mRNA_H-akashiwo_Contig1174.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1174.2.1
Unique NamemRNA_H-akashiwo_Contig1174.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1174.2.1 vs. uniprot
Match: A0A7S3Y8R3_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8R3_HETAK)

HSP 1 Score: 491 bits (1265), Expect = 1.390e-166
Identity = 250/281 (88.97%), Postives = 254/281 (90.39%), Query Frame = 3
Query:   87 QGDVTQESGADNFGGGLKSGIEGACMP*RSC-GQMRARRLLCWWTPNAFNSLDRQAALWNCRILWSRASLFLFNTYRGYARIFVKGVAQPVLSREGTTQGDPLAMLMYAVGVLPLVRKLKERGFCTQTWYADDASAGGKVGPVREWLNALIQDGPMYGYYPEPSKSIVIVKDGKLEEARAAFAGLDMEFVEASRFLGGFLGKEDAVRHLLEEKVRKWVEAVEDLAEAAEVYPQDAYVCFIKSLQCEWGYVQRVVEGAAEAMDPLDKAIQDKFLPAVFGREM 926
            +GDVT+  G DN  GGLKSGIEG     R          ++     NAFNSLDRQAALWNCRILWSRAS FLFNTYRGYARIFVKGVAQPVLSREGTTQGDPLAMLMYAVGVLPLVRKLKERGFCTQTWYADDASAGGKVGPVREWLNALIQDGPMYGYYPEPSKSIVIVKDGKLEEARAAFAGLDMEFVEASRFLGGFLGKEDAVRHLLEEKVRKWVEAVEDLAEAAEVYPQDAYVCFIKSLQCEWGYVQRVVEGAAEAM PLDKAIQDKFLPAVFGREM
Sbjct:  395 KGDVTEVCGTDNLAGGLKSGIEGGVHAMRELWADDDTEVVVLVDASNAFNSLDRQAALWNCRILWSRASYFLFNTYRGYARIFVKGVAQPVLSREGTTQGDPLAMLMYAVGVLPLVRKLKERGFCTQTWYADDASAGGKVGPVREWLNALIQDGPMYGYYPEPSKSIVIVKDGKLEEARAAFAGLDMEFVEASRFLGGFLGKEDAVRHLLEEKVRKWVEAVEDLAEAAEVYPQDAYVCFIKSLQCEWGYVQRVVEGAAEAMGPLDKAIQDKFLPAVFGREM 675          
BLAST of mRNA_H-akashiwo_Contig1174.2.1 vs. uniprot
Match: A0A7S3Y918_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y918_HETAK)

HSP 1 Score: 474 bits (1219), Expect = 1.570e-165
Identity = 233/235 (99.15%), Postives = 233/235 (99.15%), Query Frame = 3
Query:  222 NAFNSLDRQAALWNCRILWSRASLFLFNTYRGYARIFVKGVAQPVLSREGTTQGDPLAMLMYAVGVLPLVRKLKERGFCTQTWYADDASAGGKVGPVREWLNALIQDGPMYGYYPEPSKSIVIVKDGKLEEARAAFAGLDMEFVEASRFLGGFLGKEDAVRHLLEEKVRKWVEAVEDLAEAAEVYPQDAYVCFIKSLQCEWGYVQRVVEGAAEAMDPLDKAIQDKFLPAVFGREM 926
            NAFNSLDRQAALWNCRILWSRAS FLFNTYRGYARIFVKGVAQPVLSREGTTQGDPLAMLMYAVGVLPLVRKLKERGFCTQTWYADDASAGGKVGPVREWLNALIQDGPMYGYYPEPSKSIVIVKDGKLEEARAAFAGLDMEFVEASRFLGGFLGKEDAVRHLLEEKVRKWVEAVEDLAEAAEVYPQDAYVCFIKSLQCEWGYVQRVVEGAAEAM PLDKAIQDKFLPAVFGREM
Sbjct:   20 NAFNSLDRQAALWNCRILWSRASYFLFNTYRGYARIFVKGVAQPVLSREGTTQGDPLAMLMYAVGVLPLVRKLKERGFCTQTWYADDASAGGKVGPVREWLNALIQDGPMYGYYPEPSKSIVIVKDGKLEEARAAFAGLDMEFVEASRFLGGFLGKEDAVRHLLEEKVRKWVEAVEDLAEAAEVYPQDAYVCFIKSLQCEWGYVQRVVEGAAEAMGPLDKAIQDKFLPAVFGREM 254          
