mRNA_H-akashiwo_Contig1164.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1164.9.1
Unique NamemRNA_H-akashiwo_Contig1164.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1164.9.1 vs. uniprot
Match: A0A7S3Y089_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y089_HETAK)

HSP 1 Score: 146 bits (368), Expect = 1.840e-41
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:   10 LQVKFWLFENFLSPTFKDSAAAMAKEAGFEVGYVTYKWPEWLRQQTEKQRIIWGYKILFLDVLFPLSVKK 219
            ++VKFWLFENFLSPTFKDSAAAMAKEAGFEVGYVTYKWPEWLRQQTEKQRIIWGYKILFLDVLFPLSVKK
Sbjct:   69 MKVKFWLFENFLSPTFKDSAAAMAKEAGFEVGYVTYKWPEWLRQQTEKQRIIWGYKILFLDVLFPLSVKK 138
[Close]
BLAST of mRNA_H-akashiwo_Contig1164.9.1 vs. uniprot
Match: A0A7S0AGZ5_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AGZ5_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.320e-33
Identity = 57/69 (82.61%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:   13 QVKFWLFENFLSPTFKDSAAAMAKEAGFEVGYVTYKWPEWLRQQTEKQRIIWGYKILFLDVLFPLSVKK 219
            +VKFWLFENFLSP+FK +A AMAK+ G EVG+VTYKWPEWLR Q+EKQRIIWGYKILFLDVLFPL VKK
Sbjct:   44 KVKFWLFENFLSPSFKATATAMAKKIGCEVGFVTYKWPEWLRAQSEKQRIIWGYKILFLDVLFPLDVKK 112
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BLAST of mRNA_H-akashiwo_Contig1164.9.1 vs. uniprot
Match: A0A7S1GBB5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GBB5_9STRA)

HSP 1 Score: 121 bits (304), Expect = 2.190e-32
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:   10 LQVKFWLFENFLSPTFKDSAAAMAKEAGFEVGYVTYKWPEWLRQQTEKQRIIWGYKILFLDVLFPLSVKK 219
            L VKFWL ENFLSP FK+    MA++ GF+VG+VTYKWP WLRQQTEKQRIIWGYKILFLDVLFPL+VKK
Sbjct:   21 LPVKFWLVENFLSPAFKEFVPRMAEQYGFQVGFVTYKWPNWLRQQTEKQRIIWGYKILFLDVLFPLNVKK 90
[Close]
BLAST of mRNA_H-akashiwo_Contig1164.9.1 vs. uniprot
Match: A0A7S2S3P5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S3P5_9STRA)

HSP 1 Score: 125 bits (313), Expect = 9.280e-32
Identity = 57/70 (81.43%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:   10 LQVKFWLFENFLSPTFKDSAAAMAKEAGFEVGYVTYKWPEWLRQQTEKQRIIWGYKILFLDVLFPLSVKK 219
            + VKFWLFENFLSPTFK+SA AMA+  GFEV +VTYKWP WLRQQT KQRIIWGYKILFLDVLFPL+V K
Sbjct:  400 MPVKFWLFENFLSPTFKESAEAMAQAYGFEVAFVTYKWPSWLRQQTSKQRIIWGYKILFLDVLFPLNVNK 469
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BLAST of mRNA_H-akashiwo_Contig1164.9.1 vs. uniprot
Match: A0A7S2P3J5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P3J5_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.100e-31
Identity = 53/70 (75.71%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:   10 LQVKFWLFENFLSPTFKDSAAAMAKEAGFEVGYVTYKWPEWLRQQTEKQRIIWGYKILFLDVLFPLSVKK 219
            ++VKFWLFENFLSP+FK SA AMA + G ++ +VTYKWPEWLR QTEKQRIIWGYKILFLDVLFPL++K+
Sbjct:   20 VKVKFWLFENFLSPSFKSSALAMASKIGCDIEFVTYKWPEWLRAQTEKQRIIWGYKILFLDVLFPLNLKR 89
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BLAST of mRNA_H-akashiwo_Contig1164.9.1 vs. uniprot
Match: A0A7S1GNZ6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GNZ6_CYCTE)

