mRNA_H-akashiwo_Contig1172.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1172.9.1
Unique NamemRNA_H-akashiwo_Contig1172.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1172.9.1 vs. uniprot
Match: A0A7S4DEE9_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEE9_HETAK)

HSP 1 Score: 255 bits (652), Expect = 1.240e-79
Identity = 126/127 (99.21%), Postives = 126/127 (99.21%), Query Frame = 1
Query:    1 MSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVTKGDVTEVCGTDNLAGGLKSGIEGGVHAMRELWADDDTEVVVLVDASNAFNSLDRQAALWNCRILWSRASYFLFNTYRA 381
            MSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVTKGDVTEVCGTDNLAGGLKSGIEGGVHAMRELWADDDTEVVVLVDASNAFNSLDRQAALWNCRILWSRASYFLFNTYR 
Sbjct:  346 MSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVTKGDVTEVCGTDNLAGGLKSGIEGGVHAMRELWADDDTEVVVLVDASNAFNSLDRQAALWNCRILWSRASYFLFNTYRG 472          
BLAST of mRNA_H-akashiwo_Contig1172.9.1 vs. uniprot
Match: A0A7S3Y8R3_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8R3_HETAK)

HSP 1 Score: 255 bits (652), Expect = 2.590e-78
Identity = 126/127 (99.21%), Postives = 126/127 (99.21%), Query Frame = 1
Query:    1 MSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVTKGDVTEVCGTDNLAGGLKSGIEGGVHAMRELWADDDTEVVVLVDASNAFNSLDRQAALWNCRILWSRASYFLFNTYRA 381
            MSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVTKGDVTEVCGTDNLAGGLKSGIEGGVHAMRELWADDDTEVVVLVDASNAFNSLDRQAALWNCRILWSRASYFLFNTYR 
Sbjct:  346 MSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVTKGDVTEVCGTDNLAGGLKSGIEGGVHAMRELWADDDTEVVVLVDASNAFNSLDRQAALWNCRILWSRASYFLFNTYRG 472          
BLAST of mRNA_H-akashiwo_Contig1172.9.1 vs. uniprot
Match: A0A7S3Y2Y7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2Y7_HETAK)

HSP 1 Score: 228 bits (580), Expect = 2.500e-74
Identity = 110/127 (86.61%), Postives = 117/127 (92.13%), Query Frame = 1
Query:    1 MSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVTKGDVTEVCGTDNLAGGLKSGIEGGVHAMRELWADDDTEVVVLVDASNAFNSLDRQAALWNCRILWSRASYFLFNTYRA 381
            MSNEV+EWSD+SALL RRG+MLDKKPGLRPIG+GEVLQRILAK VAWVTKGDVT+  G DNLAGGLKSGIEGGVHAM+ELWAD   EV+VLVDASNAFNSLDRQAALWNCRILWSRAS FLFNTYR 
Sbjct:   19 MSNEVMEWSDISALLARRGLMLDKKPGLRPIGVGEVLQRILAKLVAWVTKGDVTQESGADNLAGGLKSGIEGGVHAMKELWADGGPEVIVLVDASNAFNSLDRQAALWNCRILWSRASLFLFNTYRG 145          
BLAST of mRNA_H-akashiwo_Contig1172.9.1 vs. uniprot
Match: A0A6H5GA13_9HEMI (Uncharacterized protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GA13_9HEMI)

HSP 1 Score: 161 bits (408), Expect = 3.730e-45
Identity = 74/129 (57.36%), Postives = 94/129 (72.87%), Query Frame = 1
Query:    1 MSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVTKGDVTEVCGTDNLAGGLKSGIEGGVHAMRELWADDDTEVVVLVDASNAFNSLDRQAALWNCRILWSRASYFLFNTYRATP 387
            M+N  ++W+ + ALL RR + LDK PG+RPIG+ EVLQRI AKA+AW T  D+ E CG+D L+ GLKSGIEG +HAM  ++ +D TE ++LVDA NAFN L R  ALWN RI W R + FLFN+YR  P
Sbjct:  159 MANNNVDWNRIKALLARRAVALDKCPGVRPIGVSEVLQRICAKAMAWTTGDDLKEACGSDQLSAGLKSGIEGAIHAMSAIFEEDQTECILLVDARNAFNQLSRPLALWNARIFWPRCARFLFNSYRGYP 287          
BLAST of mRNA_H-akashiwo_Contig1172.9.1 vs. uniprot
Match: A0A0A9XG89_LYGHE (Mediator of RNA polymerase II transcription subunit 13 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XG89_LYGHE)