BLAST of mRNA_H-akashiwo_Contig1174.2.1 vs. uniprot
Match: A0A7S4DEE9_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEE9_HETAK)

HSP 1 Score: 389 bits (999), Expect = 1.450e-128
Identity = 201/236 (85.17%), Postives = 206/236 (87.29%), Query Frame = 3
Query:   87 QGDVTQESGADNFGGGLKSGIEGACMP*RSC-GQMRARRLLCWWTPNAFNSLDRQAALWNCRILWSRASLFLFNTYRGYARIFVKGVAQPVLSREGTTQGDPLAMLMYAVGVLPLVRKLKERGFCTQTWYADDASAGGKVGPVREWLNALIQDGPMYGYYPEPSKSIVIVKDGKLEEARAAFAGLDMEFVEASRFLGGFLGKEDAVRHLLEEKVRKWVEAVEDLAEAAEVYPQDAY 791
            +GDVT+  G DN  GGLKSGIEG     R          ++     NAFNSLDRQAALWNCRILWSRAS FLFNTYRGYARIFVKGVAQPVLSREGTTQGDPLAMLMYAVGVLPLVRKLKERGFCTQTWYADDASAGGKVGPVREWLNALIQDGPMYGYYPEPSKSIVIVKDGKLEEARAAFAGLDMEFVEASRFLGGFLGKEDAVRHLLEEKVRKW+EAVEDLAE   VYP DAY
Sbjct:  395 KGDVTEVCGTDNLAGGLKSGIEGGVHAMRELWADDDTEVVVLVDASNAFNSLDRQAALWNCRILWSRASYFLFNTYRGYARIFVKGVAQPVLSREGTTQGDPLAMLMYAVGVLPLVRKLKERGFCTQTWYADDASAGGKVGPVREWLNALIQDGPMYGYYPEPSKSIVIVKDGKLEEARAAFAGLDMEFVEASRFLGGFLGKEDAVRHLLEEKVRKWMEAVEDLAEV--VYPPDAY 628          
BLAST of mRNA_H-akashiwo_Contig1174.2.1 vs. uniprot
Match: A0A7S3Y8U9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8U9_HETAK)

HSP 1 Score: 354 bits (908), Expect = 8.010e-121
Identity = 179/191 (93.72%), Postives = 181/191 (94.76%), Query Frame = 3
Query:  222 NAFNSLDRQAALWNCRILWSRASLFLFNTYRGYARIFVKGVAQPVLSREGTTQGDPLAMLMYAVGVLPLVRKLKERGFCTQTWYADDASAGGKVGPVREWLNALIQDGPMYGYYPEPSKSIVIVKDGKLEEARAAFAGLDMEFVEASRFLGGFLGKEDAVRH-LLEEKV--RKWVEAVEDLAEAAEVYPQD 785
            NAFNSLDRQAALWNCRILWSRAS FLFNTYRGYARIFVKGVAQPVLSREGTTQGDPLAMLMYAVGVLPLVRKLKERGFCTQTWYADDASAGGKVGPVREWLNALIQDGPMYGYYPEPSKSIVIVKDGKLEEARAAFAGLDMEFVEA RFLG FL KEDAVRH LLEEK   +KWVEAV+DL E AEVYPQD
Sbjct:   20 NAFNSLDRQAALWNCRILWSRASYFLFNTYRGYARIFVKGVAQPVLSREGTTQGDPLAMLMYAVGVLPLVRKLKERGFCTQTWYADDASAGGKVGPVREWLNALIQDGPMYGYYPEPSKSIVIVKDGKLEEARAAFAGLDMEFVEAWRFLGRFLEKEDAVRHYLLEEKKVKKKWVEAVKDLTETAEVYPQD 210          
BLAST of mRNA_H-akashiwo_Contig1174.2.1 vs. uniprot
Match: A0A0A9Y5Z9_LYGHE (Uncharacterized protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y5Z9_LYGHE)

HSP 1 Score: 255 bits (652), Expect = 3.210e-79
Identity = 133/279 (47.67%), Postives = 176/279 (63.08%), Query Frame = 3
