mRNA_H-akashiwo_Contig1166.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1166.5.1
Unique NamemRNA_H-akashiwo_Contig1166.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1166.5.1 vs. uniprot
Match: A0A7S3Y8Z6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8Z6_HETAK)

HSP 1 Score: 247 bits (630), Expect = 9.890e-76
Identity = 126/171 (73.68%), Postives = 144/171 (84.21%), Query Frame = 1
Query:    1 LDESKSVGPDEVSPCVLKHCAKELDGPLARLFQKVERAADFPDSWKVARVTPVYKKGDATNPKNYRPVSVLPTLATTFERVLMPQLSSFLYEHIPPEQFGFLRGTGTVDVGVIIADQIVRSLEVRKDVRLVALDFKGAFGKVLRREVLEHLGAVGVRGRAFKLFKSYLSGR 513
            LD +KSVGPD VSP VLK CA +L  PL RLFQK+ +AA+FP SWKVARVTPVYKK DA+ PKNYRP+SVLPTLATTFERVLMPQL+SFL EHIP  QFGFL  TGT+DVGVI+ADQI R+LE RKDVRLVALDF+GAF KV  R +L HL AVGVR +A++LF+SYL G+
Sbjct:  323 LDVNKSVGPDGVSPRVLKDCAGQLVAPLTRLFQKIGKAAEFPTSWKVARVTPVYKKEDASLPKNYRPISVLPTLATTFERVLMPQLASFLIEHIPSNQFGFLPDTGTLDVGVILADQISRALEARKDVRLVALDFQGAFDKVWWRGLLAHLWAVGVRSKAYQLFESYLVGQ 493          
BLAST of mRNA_H-akashiwo_Contig1166.5.1 vs. uniprot
Match: A0A7S3Y8N4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8N4_HETAK)

HSP 1 Score: 246 bits (627), Expect = 6.940e-74
Identity = 126/171 (73.68%), Postives = 143/171 (83.63%), Query Frame = 1
Query:    1 LDESKSVGPDEVSPCVLKHCAKELDGPLARLFQKVERAADFPDSWKVARVTPVYKKGDATNPKNYRPVSVLPTLATTFERVLMPQLSSFLYEHIPPEQFGFLRGTGTVDVGVIIADQIVRSLEVRKDVRLVALDFKGAFGKVLRREVLEHLGAVGVRGRAFKLFKSYLSGR 513
            LD +KSVGPD VSP VLK CA +L  PL RLFQK+ +AA+FP SWKVARVTPV+KK DA  PKNYRP+SVLPTLATTFERVLMPQL+SFL EHIP  QFGFL  TGT+DVGVI+ADQI R+LE RKDVRLVALDF+GAF KV  R +L HL AVGVR +A++LF+SYLS R
Sbjct:  323 LDVNKSVGPDGVSPRVLKDCAGQLVAPLTRLFQKIGKAAEFPTSWKVARVTPVHKKEDANLPKNYRPISVLPTLATTFERVLMPQLASFLIEHIPSNQFGFLPDTGTLDVGVILADQISRALEARKDVRLVALDFQGAFDKVWWRGLLAHLWAVGVRSKAYQLFESYLSDR 493          
BLAST of mRNA_H-akashiwo_Contig1166.5.1 vs. uniprot
Match: A0A0P4VX79_SCYOL (Uncharacterized protein n=1 Tax=Scylla olivacea TaxID=85551 RepID=A0A0P4VX79_SCYOL)

HSP 1 Score: 128 bits (322), Expect = 3.580e-31
Identity = 68/173 (39.31%), Postives = 98/173 (56.65%), Query Frame = 1
Query:    1 LDESKSVGPDEVSPCVLKHCAKELDGPLARLFQKVERAADFPDSWKVARVTPVYKKGDATNPKNYRPVSVLPTLATTFERVLMPQLSSFLYEH--IPPEQFGFLRGTGTVDVGVIIADQIVRSLEVRKDVRLVALDFKGAFGKVLRREVLEHLGAVGVRGRAFKLFKSYLSGR 513
            +D  K+ GPD+VSP +LKHCA+EL  PL  +F    R   +P  WK ARV PV+KK   + P NYRP+S+L  +    E+++   +   L E+  +   QFGF  G  T D+ +II+     +LE   D  +VALD  GAF +V    +++ L A G++G    L + YL GR
Sbjct:  377 VDVGKATGPDDVSPRLLKHCARELSAPLTTVFTSCLREKKWPSVWKEARVVPVHKKNSRSEPNNYRPISLLSVMGKLLEKIVAAAIYQHLSENHLLSDRQFGFRPGRSTADLLLIISKDWQDALEEGLDTLVVALDIAGAFDRVWHAGLVKKLCAKGIQGNLLALLEDYLQGR 549          
BLAST of mRNA_H-akashiwo_Contig1166.5.1 vs. uniprot
Match: UPI001E1D5DCD (uncharacterized protein LOC123531125 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D5DCD)