HSP 1 Score: 157 bits (396), Expect = 3.870e-45
Identity = 73/129 (56.59%), Postives = 98/129 (75.97%), Query Frame = 1
Query:    1 MSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVTKGDVTEVCGTDNLAGGLKSGIEGGVHAMRELWADDDTEVVVLVDASNAFNSLDRQAALWNCRILWSRASYFLFNTYRATP 387
            ++N V+EWS + ALL RRG+ LDK PG+RPIG+GE+LQRI AK +A +T  D+ EVCG+D L+ G+KSGIEG VHA+  ++ + + E ++LVDA+NAFN++ R  ALWN RI W R + FLFNTYR  P
Sbjct:   81 LANGVIEWSRIKALLARRGVALDKCPGVRPIGVGELLQRICAKTMALITGEDLKEVCGSDQLSAGIKSGIEGAVHAISNMFNEAEHEGLLLVDATNAFNTMSRPLALWNSRIYWPRCARFLFNTYRGYP 209          
BLAST of mRNA_H-akashiwo_Contig1172.9.1 vs. uniprot
Match: A0A6H5HCT1_9HEMI (Uncharacterized protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5HCT1_9HEMI)

HSP 1 Score: 166 bits (420), Expect = 4.630e-45
Identity = 74/129 (57.36%), Postives = 101/129 (78.29%), Query Frame = 1
Query:    1 MSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVTKGDVTEVCGTDNLAGGLKSGIEGGVHAMRELWADDDTEVVVLVDASNAFNSLDRQAALWNCRILWSRASYFLFNTYRATP 387
            M+N +++W+ + A+L RRG+ LDK PG+RPIG+GE+LQRILAK +A +T  D+ E CG+D LA G KSGIEG +HAM E++A++D E ++LVDA+NAFN++ R  A+WN RILW R + FLFNTYR  P
Sbjct:  371 MANGIVDWNQIRAILARRGVALDKCPGVRPIGVGEMLQRILAKTMALLTAEDLKEACGSDQLAAGTKSGIEGAIHAMEEIFAEEDQECLLLVDAANAFNTMSRPLAIWNARILWPRCAKFLFNTYRGFP 499          
BLAST of mRNA_H-akashiwo_Contig1172.9.1 vs. uniprot
Match: A0A0A9XM84_LYGHE (Uncharacterized protein n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XM84_LYGHE)

HSP 1 Score: 162 bits (410), Expect = 4.780e-44
Identity = 77/129 (59.69%), Postives = 94/129 (72.87%), Query Frame = 1
Query:    1 MSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVTKGDVTEVCGTDNLAGGLKSGIEGGVHAMRELWADDDTEVVVLVDASNAFNSLDRQAALWNCRILWSRASYFLFNTYRATP 387
            ++N V+EWS + ALL RR + LDK+PG+RPIG+GEVLQRI AK +A VT GD+ E C  + L  G KSG+EG VH M  L+ D + E ++L+DASNAFNSL R  ALWN RILW R S FLFNTYR  P
Sbjct:  352 LANGVVEWSTIRALLARRAVALDKQPGIRPIGVGEVLQRICAKTMAMVTGGDLQEECAAEQLCAGTKSGVEGAVHGMTRLFEDPNCESILLMDASNAFNSLSRPLALWNARILWPRCSTFLFNTYRGFP 480          
BLAST of mRNA_H-akashiwo_Contig1172.9.1 vs. uniprot
Match: A0A146L7G5_LYGHE (Uncharacterized protein n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A146L7G5_LYGHE)