Query:   93 DVTQESGADNFGGGLKSGIEGACMP*RSCGQMRARR-LLCWWTPNAFNSLDRQAALWNCRILWSRASLFLFNTYRGYARIFVKGVAQPVLSREGTTQGDPLAMLMYAVGVLPLVRKLKERGFCTQTWYADDASAGGKVGPVREWLNALIQDGPMYGYYPEPSKSIVIVKDGKLEEARAAFAGLDMEFVEASRFLGGFLGKEDAVRHLLEEKVRKWVEAVEDLAEAAEVYPQDAYVCFIKSLQCEWGYVQRVVEGAAEAMDPLDKAIQDKFLPAVFGREM 926
            D+ +E G++    G+KSGIEGA     S  +      LL     NAFN++ R  ALWN RI W R + FLFNTYRG+  +  +     +LS+EGTTQGDPL MLMYAVG LPL+R+LK   + TQ WYADD++  GK+   REW + L Q GP +GY+PEP KS ++VK G  EEA+A F  L+   V A RFLGG +G     +  ++EKV KWV  V+    AA+  PQ A+  F KSLQCEW +VQR ++G  E   PL  AI+ +F+PA+ G+E+
Sbjct:    8 DLKEECGSEQLSAGIKSGIEGAIHAIESLFEEDENECLLLVDASNAFNAMSRPLALWNARIYWPRCARFLFNTYRGFPVMIFRQSKAIILSQEGTTQGDPLGMLMYAVGTLPLIRRLKSDQY-TQNWYADDSACCGKLRHAREWFDLLRQHGPKWGYFPEPEKSFLVVKPGLKEEAKAIFQDLNAGIVRAKRFLGGMIGPASDKKSYVKEKVEKWVGYVKKFTLAAKKSPQAAHAAFTKSLQCEWAFVQRAIQGCEEEYLPLRDAIRSQFMPALMGQEI 285          
BLAST of mRNA_H-akashiwo_Contig1174.2.1 vs. uniprot
Match: A0A0A9XM84_LYGHE (Uncharacterized protein n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XM84_LYGHE)

HSP 1 Score: 261 bits (668), Expect = 2.170e-78
Identity = 135/280 (48.21%), Postives = 180/280 (64.29%), Query Frame = 3
Query:   90 GDVTQESGADNFGGGLKSGIEGACMP*-RSCGQMRARRLLCWWTPNAFNSLDRQAALWNCRILWSRASLFLFNTYRGYARIFVKGVAQPVLSREGTTQGDPLAMLMYAVGVLPLVRKLKERGFCTQTWYADDASAGGKVGPVREWLNALIQDGPMYGYYPEPSKSIVIVKDGKLEEARAAFAGLDMEFVEASRFLGGFLGKEDAVRHLLEEKVRKWVEAVEDLAEAAEVYPQDAYVCFIKSLQCEWGYVQRVVEGAAEAMDPLDKAIQDKFLPAVFGREM 926
            GD+ +E  A+    G KSG+EGA     R         +L     NAFNSL R  ALWN RILW R S FLFNTYRG+  +  +     ++S+EGTTQGDPL M MYAVG LPL+R+L+   +  Q WYADD++  G++  VREWL+ L ++GP +GYYPEP+KS +IVK G  E A   F  L+++ V++ R+LGG +G   A    +  KV +WVE VE LA+AA   PQ AY  ++KSLQ EWGYVQRV+    +  +PL K I++ F+PA+FGRE+
Sbjct:  402 GDLQEECAAEQLCAGTKSGVEGAVHGMTRLFEDPNCESILLMDASNAFNSLSRPLALWNARILWPRCSTFLFNTYRGFPMLVFRNSDAEIISQEGTTQGDPLGMYMYAVGTLPLIRQLRGDEW-RQVWYADDSACAGRLIAVREWLSRLQEEGPKWGYYPEPAKSYLIVKPGLEERAAEVFQDLNIQIVQSHRYLGGTIGPLSAQEEFVSGKVAEWVECVEKLAKAASTSPQAAYTAYVKSLQREWGYVQRVIGECQDQYEPLKKTIKETFVPALFGREV 680          
BLAST of mRNA_H-akashiwo_Contig1174.2.1 vs. uniprot
Match: A0A146L7G5_LYGHE (Uncharacterized protein n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A146L7G5_LYGHE)

HSP 1 Score: 261 bits (668), Expect = 1.780e-76
Identity = 135/280 (48.21%), Postives = 180/280 (64.29%), Query Frame = 3