HSP 1 Score: 125 bits (313), Expect = 5.270e-30
Identity = 69/173 (39.88%), Postives = 99/173 (57.23%), Query Frame = 1
Query:    1 LDESKSVGPDEVSPCVLKHCAKELDGPLARLFQKVERAADFPDSWKVARVTPVYKKGDATNPKNYRPVSVLPTLATTFERVLMPQLSSFLYEH--IPPEQFGFLRGTGTVDVGVIIADQIVRSLEVRKDVRLVALDFKGAFGKVLRREVLEHLGAVGVRGRAFKLFKSYLSGR 513
            +D SK+ GPD VSP  L+  A  L  PLA  F  + R+++FP  WK+A VTP++KK D + P NYRP+S+L  +    ER +   + + L  H  + P Q GF++G  T++    + + I R+L+  K+VR V  D   AF +V  R VL  L  +GVRG   +   SYLS R
Sbjct:  491 MDPSKASGPDLVSPRHLREGAPALAQPLATFFNTLLRSSNFPSQWKLANVTPIFKKSDPSLPSNYRPISLLSCIGKLMERCVHKHIYNHLIMHNLLTPNQSGFVKGDSTINQLSYLYNDICRALDEGKEVRAVFCDISKAFDRVWHRGVLYKLSRLGVRGSLLQWLSSYLSSR 663          
BLAST of mRNA_H-akashiwo_Contig1166.5.1 vs. uniprot
Match: A0A0P4VTV9_SCYOL (Reverse transcriptase domain-containing protein n=1 Tax=Scylla olivacea TaxID=85551 RepID=A0A0P4VTV9_SCYOL)

HSP 1 Score: 119 bits (298), Expect = 5.360e-28
Identity = 68/173 (39.31%), Postives = 98/173 (56.65%), Query Frame = 1
Query:    1 LDESKSVGPDEVSPCVLKHCAKELDGPLARLFQKVERAADFPDSWKVARVTPVYKKGDATNPKNYRPVSVLPTLATTFERVLMPQLSSFLYEH--IPPEQFGFLRGTGTVDVGVIIADQIVRSLEVRKDVRLVALDFKGAFGKVLRREVLEHLGAVGVRGRAFKLFKSYLSGR 513
            LD  K+ GPD +SP VLK CA+EL  PL  +F        +P  WK ARV PV+K+   ++PKNYRP+S+L  +   FERV+   +   L ++  +  +QFGF  G  T D+ +++      +L+   D  +VALD  GAF +V    +LE L A G++G   +L   YL GR
Sbjct:  223 LDVQKATGPDNISPHVLKQCARELAVPLTTVFSACLWENTWPLVWKEARVVPVHKRSSRSDPKNYRPISLLSVVGKVFERVVADVVCRHLQDNYLLSDQQFGFRPGRSTSDLLMLLTGGWQDALDGGLDSVVVALDIAGAFDRVWHGGLLEKLRAKGIQGDLLQLLGDYLQGR 395          
BLAST of mRNA_H-akashiwo_Contig1166.5.1 vs. uniprot
Match: UPI001E1D1C75 (uncharacterized protein LOC123507079 n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1D1C75)