HSP 1 Score: 162 bits (410), Expect = 1.030e-43
Identity = 77/129 (59.69%), Postives = 94/129 (72.87%), Query Frame = 1
Query:    1 MSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVTKGDVTEVCGTDNLAGGLKSGIEGGVHAMRELWADDDTEVVVLVDASNAFNSLDRQAALWNCRILWSRASYFLFNTYRATP 387
            ++N V+EWS + ALL RR + LDK+PG+RPIG+GEVLQRI AK +A VT GD+ E C  + L  G KSG+EG VH M  L+ D + E ++L+DASNAFNSL R  ALWN RILW R S FLFNTYR  P
Sbjct:  352 LANGVVEWSTIRALLARRAVALDKQPGIRPIGVGEVLQRICAKTMAMVTGGDLQEECAAEQLCAGTKSGVEGAVHGMTRLFEDPNCESILLMDASNAFNSLSRPLALWNARILWPRCSTFLFNTYRGFP 480          
BLAST of mRNA_H-akashiwo_Contig1172.9.1 vs. uniprot
Match: A0A6H5FVY7_9HEMI (Reverse transcriptase domain-containing protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5FVY7_9HEMI)

HSP 1 Score: 159 bits (401), Expect = 1.610e-42
Identity = 70/129 (54.26%), Postives = 97/129 (75.19%), Query Frame = 1
Query:    1 MSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVTKGDVTEVCGTDNLAGGLKSGIEGGVHAMRELWADDDTEVVVLVDASNAFNSLDRQAALWNCRILWSRASYFLFNTYRATP 387
            ++N ++EW  + ALL RRG+ +DKKPG+RPIG+GEVLQR+ +K +A +T  D+ E CG+D L  G KSGIEG +HA  +L+ D++ E ++L+DA+NAFN++ R  A+WN RILW R S FLFNTYR  P
Sbjct:  259 LANSIVEWDKIKALLARRGVAIDKKPGIRPIGVGEVLQRLCSKTMAIITGIDLKEECGSDQLCAGAKSGIEGAIHASSKLFEDEEVEGMLLIDATNAFNTISRPLAIWNSRILWPRCSRFLFNTYRGHP 387          
BLAST of mRNA_H-akashiwo_Contig1172.9.1 vs. uniprot
Match: A0A146L2U3_LYGHE (Uncharacterized protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A146L2U3_LYGHE)

HSP 1 Score: 156 bits (395), Expect = 8.900e-42
Identity = 72/129 (55.81%), Postives = 92/129 (71.32%), Query Frame = 1
Query:    1 MSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVTKGDVTEVCGTDNLAGGLKSGIEGGVHAMRELWADDDTEVVVLVDASNAFNSLDRQAALWNCRILWSRASYFLFNTYRATP 387
            MSN ++EW  + ALL RRG+ LDK PG+RPIG+GEVLQRI AK + +VT  D+ E CG D L  G K+G+E  +H M   +AD +TE ++L+DA+NAFNSL R   LWN R+LW R + FLFNTYR  P
Sbjct:  313 MSNGIMEWDKIKALLARRGVALDKNPGVRPIGVGEVLQRICAKTMVFVTGIDLKEECGADQLCAGTKAGVESAIHGMSMRFADTETEGMLLIDATNAFNSLSRPLTLWNARMLWPRCARFLFNTYRGFP 441          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1172.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DEE9_HETAK1.240e-7999.21Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y8R3_HETAK2.590e-7899.21Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A7S3Y2Y7_HETAK2.500e-7486.61Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6H5GA13_9HEMI3.730e-4557.36Uncharacterized protein n=1 Tax=Nesidiocoris tenui... [more]
A0A0A9XG89_LYGHE3.870e-4556.59Mediator of RNA polymerase II transcription subuni... [more]
A0A6H5HCT1_9HEMI4.630e-4557.36Uncharacterized protein n=1 Tax=Nesidiocoris tenui... [more]
A0A0A9XM84_LYGHE4.780e-4459.69Uncharacterized protein n=1 Tax=Lygus hesperus Tax... [more]
A0A146L7G5_LYGHE1.030e-4359.69Uncharacterized protein n=2 Tax=Lygus hesperus Tax... [more]
A0A6H5FVY7_9HEMI1.610e-4254.26Reverse transcriptase domain-containing protein n=... [more]
A0A146L2U3_LYGHE8.900e-4255.81Uncharacterized protein (Fragment) n=1 Tax=Lygus h... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1172contigH-akashiwo_Contig1172:309256..309654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog400682.PAC_15703028
PFAMsRVT_1
Model size399
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.18e-41
EggNOG OGs2E24P@1|root,2S9D9@2759|Eukaryota,3A6X8@33154|Opisthokonta,3BYHR@33208|Metazoa
Cds size399
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387105.8693428-CDS-H-akashiwo_Contig1172:309255..3096541681387105.8693428-CDS-H-akashiwo_Contig1172:309255..309654Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1172 309256..309654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1172.9.1prot_H-akashiwo_Contig1172.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1172 309256..309654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1172.9.1