Query:   90 GDVTQESGADNFGGGLKSGIEGACMP*-RSCGQMRARRLLCWWTPNAFNSLDRQAALWNCRILWSRASLFLFNTYRGYARIFVKGVAQPVLSREGTTQGDPLAMLMYAVGVLPLVRKLKERGFCTQTWYADDASAGGKVGPVREWLNALIQDGPMYGYYPEPSKSIVIVKDGKLEEARAAFAGLDMEFVEASRFLGGFLGKEDAVRHLLEEKVRKWVEAVEDLAEAAEVYPQDAYVCFIKSLQCEWGYVQRVVEGAAEAMDPLDKAIQDKFLPAVFGREM 926
            GD+ +E  A+    G KSG+EGA     R         +L     NAFNSL R  ALWN RILW R S FLFNTYRG+  +  +     ++S+EGTTQGDPL M MYAVG LPL+R+L+   +  Q WYADD++  G++  VREWL+ L ++GP +GYYPEP+KS +IVK G  E A   F  L+++ V++ R+LGG +G   A    +  KV +WVE VE LA+AA   PQ AY  ++KSLQ EWGYVQRV+    +  +PL K I++ F+PA+FGRE+
Sbjct:  402 GDLQEECAAEQLCAGTKSGVEGAVHGMTRLFEDPNCESILLMDASNAFNSLSRPLALWNARILWPRCSTFLFNTYRGFPMLVFRNSDAEIISQEGTTQGDPLGMYMYAVGTLPLIRQLRGDEW-RQVWYADDSACAGRLIAVREWLSRLQEEGPKWGYYPEPAKSYLIVKPGLEERAAEVFQDLNIQIVQSHRYLGGTIGPLSAQEEFVSGKVAEWVECVEKLAKAASTSPQAAYTAYVKSLQREWGYVQRVIGECQDQYEPLKKTIKETFVPALFGREV 680          
BLAST of mRNA_H-akashiwo_Contig1174.2.1 vs. uniprot
Match: A0A8D8RP38_9HEMI (Hypothetical protein n=3 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8RP38_9HEMI)

HSP 1 Score: 256 bits (654), Expect = 1.480e-74
Identity = 135/279 (48.39%), Postives = 175/279 (62.72%), Query Frame = 3
Query:   93 DVTQESGADNFGGGLKSGIEGACMP*RSC-GQMRARRLLCWWTPNAFNSLDRQAALWNCRILWSRASLFLFNTYRGYARIFVKGVAQPVLSREGTTQGDPLAMLMYAVGVLPLVRKLKERGFCTQTWYADDASAGGKVGPVREWLNALIQDGPMYGYYPEPSKSIVIVKDGKLEEARAAFAGLDMEFVEASRFLGGFLGKEDAVRHLLEEKVRKWVEAVEDLAEAAEVYPQDAYVCFIKSLQCEWGYVQRVVEGAAEAMDPLDKAIQDKFLPAVFGREM 926
            DV    G+     G K GIEGA         +     LL     NAFN + R   LWN RILW R S FLFNTY+GYA I  +   + +LS+EGTTQGDPLAMLMYAVGVLPL+ KLK R    Q WYADD+S  G +  ++EWL  L+++GP +GYYPEPSKS +I+KDG  +EA   F   +++ V + +FLG  +G +D + + +EEKV+ W   V+  AEAA+  PQ A+  FIKSLQ EW Y+QRVV+   E    L +AI+  F PA+ GRE+
Sbjct:  393 DVQYVCGSTQLSAGTKDGIEGAIHSISDLFDEEDDGALLLVDAQNAFNCISRPLTLWNARILWPRCSRFLFNTYQGYAVIKFRFCDEQILSKEGTTQGDPLAMLMYAVGVLPLINKLKSRERI-QNWYADDSSCFGNLQKIKEWLELLLEEGPKWGYYPEPSKSYLIIKDGMQQEAEQLFNMYNVKIVRSHKFLGSMIGSQDNIENFVEEKVKDWTNHVKKFAEAAKKSPQPAFAAFIKSLQFEWNYIQRVVDCPPEKYVSLKEAIRSHFTPAILGREI 670          
BLAST of mRNA_H-akashiwo_Contig1174.2.1 vs. uniprot
Match: A0A1S3DSW9_DIACI (uncharacterized protein LOC103524078 n=2 Tax=Diaphorina citri TaxID=121845 RepID=A0A1S3DSW9_DIACI)

HSP 1 Score: 246 bits (627), Expect = 1.660e-73
Identity = 128/279 (45.88%), Postives = 177/279 (63.44%), Query Frame = 3