HSP 1 Score: 119 bits (297), Expect = 7.970e-28
Identity = 63/173 (36.42%), Postives = 98/173 (56.65%), Query Frame = 1
Query:    1 LDESKSVGPDEVSPCVLKHCAKELDGPLARLFQKVERAADFPDSWKVARVTPVYKKGDATNPKNYRPVSVLPTLATTFERVLMPQLSSFLYEH--IPPEQFGFLRGTGTVDVGVIIADQIVRSLEVRKDVRLVALDFKGAFGKVLRREVLEHLGAVGVRGRAFKLFKSYLSGR 513
            LDE+K+VGP ++SP VL+ CA EL  PL  LF      + +P+ WK + V P++KK      KNYRPVS+LP L+   E ++  +++  L  H  +   QFGF +G    D+ ++++ +   +L+  K   +VALD + AF +V    ++  L AV V G    L ++YL  R
Sbjct:  756 LDENKAVGPQDISPHVLRQCAAELARPLTSLFNHCLATSTWPEMWKGSSVVPLHKKNSKAEAKNYRPVSLLPVLSKVLETIVASRVTQHLERHHLLSNRQFGFRQGRSVADLHLLLSTKWSEALDRGKATAVVALDIEAAFDRVWHAALITKLRAVKVDGALLHLLENYLRAR 928          
BLAST of mRNA_H-akashiwo_Contig1166.5.1 vs. uniprot
Match: A0A2B4RRK4_STYPI (Putative RNA-directed DNA polymerase from transposon X-element n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RRK4_STYPI)

HSP 1 Score: 117 bits (293), Expect = 2.030e-27
Identity = 62/172 (36.05%), Postives = 98/172 (56.98%), Query Frame = 1
Query:    4 DESKSVGPDEVSPCVLKHCAKELDGPLARLFQKVERAADFPDSWKVARVTPVYKKGDATNPKNYRPVSVLPTLATTFERVLMPQLSSFLYEH--IPPEQFGFLRGTGTVDVGVIIADQIVRSLEVRKDVRLVALDFKGAFGKVLRREVLEHLGAVGVRGRAFKLFKSYLSGR 513
            D+SK+ G D++S  +++ CA  +  P+  +F +      FPD WK AR+TP+YK+GD  +  NYRP+SV+P +A  FER++  QL ++L EH  +   Q GF     TV   +   D    +++  K   ++ LD K AF  V  + +L  L   G+ G++F+ F+SYL  R
Sbjct:  110 DKSKATGLDKISARLIRECADLICVPICDIFNQSISQGTFPDDWKYARITPLYKQGDRGDANNYRPISVIPIMAKVFERIVYEQLYAYLEEHDILCQNQSGFRANHSTVTALLEATDSWAYNIDNEKINGVIFLDLKKAFDTVDHQILLSKLNYYGIHGKSFRWFQSYLENR 281          
BLAST of mRNA_H-akashiwo_Contig1166.5.1 vs. uniprot
Match: Q0MWX5_9NEOP (Reverse transcriptase (Fragment) n=1 Tax=Phengaris teleius TaxID=203778 RepID=Q0MWX5_9NEOP)

HSP 1 Score: 110 bits (274), Expect = 3.240e-27
Identity = 56/164 (34.15%), Postives = 89/164 (54.27%), Query Frame = 1
Query:   22 GPDEVSPCVLKHCAKELDGPLARLFQKVERAADFPDSWKVARVTPVYKKGDATNPKNYRPVSVLPTLATTFERVLMPQLSSFLYEHIPPEQFGFLRGTGTVDVGVIIADQIVRSLEVRKDVRLVALDFKGAFGKVLRREVLEHLGAVGVRGRAFKLFKSYLSGR 513
            GPD + P  ++ C   L  PL+ +F K      FPD WK+A++TP+YK GD  +  NYRP+S+L  LA  FE ++   L + +   + P+Q GF+ G  T+   ++ ++ + +S   +  V  + LDF  AF +V    +L  L  +G+ G   + F SYL  R
Sbjct:    1 GPDGIPPFFVRMCGSALSTPLSIIFNKSLSQGTFPDLWKIAKITPIYKCGDKNDVTNYRPISILNCLAKIFEGMIYDSLYNHILHCLSPKQHGFISGKSTLSNLLVYSNFLCQSFNKKSQVDSIYLDFSKAFDRVNHNVLLIKLQHLGIHGDLHRWFHSYLINR 164          
BLAST of mRNA_H-akashiwo_Contig1166.5.1 vs. uniprot
Match: A0A0V0J566_SCHSO (Putative RNA-directed DNA polymerase from transposon X-element (Fragment) n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0V0J566_SCHSO)

