mRNA_H-akashiwo_Contig1175.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1175.3.1
Unique NamemRNA_H-akashiwo_Contig1175.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig1175.3.1 vs. uniprot
Match: A0A7S3XVA0_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVA0_HETAK)

HSP 1 Score: 188 bits (477), Expect = 4.050e-55
Identity = 86/123 (69.92%), Postives = 105/123 (85.37%), Query Frame = 1 
Query:    1 SQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQET 369
            +Q+P+LGH+ +REG+KPDPKKIEAV+ +RRP SKKQVRQ LGLASYYRQFV  F+ IA PLY+LTKD PKGV W DDCEW++Q +KD L S P+L+YPR+D+PFIVETDAS  GLGA+L Q+T
Sbjct:  292 AQIPFLGHLASREGLKPDPKKIEAVRKLRRPESKKQVRQLLGLASYYRQFVPNFASIAAPLYKLTKDKPKGVLWDDDCEWAFQEIKDSLTSAPVLMYPRWDKPFIVETDASKTGLGAILLQQT 414
[Close]
BLAST of mRNA_H-akashiwo_Contig1175.3.1 vs. uniprot
Match: A0A7S3XU57_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU57_HETAK)

HSP 1 Score: 183 bits (464), Expect = 5.500e-55
Identity = 85/123 (69.11%), Postives = 102/123 (82.93%), Query Frame = 1 
Query:    1 SQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQET 369
            +QVP+LGHI TREG+KPDPKKIEA+K ++RP +KKQVRQ LGLASYYRQFV  F+  A PLY LTK  PKGVEWTDDCEW++Q LKD L + PILI+P F++ F +ETDAS  GLGA+LSQ+T
Sbjct:  154 AQVPFLGHIATREGLKPDPKKIEAIKKLQRPQTKKQVRQVLGLASYYRQFVPNFAATAAPLYTLTKKEPKGVEWTDDCEWAFQNLKDTLTTAPILIFPNFNKEFTIETDASKHGLGAILSQDT 276
[Close]
BLAST of mRNA_H-akashiwo_Contig1175.3.1 vs. uniprot
Match: A0A7S3XV63_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV63_HETAK)

HSP 1 Score: 188 bits (477), Expect = 8.010e-54
Identity = 86/123 (69.92%), Postives = 105/123 (85.37%), Query Frame = 1 
Query:    1 SQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQET 369
            +Q+P+LGH+ +REG+KPDPKKIEAV+ +RRP SKKQVRQ LGLASYYRQFV  F+ IA PLY+LTKD PKGV W DDCEW++Q +KD L S P+L+YPR+D+PFIVETDAS  GLGA+L Q+T
Sbjct:  292 AQIPFLGHLASREGLKPDPKKIEAVRKLRRPESKKQVRQLLGLASYYRQFVPNFASIAAPLYKLTKDKPKGVLWDDDCEWAFQEIKDSLTSAPVLMYPRWDKPFIVETDASKTGLGAILLQQT 414
[Close]
BLAST of mRNA_H-akashiwo_Contig1175.3.1 vs. uniprot
Match: A0A8M1HLT4_BETSP (uncharacterized mitochondrial protein AtMg00860-like n=1 Tax=Betta splendens TaxID=158456 RepID=A0A8M1HLT4_BETSP)

HSP 1 Score: 140 bits (353), Expect = 2.030e-39
Identity = 68/123 (55.28%), Postives = 91/123 (73.98%), Query Frame = 1 
Query:    4 QVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQETD 372
            +V +LGH+I+ +G+  DPKK+EAV G RRP    ++R FLG ASYYR+FVEGF+++A PL+++  +  +  +WT  CE S++ LK KLVS P+L Y  F RPFI+E DAS  GLGAVLSQETD
Sbjct:   26 EVGYLGHVISGQGVSTDPKKVEAVAGWRRPQQVSELRTFLGFASYYRRFVEGFAKLAGPLHRVVAELTES-KWTPQCEQSFEALKAKLVSAPVLAYADFGRPFILEIDASHDGLGAVLSQETD 147
[Close]
BLAST of mRNA_H-akashiwo_Contig1175.3.1 vs. uniprot
Match: A0A674PMZ3_TAKRU (Ribonuclease H n=1 Tax=Takifugu rubripes TaxID=31033 RepID=A0A674PMZ3_TAKRU)

HSP 1 Score: 146 bits (369), Expect = 2.440e-38
Identity = 75/134 (55.97%), Postives = 93/134 (69.40%), Query Frame = 1 
Query:    4 QVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPK-----------GVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQETD 372
            QV +LGHII+ +G+  DPKKIEAV G +RP    ++R FLG ASYYR+FV+GF+++AKPL+QL  D              G  WT +CE S+  LK +LVSTP+L Y  F RPFI+ETDAS  GLGAVLSQETD
Sbjct:  193 QVSYLGHIISSQGVSTDPKKIEAVAGWQRPRHISELRSFLGFASYYRRFVDGFAKMAKPLHQLVADLAGTKTKRGSGRALGSAWTPECEESFNALKSRLVSTPVLAYADFSRPFILETDASHSGLGAVLSQETD 326
[Close]
BLAST of mRNA_H-akashiwo_Contig1175.3.1 vs. uniprot
Match: A0A5C6N8P1_9TELE (Ribonuclease H n=1 Tax=Takifugu flavidus TaxID=433684 RepID=A0A5C6N8P1_9TELE)