Query:   93 DVTQESGADNFGGGLKSGIEGACMP*RSC-GQMRARRLLCWWTPNAFNSLDRQAALWNCRILWSRASLFLFNTYRGYARIFVKGVAQPVLSREGTTQGDPLAMLMYAVGVLPLVRKLKERGFCTQTWYADDASAGGKVGPVREWLNALIQDGPMYGYYPEPSKSIVIVKDGKLEEARAAFAGLDMEFVEASRFLGGFLGKEDAVRHLLEEKVRKWVEAVEDLAEAAEVYPQDAYVCFIKSLQCEWGYVQRVVEGAAEAMDPLDKAIQDKFLPAVFGREM 926
            DV +E  AD    G+K+GIEGA     S   +     LL     NAFN L R  ALWN RILW R + FLFN Y+GY+ I  +   + +LS+EGT+QGDPL+ML+YAVG+LPL+RKLK   + TQ WYADD+   GK+  +R W ++L+ +GP+YGY+PEP+KSI+IVK     +A   F  L+++   + RFLG  +G ++  +  ++EKV KW+  V  LA AA+  PQ A     KSLQ EW ++QRVV+G  +   PL   +   FLP++FGRE+
Sbjct:    8 DVQEECCADQLCAGIKNGIEGAIHGISSIFHEEDTDGLLLVDAKNAFNILSRPVALWNARILWPRCARFLFNAYQGYSFIVFRNSNERILSQEGTSQGDPLSMLLYAVGILPLIRKLKSDHY-TQNWYADDSCCMGKLLEIRTWFDSLMSEGPLYGYHPEPAKSIIIVKPELKSQAELLFQDLNVKIELSHRFLGSVIGPDEMKKEFIKEKVSKWITCVRHLANAAKQDPQSALTVLTKSLQFEWSFIQRVVDGCNDEYMPLKDVLHSCFLPSLFGREI 285          
BLAST of mRNA_H-akashiwo_Contig1174.2.1 vs. uniprot
Match: A0A8D9EK47_9HEMI (Hypothetical protein n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9EK47_9HEMI)

HSP 1 Score: 249 bits (635), Expect = 3.040e-73
Identity = 127/280 (45.36%), Postives = 173/280 (61.79%), Query Frame = 3
Query:   93 DVTQESGADNFGGGLKSGIEGACMP*RSCGQMR--ARRLLCWWTPNAFNSLDRQAALWNCRILWSRASLFLFNTYRGYARIFVKGVAQPVLSREGTTQGDPLAMLMYAVGVLPLVRKLKERGFCTQTWYADDASAGGKVGPVREWLNALIQDGPMYGYYPEPSKSIVIVKDGKLEEARAAFAGLDMEFVEASRFLGGFLGKEDAVRHLLEEKVRKWVEAVEDLAEAAEVYPQDAYVCFIKSLQCEWGYVQRVVEGAAEAMDPLDKAIQDKFLPAVFGREM 926
            D+ Q  G+D    G+KSGIEGA      C         LL     NAFNSL+R  ALW+ RI W R + FLFN+YRGYA + VK     +LSREGT QGDPLAM MYA G+LPL+R  K+    TQ WYADD++  GK+  +  WL  LI++GP +GY+PEPSKSI++VK+   +EA   +  L ++ V + RFLG  +GKE+  +  ++ K+ +WVE V  L+ A E  PQ  +  F KSLQ EW Y+QRV++   +   PL + I++   P + GRE+
Sbjct:  454 DIQQVCGSDQLCTGMKSGIEGAVHAMTRCFNEGDDGEGLLLIDATNAFNSLNRILALWHVRIFWPRCARFLFNSYRGYATVIVKDCPSFILSREGTCQGDPLAMYMYAAGILPLIRLCKDPEKYTQNWYADDSACFGKLSQIEVWLTTLIREGPKFGYFPEPSKSILVVKEINRQEAERDYGHLGLKVVTSHRFLGSVIGKEEDTKEYVKSKIDEWVECVRKLSRAGEKNPQGVHAAFTKSLQQEWAYIQRVLKNDDDGFLPLKEVIRNHLSPVILGREI 733          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1174.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y8R3_HETAK1.390e-16688.97Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A7S3Y918_HETAK1.570e-16599.15Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DEE9_HETAK1.450e-12885.17Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y8U9_HETAK8.010e-12193.72Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0A9Y5Z9_LYGHE3.210e-7947.67Uncharacterized protein (Fragment) n=1 Tax=Lygus h... [more]