HSP 1 Score: 116 bits (290), Expect = 6.250e-27
Identity = 63/173 (36.42%), Postives = 93/173 (53.76%), Query Frame = 1
Query:    1 LDESKSVGPDEVSPCVLKHCAKELDGPLARLFQKVERAADFPDSWKVARVTPVYKKGDATNPKNYRPVSVLPTLATTFERVLMPQLSSFLYEH--IPPEQFGFLRGTGTVDVGVIIADQIVRSLEVRKDVRLVALDFKGAFGKVLRREVLEHLGAVGVRGRAFKLFKSYLSGR 513
            L+ESKS GPD++ P +LK  A EL  PL+ +FQ    A   P  WK AR+TP+YK G   +  NYRP+S+        E+++  +L  FL +H  +  EQ GF  G   V   +   +   R+++    + +V +DFK AF  V  + +L  L   G+RG   +  KS+L GR
Sbjct:  315 LNESKSPGPDDIPPKLLKELAAELAKPLSMIFQTSFEAGTLPADWKSARITPLYKGGSKVSANNYRPISLTSICCKLMEKIIKRELMRFLEQHKLLSDEQHGFRSGRSCVTNLLYCLEHWTRAVDEGSALHVVYIDFKKAFDSVPHQRLLHKLNRTGIRGNLLRWIKSFLFGR 487          
BLAST of mRNA_H-akashiwo_Contig1166.5.1 vs. uniprot
Match: A0A0V0J9S5_SCHSO (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0V0J9S5_SCHSO)

HSP 1 Score: 111 bits (278), Expect = 7.710e-27
Identity = 61/173 (35.26%), Postives = 92/173 (53.18%), Query Frame = 1
Query:    1 LDESKSVGPDEVSPCVLKHCAKELDGPLARLFQKVERAADFPDSWKVARVTPVYKKGDATNPKNYRPVSVLPTLATTFERVLMPQLSSFLYEH--IPPEQFGFLRGTGTVDVGVIIADQIVRSLEVRKDVRLVALDFKGAFGKVLRREVLEHLGAVGVRGRAFKLFKSYLSGR 513
            L++SKS GPD++ P +LK  A EL  PL+ +FQ    A   P  WK AR+TP+YK G   +  NY P+S+        E+++  +L  FL +H  +  EQ GF  G   V   +   +   R+++    + +V +DFK AF  V  + +L  L   G+RG   +  KS+L GR
Sbjct:   34 LNKSKSPGPDDIPPKLLKELAAELAKPLSMIFQTSFEAGTLPADWKSARITPLYKGGSKVSANNYWPISLTSICCKLMEKIIKRELMRFLEQHKLLSDEQHGFRSGRSCVTNLLYCLEHWTRAVDEGSALHVVYIDFKKAFDSVPHQRLLHKLNRTGIRGNLLRWIKSFLFGR 206          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1166.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y8Z6_HETAK9.890e-7673.68Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y8N4_HETAK6.940e-7473.68Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0P4VX79_SCYOL3.580e-3139.31Uncharacterized protein n=1 Tax=Scylla olivacea Ta... [more]
UPI001E1D5DCD5.270e-3039.88uncharacterized protein LOC123531125 n=1 Tax=Merce... [more]
A0A0P4VTV9_SCYOL5.360e-2839.31Reverse transcriptase domain-containing protein n=... [more]
UPI001E1D1C757.970e-2836.42uncharacterized protein LOC123507079 n=1 Tax=Portu... [more]
A0A2B4RRK4_STYPI2.030e-2736.05Putative RNA-directed DNA polymerase from transpos... [more]
Q0MWX5_9NEOP3.240e-2734.15Reverse transcriptase (Fragment) n=1 Tax=Phengaris... [more]
A0A0V0J566_SCHSO6.250e-2736.42Putative RNA-directed DNA polymerase from transpos... [more]
A0A0V0J9S5_SCHSO7.710e-2735.26Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1166contigH-akashiwo_Contig1166:187367..187891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog400682.PAC_15702487
PFAMs2OG-FeII_Oxy_2,Exo_endo_phos_2,RVT_1
Model size525
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.67e-29
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3AK7D@33154|Opisthokonta,3BPZQ@33208|Metazoa
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size525
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387103.9740777-CDS-H-akashiwo_Contig1166:187366..1878911681387103.9740777-CDS-H-akashiwo_Contig1166:187366..187891Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1166 187367..187891 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1166.5.1prot_H-akashiwo_Contig1166.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1166 187367..187891 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1166.5.1