HSP 1 Score: 146 bits (369), Expect = 2.460e-38
Identity = 75/134 (55.97%), Postives = 93/134 (69.40%), Query Frame = 1 
Query:    4 QVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPK-----------GVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQETD 372
            QV +LGHII+ +G+  DPKKIEAV G +RP    ++R FLG ASYYR+FV+GF+++AKPL+QL  D              G  WT +CE S+  LK +LVSTP+L Y  F RPFI+ETDAS  GLGAVLSQETD
Sbjct:  414 QVSYLGHIISSQGVSTDPKKIEAVAGWQRPRHISELRSFLGFASYYRRFVDGFAKMAKPLHQLVADLAGTKTKQGSGQALGSAWTPECEESFNALKSRLVSTPVLAYADFSRPFILETDASHSGLGAVLSQETD 547
[Close]
BLAST of mRNA_H-akashiwo_Contig1175.3.1 vs. uniprot
Match: A0A5C6N0M9_9TELE (Ribonuclease H n=1 Tax=Takifugu flavidus TaxID=433684 RepID=A0A5C6N0M9_9TELE)

HSP 1 Score: 145 bits (365), Expect = 6.990e-38
Identity = 74/134 (55.22%), Postives = 92/134 (68.66%), Query Frame = 1 
Query:    4 QVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPK-----------GVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQETD 372
            QV +LGHII+ +G+  DPKKIEAV G +RP    ++R FLG ASYYR+FV+GF+++AKPL+QL  D              G  WT +CE S+  LK +LVSTP+L Y  F RPFI+ETD S  GLGAVLSQETD
Sbjct:  381 QVSYLGHIISSQGVSTDPKKIEAVAGWQRPRHISELRSFLGFASYYRRFVDGFAKMAKPLHQLVADLAGTKTKRGSGRALGSAWTPECEESFNALKSRLVSTPVLAYADFSRPFILETDTSHSGLGAVLSQETD 514
[Close]
BLAST of mRNA_H-akashiwo_Contig1175.3.1 vs. uniprot
Match: A0A5C6NI97_9TELE (Ribonuclease H n=2 Tax=Takifugu flavidus TaxID=433684 RepID=A0A5C6NI97_9TELE)

HSP 1 Score: 143 bits (361), Expect = 3.000e-37
Identity = 74/134 (55.22%), Postives = 92/134 (68.66%), Query Frame = 1 
Query:    4 QVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPK-----------GVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQETD 372
            QV +LGHII+ +G+  DPKKIEAV G + P    ++R FLG ASYYR+FV+GF+++AKPL+QL  D              G  WT +CE S+  LK +LVSTP+L Y  F RPFI+ETDAS  GLGAVLSQETD
Sbjct:  941 QVSYLGHIISSQGVSTDPKKIEAVAGWQCPRHISELRSFLGFASYYRRFVDGFAKMAKPLHQLVADLAGTKTKRGSGRALGSAWTPECEESFNALKSRLVSTPVLAYADFSRPFILETDASHSGLGAVLSQETD 1074
[Close]
BLAST of mRNA_H-akashiwo_Contig1175.3.1 vs. uniprot
Match: A0A5C6NL01_9TELE (Retrovirus-related Pol polyprotein from transposon opus (Fragment) n=1 Tax=Takifugu flavidus TaxID=433684 RepID=A0A5C6NL01_9TELE)

HSP 1 Score: 141 bits (356), Expect = 1.390e-36
Identity = 73/133 (54.89%), Postives = 91/133 (68.42%), Query Frame = 1 
Query:    7 VPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPK-----------GVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQETD 372
            V +LGHII+ +G+  DPKKIEAV G + P    ++R FLG ASYYR+FV+GF+++AKPL+QL  D              G  WT +CE S+  LK +LVSTP+L Y  F RPFI+ETDAS  GLGAVLSQETD
Sbjct:  648 VSYLGHIISSQGVSTDPKKIEAVAGWQCPRHISELRSFLGFASYYRRFVDGFAKMAKPLHQLVADLAGTKTKRGSGRALGSAWTPECEESFNALKSRLVSTPVLAYADFSRPFILETDASHSGLGAVLSQETD 780
[Close]
BLAST of mRNA_H-akashiwo_Contig1175.3.1 vs. uniprot
Match: UPI0011C185D9 (uncharacterized protein LOC115589347 n=1 Tax=Sparus aurata TaxID=8175 RepID=UPI0011C185D9)

