGAAA
CTTCCGATAGTTTTCCGGTCACTTGCTCGGCACCCAGAGAGAAAACTGCC
TCAGTACCAAGGCTAAAACGCCATCTTGATTGACATATACACCAACCTTC
CACCGGGTGTTGCTCTGGCAAGTGGTGCGGAAAGCTATCTCGGGTTCCAG
GATTGACCTGTTTCCGCTTGTGGTCTGCGGTGCACCCCCCCCCTCCCCCT
TCCACCTCCCTGCTCATTCATTGCCTTCTTCTTCTGTATTCCCCTTCCCA
GGGCGGCGGCGGCGGCGGCGGCGGCGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1175:245918..247044+

>mRNA_H-akashiwo_Contig1175.8.1 ID=mRNA_H-akashiwo_Contig1175.8.1|Name=mRNA_H-akashiwo_Contig1175.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=204bp|location=Sequence derived from alignment at H-akashiwo_Contig1175:245918..247044+ (Heterosigma akashiwo CCMP452)
CGCCGCGCCGCTGGGCTACGACAACAACCACCTGCCCGCCGCCACGCCCA
AGCAGGGCGAGGACTGGCGCGGGAAGGAGTCTGGCGGCGCCTGGTCTGGG
CGCATTTTTGGGAATGGGCGAGCACAGTCTGCCCAGCATTCTCGGCCCCA
CACTGCTCATGGGCTGCGCACAGGCCAGGGCGGCGGCGGCGGCGGCGGCG
GCGG
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