>prot_H-akashiwo_Contig1166.5.1 ID=prot_H-akashiwo_Contig1166.5.1|Name=mRNA_H-akashiwo_Contig1166.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=175bp
LDESKSVGPDEVSPCVLKHCAKELDGPLARLFQKVERAADFPDSWKVARV
TPVYKKGDATNPKNYRPVSVLPTLATTFERVLMPQLSSFLYEHIPPEQFG
FLRGTGTVDVGVIIADQIVRSLEVRKDVRLVALDFKGAFGKVLRREVLEH
LGAVGVRGRAFKLFKSYLSGRLYS*
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mRNA from alignment at H-akashiwo_Contig1166:187367..187891-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1166.5.1 ID=mRNA_H-akashiwo_Contig1166.5.1|Name=mRNA_H-akashiwo_Contig1166.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=525bp|location=Sequence derived from alignment at H-akashiwo_Contig1166:187367..187891- (Heterosigma akashiwo CCMP452)
CTGGACGAGTCCAAATCGGTTGGCCCGGATGAAGTCAGTCCATGTGTCCT CAAGCACTGCGCCAAGGAGCTGGACGGTCCGTTGGCCCGCCTGTTTCAGA AGGTAGAAAGGGCGGCAGATTTCCCGGACAGCTGGAAGGTGGCCCGGGTG ACTCCGGTGTACAAAAAGGGTGATGCTACAAATCCCAAGAACTACCGGCC AGTCTCGGTGCTGCCAACCCTGGCGACAACTTTTGAGCGCGTGCTGATGC CTCAGTTGAGCTCTTTCCTGTATGAGCACATCCCGCCGGAACAATTTGGC TTCTTGCGTGGTACGGGCACCGTGGACGTTGGCGTCATCATTGCTGACCA GATTGTCCGGTCACTTGAGGTTAGGAAGGATGTGAGGCTTGTGGCTTTGG ACTTCAAGGGCGCCTTCGGCAAGGTCTTGCGGAGGGAGGTGCTTGAGCAC CTGGGAGCGGTAGGGGTGCGGGGCAGAGCCTTCAAGCTTTTTAAAAGCTA CCTGTCAGGCAGACTCTATTCGTAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1166:187367..187891-

>mRNA_H-akashiwo_Contig1166.5.1 ID=mRNA_H-akashiwo_Contig1166.5.1|Name=mRNA_H-akashiwo_Contig1166.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=525bp|location=Sequence derived from alignment at H-akashiwo_Contig1166:187367..187891- (Heterosigma akashiwo CCMP452)
CTGGACGAGTCCAAATCGGTTGGCCCGGATGAAGTCAGTCCATGTGTCCT
CAAGCACTGCGCCAAGGAGCTGGACGGTCCGTTGGCCCGCCTGTTTCAGA
AGGTAGAAAGGGCGGCAGATTTCCCGGACAGCTGGAAGGTGGCCCGGGTG
ACTCCGGTGTACAAAAAGGGTGATGCTACAAATCCCAAGAACTACCGGCC
AGTCTCGGTGCTGCCAACCCTGGCGACAACTTTTGAGCGCGTGCTGATGC
CTCAGTTGAGCTCTTTCCTGTATGAGCACATCCCGCCGGAACAATTTGGC
TTCTTGCGTGGTACGGGCACCGTGGACGTTGGCGTCATCATTGCTGACCA
GATTGTCCGGTCACTTGAGGTTAGGAAGGATGTGAGGCTTGTGGCTTTGG
ACTTCAAGGGCGCCTTCGGCAAGGTCTTGCGGAGGGAGGTGCTTGAGCAC
CTGGGAGCGGTAGGGGTGCGGGGCAGAGCCTTCAAGCTTTTTAAAAGCTA
CCTGTCAGGCAGACTCTATTCGTAG
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