A0A0A9XM84_LYGHE2.170e-7848.21Uncharacterized protein n=1 Tax=Lygus hesperus Tax... [more]
A0A146L7G5_LYGHE1.780e-7648.21Uncharacterized protein n=2 Tax=Lygus hesperus Tax... [more]
A0A8D8RP38_9HEMI1.480e-7448.39Hypothetical protein n=3 Tax=Cacopsylla melanoneur... [more]
A0A1S3DSW9_DIACI1.660e-7345.88uncharacterized protein LOC103524078 n=2 Tax=Diaph... [more]
A0A8D9EK47_9HEMI3.040e-7345.36Hypothetical protein n=1 Tax=Cacopsylla melanoneur... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1174contigH-akashiwo_Contig1174:140915..141840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog400682.PAC_15703028
PFAMsRVT_1
Model size928
Max annot lvl33208|Metazoa
Hectar predicted targeting categorymitochondrion
Exons1
Evalue2.03e-63
EggNOG OGs2E24P@1|root,2S9D9@2759|Eukaryota,3A6X8@33154|Opisthokonta,3BYHR@33208|Metazoa
Cds size741
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387106.1270347-UTR-H-akashiwo_Contig1174:140914..1410991681387106.1270347-UTR-H-akashiwo_Contig1174:140914..141099Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1174 140915..141099 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387106.1384804-CDS-H-akashiwo_Contig1174:141099..1418401681387106.1384804-CDS-H-akashiwo_Contig1174:141099..141840Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1174 141100..141840 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1174.2.1prot_H-akashiwo_Contig1174.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1174 141100..141840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1174.2.1

>prot_H-akashiwo_Contig1174.2.1 ID=prot_H-akashiwo_Contig1174.2.1|Name=mRNA_H-akashiwo_Contig1174.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=247bp
MRARRLLCWWTPNAFNSLDRQAALWNCRILWSRASLFLFNTYRGYARIFV
KGVAQPVLSREGTTQGDPLAMLMYAVGVLPLVRKLKERGFCTQTWYADDA
SAGGKVGPVREWLNALIQDGPMYGYYPEPSKSIVIVKDGKLEEARAAFAG
LDMEFVEASRFLGGFLGKEDAVRHLLEEKVRKWVEAVEDLAEAAEVYPQD
AYVCFIKSLQCEWGYVQRVVEGAAEAMDPLDKAIQDKFLPAVFGREM
