mRNA_H-akashiwo_Contig1165.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1165.2.1
Unique NamemRNA_H-akashiwo_Contig1165.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1165.2.1 vs. uniprot
Match: A0A7S4DAL7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAL7_HETAK)

HSP 1 Score: 127 bits (318), Expect = 1.630e-32
Identity = 54/65 (83.08%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:    1 CLQIGYFSIIWKKGCLSVLPKPGKDDYSVIKSYRPITLLPVLGKGFEKVLLERLNHHATLSSWFH 195
            CL+IGYFS++WK+G LSVLPKPGKDDYS++KSYRPITLLPVLGKGFEK+LLERLNHHA++ SWFH
Sbjct:  115 CLKIGYFSVLWKRGFLSVLPKPGKDDYSILKSYRPITLLPVLGKGFEKLLLERLNHHASVGSWFH 179
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BLAST of mRNA_H-akashiwo_Contig1165.2.1 vs. uniprot
Match: A0A821WEK4_9NEOP (Hypothetical protein n=2 Tax=Pieris macdunnoughi TaxID=345717 RepID=A0A821WEK4_9NEOP)

HSP 1 Score: 81.3 bits (199), Expect = 1.990e-16
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 CLQIGYFSIIWKKGCLSVLPKPGKDDYSVIKSYRPITLLPVLGKGFEKVLLERLNHH 171
            CL +GYF  IWKK  + VL KPGKDDY+  KSYRPI LLPVLGK  EK++++RLN H
Sbjct:  180 CLDLGYFPSIWKKATVIVLKKPGKDDYNQPKSYRPIGLLPVLGKIMEKMMVKRLNWH 236
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BLAST of mRNA_H-akashiwo_Contig1165.2.1 vs. uniprot
Match: A0A4C1ZUR0_EUMVA (RNA-directed DNA polymerase from mobile element jockey n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1ZUR0_EUMVA)

HSP 1 Score: 77.0 bits (188), Expect = 4.220e-16
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 CLQIGYFSIIWKKGCLSVLPKPGKDDYSVIKSYRPITLLPVLGKGFEKVLLERLNHH 171
            CLQ+GYF   WK   + V+PKPGKDDYS  KSYRPI LLPV+GK  E++L+ R+  H
Sbjct:    5 CLQLGYFPRAWKVATIKVIPKPGKDDYSRPKSYRPIGLLPVMGKTVERMLVWRIQWH 61
[Close]
BLAST of mRNA_H-akashiwo_Contig1165.2.1 vs. uniprot
Match: A0A4C2AAA3_EUMVA (115 kDa protein in type-1 retrotransposable element R1DM n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C2AAA3_EUMVA)

HSP 1 Score: 77.0 bits (188), Expect = 1.010e-15
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 CLQIGYFSIIWKKGCLSVLPKPGKDDYSVIKSYRPITLLPVLGKGFEKVLLERLNHH 171
            CLQ+GYF   WK   + V+PKPGKDDYS  KSYRPI LLPV+GK  E++L+ R+  H
Sbjct:   51 CLQLGYFPRAWKVATIKVIPKPGKDDYSRPKSYRPIGLLPVMGKTVERMLVWRIQWH 107
[Close]
BLAST of mRNA_H-akashiwo_Contig1165.2.1 vs. uniprot
Match: A0A4C2ACA4_EUMVA (115 kDa protein in type-1 retrotransposable element R1DM n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C2ACA4_EUMVA)

HSP 1 Score: 77.0 bits (188), Expect = 2.250e-15
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 CLQIGYFSIIWKKGCLSVLPKPGKDDYSVIKSYRPITLLPVLGKGFEKVLLERLNHH 171
            CL++GYF   WK   + V+PKPGKDDY+  KSYRPI LLPVLGK  E++L+ RL  H
Sbjct:  200 CLELGYFPRAWKVAAIKVIPKPGKDDYARPKSYRPIGLLPVLGKTVERMLVGRLQWH 256
[Close]
BLAST of mRNA_H-akashiwo_Contig1165.2.1 vs. uniprot
Match: A0A4C1UR77_EUMVA (115 kDa protein in type-1 retrotransposable element R1DM n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1UR77_EUMVA)

HSP 1 Score: 75.5 bits (184), Expect = 2.440e-15
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 CLQIGYFSIIWKKGCLSVLPKPGKDDYSVIKSYRPITLLPVLGKGFEKVLLERLNHH 171
            CL++GYF   WK   + V+PKPGK+DY+  KSYRPI LLPVLGK  E++L+ RL  H
Sbjct:    5 CLELGYFPRAWKVAAIKVIPKPGKEDYARPKSYRPIGLLPVLGKTVERMLVGRLQWH 61
[Close]
BLAST of mRNA_H-akashiwo_Contig1165.2.1 vs. uniprot
Match: A0A4C1ZXI3_EUMVA (115 kDa protein in type-1 retrotransposable element R1DM n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1ZXI3_EUMVA)

HSP 1 Score: 77.0 bits (188), Expect = 2.570e-15
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 CLQIGYFSIIWKKGCLSVLPKPGKDDYSVIKSYRPITLLPVLGKGFEKVLLERLNHH 171
            CLQ+GYF   WK   + V+PKPGKDDYS  KSYRPI LLPV+GK  E++L+ R+  H
Sbjct:  179 CLQLGYFPRAWKVATIKVIPKPGKDDYSRPKSYRPIGLLPVMGKTVERMLVWRIQWH 235
[Close]
BLAST of mRNA_H-akashiwo_Contig1165.2.1 vs. uniprot
Match: A0A4C1UBA2_EUMVA (115 kDa protein in type-1 retrotransposable element R1DM n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1UBA2_EUMVA)