HSP 1 Score: 141 bits (355), Expect = 1.920e-36
Identity = 72/134 (53.73%), Postives = 90/134 (67.16%), Query Frame = 1 
Query:    4 QVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPK-----------GVEWTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQETD 372
            QV +LGH+I+ +G+  DPKK+EAV   +RP    ++R FLG ASYYR+FV+GF+++AKPL+QL  D              G  WT  CE S+  LK KLVS P+L Y  F RPFI+ETDAS  GLGAVLSQETD
Sbjct:  877 QVLYLGHVISSQGVSTDPKKVEAVANWQRPRHISELRSFLGFASYYRRFVDGFAKLAKPLHQLVADLAGTKSRKGSGQALGAAWTPLCEGSFNALKSKLVSAPVLAYADFSRPFILETDASHSGLGAVLSQETD 1010
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1175.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XVA0_HETAK4.050e-5569.92Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3XU57_HETAK5.500e-5569.11Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XV63_HETAK8.010e-5469.92Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A8M1HLT4_BETSP2.030e-3955.28uncharacterized mitochondrial protein AtMg00860-li... [more]
A0A674PMZ3_TAKRU2.440e-3855.97Ribonuclease H n=1 Tax=Takifugu rubripes TaxID=310... [more]
A0A5C6N8P1_9TELE2.460e-3855.97Ribonuclease H n=1 Tax=Takifugu flavidus TaxID=433... [more]
A0A5C6N0M9_9TELE6.990e-3855.22Ribonuclease H n=1 Tax=Takifugu flavidus TaxID=433... [more]
A0A5C6NI97_9TELE3.000e-3755.22Ribonuclease H n=2 Tax=Takifugu flavidus TaxID=433... [more]
A0A5C6NL01_9TELE1.390e-3654.89Retrovirus-related Pol polyprotein from transposon... [more]
UPI0011C185D91.920e-3653.73uncharacterized protein LOC115589347 n=1 Tax=Sparu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1175contigH-akashiwo_Contig1175:159697..160068 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog13735.ENSPSIP00000000353
PFAMsRVT_1,SCAN,rve,zf-CCHC,zf-H2C2
Model size372
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.45e-35
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria,48B0V@7711|Chordata,499U9@7742|Vertebrata,4CK8P@8459|Testudines
DescriptionK02A2.6-like
Cds size372
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387106.2668686-CDS-H-akashiwo_Contig1175:159696..1600681681387106.2668686-CDS-H-akashiwo_Contig1175:159696..160068Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1175 159697..160068 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1175.3.1prot_H-akashiwo_Contig1175.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1175 159697..160068 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1175.3.1

>prot_H-akashiwo_Contig1175.3.1 ID=prot_H-akashiwo_Contig1175.3.1|Name=mRNA_H-akashiwo_Contig1175.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=124bp
SQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQF
VEGFSEIAKPLYQLTKDTPKGVEWTDDCEWSWQTLKDKLVSTPILIYPRF
DRPFIVETDASGQGLGAVLSQETD
back to top

mRNA from alignment at H-akashiwo_Contig1175:159697..160068+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1175.3.1 ID=mRNA_H-akashiwo_Contig1175.3.1|Name=mRNA_H-akashiwo_Contig1175.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=372bp|location=Sequence derived from alignment at H-akashiwo_Contig1175:159697..160068+ (Heterosigma akashiwo CCMP452)
TCACAAGTACCATGGCTGGGACATATCATCACAAGAGAAGGGATAAAACC
TGACCCCAAGAAGATAGAAGCAGTGAAAGGAATGAGAAGACCTGCATCGA
AAAAACAAGTCAGGCAATTTCTAGGGTTGGCATCCTACTACAGACAGTTC
GTAGAGGGATTTTCAGAAATTGCAAAACCACTATACCAACTGACGAAGGA
TACACCAAAAGGGGTGGAATGGACCGACGACTGTGAATGGTCATGGCAGA
CACTAAAGGACAAACTAGTGTCAACACCAATACTGATATACCCAAGGTTC
GATAGACCCTTCATAGTGGAAACGGATGCATCAGGACAAGGATTGGGAGC
TGTATTATCACAAGAAACAGAT
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1175:159697..160068+

>mRNA_H-akashiwo_Contig1175.3.1 ID=mRNA_H-akashiwo_Contig1175.3.1|Name=mRNA_H-akashiwo_Contig1175.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=372bp|location=Sequence derived from alignment at H-akashiwo_Contig1175:159697..160068+ (Heterosigma akashiwo CCMP452)
TCACAAGTACCATGGCTGGGACATATCATCACAAGAGAAGGGATAAAACC
TGACCCCAAGAAGATAGAAGCAGTGAAAGGAATGAGAAGACCTGCATCGA
AAAAACAAGTCAGGCAATTTCTAGGGTTGGCATCCTACTACAGACAGTTC
GTAGAGGGATTTTCAGAAATTGCAAAACCACTATACCAACTGACGAAGGA
TACACCAAAAGGGGTGGAATGGACCGACGACTGTGAATGGTCATGGCAGA
CACTAAAGGACAAACTAGTGTCAACACCAATACTGATATACCCAAGGTTC
GATAGACCCTTCATAGTGGAAACGGATGCATCAGGACAAGGATTGGGAGC
TGTATTATCACAAGAAACAGAT
back to top