>prot_H-akashiwo_Contig1172.9.1 ID=prot_H-akashiwo_Contig1172.9.1|Name=mRNA_H-akashiwo_Contig1172.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=133bp
MSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVTK
GDVTEVCGTDNLAGGLKSGIEGGVHAMRELWADDDTEVVVLVDASNAFNS
LDRQAALWNCRILWSRASYFLFNTYRATPHFL*
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mRNA from alignment at H-akashiwo_Contig1172:309256..309654-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1172.9.1 ID=mRNA_H-akashiwo_Contig1172.9.1|Name=mRNA_H-akashiwo_Contig1172.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=399bp|location=Sequence derived from alignment at H-akashiwo_Contig1172:309256..309654- (Heterosigma akashiwo CCMP452)
ATGTCAAACGAGGTCCTAGAGTGGAGTGATCTGTCGGCGCTATTGGTTCG TAGAGGCATCATGCTGGATAAGAAGCCAGGGCTTAGGCCTATTGGGATTG GGGAGGTGTTGCAGAGGATCCTGGCCAAGGCGGTGGCGTGGGTTACTAAG GGGGATGTGACGGAGGTCTGTGGGACTGACAACCTGGCCGGGGGGCTGAA GTCTGGGATTGAGGGGGGTGTGCATGCCATGAGGGAGTTGTGGGCAGACG ATGACACCGAGGTGGTTGTGCTGGTGGATGCCTCTAATGCCTTCAACTCT TTGGATCGCCAGGCTGCTCTCTGGAACTGTAGGATTTTGTGGTCTAGGGC TTCCTATTTCCTCTTCAACACTTACCGGGCTACGCCGCATTTTTTGTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1172:309256..309654-

>mRNA_H-akashiwo_Contig1172.9.1 ID=mRNA_H-akashiwo_Contig1172.9.1|Name=mRNA_H-akashiwo_Contig1172.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=399bp|location=Sequence derived from alignment at H-akashiwo_Contig1172:309256..309654- (Heterosigma akashiwo CCMP452)
ATGTCAAACGAGGTCCTAGAGTGGAGTGATCTGTCGGCGCTATTGGTTCG
TAGAGGCATCATGCTGGATAAGAAGCCAGGGCTTAGGCCTATTGGGATTG
GGGAGGTGTTGCAGAGGATCCTGGCCAAGGCGGTGGCGTGGGTTACTAAG
GGGGATGTGACGGAGGTCTGTGGGACTGACAACCTGGCCGGGGGGCTGAA
GTCTGGGATTGAGGGGGGTGTGCATGCCATGAGGGAGTTGTGGGCAGACG
ATGACACCGAGGTGGTTGTGCTGGTGGATGCCTCTAATGCCTTCAACTCT
TTGGATCGCCAGGCTGCTCTCTGGAACTGTAGGATTTTGTGGTCTAGGGC
TTCCTATTTCCTCTTCAACACTTACCGGGCTACGCCGCATTTTTTGTGA
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