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mRNA from alignment at H-akashiwo_Contig1174:140915..141840+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1174.2.1 ID=mRNA_H-akashiwo_Contig1174.2.1|Name=mRNA_H-akashiwo_Contig1174.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=926bp|location=Sequence derived from alignment at H-akashiwo_Contig1174:140915..141840+ (Heterosigma akashiwo CCMP452)
ATGCTTGACAAGAAGCCTGGGCTTAGACCCATTGGGGTTGGGGAGGTCTT GCAGAGGATCTTGGCTAAGTCGGTGGCATGGGTAACCAAGGGGATGTGAC TCAGGAGAGCGGGGCGGACAATTTTGGCGGGGGGCTGAAGTCGGGGATTG AGGGGGCGTGCATGCCATGAAGGAGTTGTGGGCAGATGAGGGCACGGAGG TTGTTGTGCTGGTGGACGCCCAATGCTTTCAACTCTTTGGACCGACAGGC GGCTCTTTGGAATTGCCGGATTTTGTGGTCTCGTGCCTCACTTTTCCTCT TCAACACATATCGGGGCTATGCGCGCATCTTTGTGAAGGGGGTTGCGCAG CCAGTTCTCAGCAGGGAGGGGACTACCCAAGGGGACCCGCTGGCGATGCT GATGTATGCGGTGGGTGTGCTGCCTCTGGTGCGCAAGCTGAAGGAGCGTG GCTTCTGTACCCAGACCTGGTATGCTGATGATGCTTCGGCTGGTGGGAAG GTGGGTCCGGTGAGGGAGTGGTTGAATGCCCTCATACAGGATGGCCCTAT GTATGGCTATTATCCCGAGCCTTCGAAGAGCATTGTGATTGTGAAGGATG GAAAGCTGGAAGAGGCACGGGCGGCGTTCGCGGGGCTGGACATGGAGTTT GTGGAGGCCTCGAGGTTTCTTGGGGGGTTTCTGGGGAAGGAGGATGCAGT CCGCCACTTGCTGGAAGAGAAGGTGAGGAAGTGGGTGGAGGCAGTCGAGG ATCTCGCGGAAGCTGCTGAGGTGTACCCCCAAGATGCGTATGTGTGCTTC ATCAAGTCACTGCAGTGTGAGTGGGGGTATGTCCAGAGGGTGGTGGAGGG TGCTGCTGAGGCGATGGACCCTTTGGATAAGGCCATACAGGACAAGTTCT TGCCGGCAGTCTTCGGGCGCGAGATG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1174:140915..141840+

>mRNA_H-akashiwo_Contig1174.2.1 ID=mRNA_H-akashiwo_Contig1174.2.1|Name=mRNA_H-akashiwo_Contig1174.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=741bp|location=Sequence derived from alignment at H-akashiwo_Contig1174:140915..141840+ (Heterosigma akashiwo CCMP452)
ATGAGGGCACGGAGGTTGTTGTGCTGGTGGACGCCCAATGCTTTCAACTC
TTTGGACCGACAGGCGGCTCTTTGGAATTGCCGGATTTTGTGGTCTCGTG
CCTCACTTTTCCTCTTCAACACATATCGGGGCTATGCGCGCATCTTTGTG
AAGGGGGTTGCGCAGCCAGTTCTCAGCAGGGAGGGGACTACCCAAGGGGA
CCCGCTGGCGATGCTGATGTATGCGGTGGGTGTGCTGCCTCTGGTGCGCA
AGCTGAAGGAGCGTGGCTTCTGTACCCAGACCTGGTATGCTGATGATGCT
TCGGCTGGTGGGAAGGTGGGTCCGGTGAGGGAGTGGTTGAATGCCCTCAT
ACAGGATGGCCCTATGTATGGCTATTATCCCGAGCCTTCGAAGAGCATTG
TGATTGTGAAGGATGGAAAGCTGGAAGAGGCACGGGCGGCGTTCGCGGGG
CTGGACATGGAGTTTGTGGAGGCCTCGAGGTTTCTTGGGGGGTTTCTGGG
GAAGGAGGATGCAGTCCGCCACTTGCTGGAAGAGAAGGTGAGGAAGTGGG
TGGAGGCAGTCGAGGATCTCGCGGAAGCTGCTGAGGTGTACCCCCAAGAT
GCGTATGTGTGCTTCATCAAGTCACTGCAGTGTGAGTGGGGGTATGTCCA
GAGGGTGGTGGAGGGTGCTGCTGAGGCGATGGACCCTTTGGATAAGGCCA
TACAGGACAAGTTCTTGCCGGCAGTCTTCGGGCGCGAGATG
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