HSP 1 Score: 75.9 bits (185), Expect = 2.610e-15
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 CLQIGYFSIIWKKGCLSVLPKPGKDDYSVIKSYRPITLLPVLGKGFEKVLLERLNHHA 174
            CL++GYF   WK   + V+PKPGK+DY+  KSYRPI LLPVLGK  E++L+ RL  H+
Sbjct:  139 CLELGYFPRAWKVAAIKVIPKPGKEDYARPKSYRPIGLLPVLGKTVERMLVGRLQWHS 196
[Close]
BLAST of mRNA_H-akashiwo_Contig1165.2.1 vs. uniprot
Match: A0A4C1X961_EUMVA (115 kDa protein in type-1 retrotransposable element R1DM n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1X961_EUMVA)

HSP 1 Score: 75.5 bits (184), Expect = 3.610e-15
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 CLQIGYFSIIWKKGCLSVLPKPGKDDYSVIKSYRPITLLPVLGKGFEKVLLERLNHH 171
            CL++GYF   WK   + V+PKPGK+DY+  KSYRPI LLPVLGK  E++L+ RL  H
Sbjct:    5 CLELGYFPRAWKVAAIKVIPKPGKEDYARPKSYRPIGLLPVLGKTVERMLVGRLQWH 61
[Close]
BLAST of mRNA_H-akashiwo_Contig1165.2.1 vs. uniprot
Match: A0A4C1YG10_EUMVA (RNA-directed DNA polymerase from mobile element jockey n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1YG10_EUMVA)

HSP 1 Score: 73.2 bits (178), Expect = 4.230e-15
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    4 LQIGYFSIIWKKGCLSVLPKPGKDDYSVIKSYRPITLLPVLGKGFEKVLLERLNHH 171
            L++GYF  ++K   + V+PKPGKDDY+ +KSYRPI LLPVLGK  E++L+ RL  H
Sbjct:    6 LELGYFPRVYKVAAVKVIPKPGKDDYARLKSYRPIGLLPVLGKTVERMLVGRLQWH 61
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1165.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DAL7_HETAK1.630e-3283.08Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A821WEK4_9NEOP1.990e-1664.91Hypothetical protein n=2 Tax=Pieris macdunnoughi T... [more]
A0A4C1ZUR0_EUMVA4.220e-1659.65RNA-directed DNA polymerase from mobile element jo... [more]
A0A4C2AAA3_EUMVA1.010e-1559.65115 kDa protein in type-1 retrotransposable elemen... [more]
A0A4C2ACA4_EUMVA2.250e-1559.65115 kDa protein in type-1 retrotransposable elemen... [more]
A0A4C1UR77_EUMVA2.440e-1557.89115 kDa protein in type-1 retrotransposable elemen... [more]
A0A4C1ZXI3_EUMVA2.570e-1559.65115 kDa protein in type-1 retrotransposable elemen... [more]
A0A4C1UBA2_EUMVA2.610e-1556.90115 kDa protein in type-1 retrotransposable elemen... [more]
A0A4C1X961_EUMVA3.610e-1557.89115 kDa protein in type-1 retrotransposable elemen... [more]
A0A4C1YG10_EUMVA4.230e-1557.14RNA-directed DNA polymerase from mobile element jo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1165contigH-akashiwo_Contig1165:261782..261976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7029.ACYPI39190-PA
PFAMsExo_endo_phos_2,RVT_1
Model size195
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.93e-14
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota
DescriptionRibonuclease H protein
Cds size195
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387103.8461514-CDS-H-akashiwo_Contig1165:261781..2619761681387103.8461514-CDS-H-akashiwo_Contig1165:261781..261976Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1165 261782..261976 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1165.2.1prot_H-akashiwo_Contig1165.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1165 261782..261976 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1165.2.1

>prot_H-akashiwo_Contig1165.2.1 ID=prot_H-akashiwo_Contig1165.2.1|Name=mRNA_H-akashiwo_Contig1165.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=65bp
CLQIGYFSIIWKKGCLSVLPKPGKDDYSVIKSYRPITLLPVLGKGFEKVL
LERLNHHATLSSWFH
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mRNA from alignment at H-akashiwo_Contig1165:261782..261976-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1165.2.1 ID=mRNA_H-akashiwo_Contig1165.2.1|Name=mRNA_H-akashiwo_Contig1165.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=195bp|location=Sequence derived from alignment at H-akashiwo_Contig1165:261782..261976- (Heterosigma akashiwo CCMP452)
TGTCTTCAGATCGGTTATTTCTCTATCATATGGAAAAAAGGCTGTCTCTC
CGTACTTCCTAAGCCAGGCAAAGATGACTACTCAGTTATCAAGTCCTACA
GACCGATCACGTTGCTGCCTGTGTTGGGTAAAGGTTTTGAAAAAGTGTTA
CTAGAACGTCTTAACCATCATGCCACTTTAAGTTCATGGTTTCAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1165:261782..261976-

>mRNA_H-akashiwo_Contig1165.2.1 ID=mRNA_H-akashiwo_Contig1165.2.1|Name=mRNA_H-akashiwo_Contig1165.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=195bp|location=Sequence derived from alignment at H-akashiwo_Contig1165:261782..261976- (Heterosigma akashiwo CCMP452)
TGTCTTCAGATCGGTTATTTCTCTATCATATGGAAAAAAGGCTGTCTCTC
CGTACTTCCTAAGCCAGGCAAAGATGACTACTCAGTTATCAAGTCCTACA
GACCGATCACGTTGCTGCCTGTGTTGGGTAAAGGTTTTGAAAAAGTGTTA
CTAGAACGTCTTAACCATCATGCCACTTTAAGTTCATGGTTTCAT
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