HSP 1 Score: 122 bits (306), Expect = 2.420e-31
Identity = 56/69 (81.16%), Postives = 62/69 (89.86%), Query Frame = 1 
Query:   13 QVKFWLFENFLSPTFKDSAAAMAKEAGFEVGYVTYKWPEWLRQQTEKQRIIWGYKILFLDVLFPLSVKK 219
            +VKFWLFENFLSPTFK +A +MA+  G EVG+VTYKWPEWLR Q+EKQRIIWGYKILFLDVLFPL VKK
Sbjct:  204 KVKFWLFENFLSPTFKATATSMAETIGCEVGFVTYKWPEWLRGQSEKQRIIWGYKILFLDVLFPLDVKK 272
[Close]
BLAST of mRNA_H-akashiwo_Contig1164.9.1 vs. uniprot
Match: A0A7S2AIV0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AIV0_9STRA)

HSP 1 Score: 124 bits (310), Expect = 2.780e-31
Identity = 55/70 (78.57%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:   10 LQVKFWLFENFLSPTFKDSAAAMAKEAGFEVGYVTYKWPEWLRQQTEKQRIIWGYKILFLDVLFPLSVKK 219
            + +KFWLFEN+LSPTFK SA  MA+E GFE+G+VTYKWP WLRQQT KQRIIWGYKILFLDVLFPL+V K
Sbjct: 1361 MPIKFWLFENYLSPTFKRSAEVMAEEYGFELGFVTYKWPSWLRQQTSKQRIIWGYKILFLDVLFPLNVNK 1430
[Close]
BLAST of mRNA_H-akashiwo_Contig1164.9.1 vs. uniprot
Match: A0A7R9UBE5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UBE5_9STRA)

HSP 1 Score: 122 bits (307), Expect = 4.370e-31
Identity = 55/70 (78.57%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:   10 LQVKFWLFENFLSPTFKDSAAAMAKEAGFEVGYVTYKWPEWLRQQTEKQRIIWGYKILFLDVLFPLSVKK 219
            ++VKFWLFENFL+P FK SA  +A+E GF+V +VTYKWP WLRQQTEKQRIIWGYKILFLDVLFPL+VKK
Sbjct:  426 VKVKFWLFENFLTPAFKKSAMVLAQEYGFDVAFVTYKWPGWLRQQTEKQRIIWGYKILFLDVLFPLNVKK 495
[Close]
BLAST of mRNA_H-akashiwo_Contig1164.9.1 vs. uniprot
Match: A0A1E7G021_9STRA (Putative UDP-glucose:glyco protein glucosyltransferase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7G021_9STRA)

HSP 1 Score: 122 bits (307), Expect = 7.070e-31
Identity = 57/69 (82.61%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:   13 QVKFWLFENFLSPTFKDSAAAMAKEAGFEVGYVTYKWPEWLRQQTEKQRIIWGYKILFLDVLFPLSVKK 219
            +VKFWLFENFLSPTFK S+ AMAK+ G EV +VTYKWPEWLR Q+EKQRIIWGYKILFLDVLFPL+VKK
Sbjct: 1471 KVKFWLFENFLSPTFKASSIAMAKKIGCEVEFVTYKWPEWLRGQSEKQRIIWGYKILFLDVLFPLNVKK 1539
[Close]
BLAST of mRNA_H-akashiwo_Contig1164.9.1 vs. uniprot
Match: A0A7R9WTU1_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WTU1_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.250e-30
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:   13 QVKFWLFENFLSPTFKDSAAAMAKEAGFEVGYVTYKWPEWLRQQTEKQRIIWGYKILFLDVLFPLSVKK 219
            +VKFWLFENFLSP+FK SA AMA   G EV +VTYKWPE+LR QTEKQR+IWGYKILFLDVLFPL+VKK
Sbjct:   16 KVKFWLFENFLSPSFKASARAMADRIGCEVEFVTYKWPEFLRGQTEKQRVIWGYKILFLDVLFPLNVKK 84
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1164.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y089_HETAK1.840e-4197.14Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0AGZ5_9STRA2.320e-3382.61Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S1GBB5_9STRA2.190e-3278.57Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2S3P5_9STRA9.280e-3281.43Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2P3J5_9STRA1.100e-3175.71Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1GNZ6_CYCTE2.420e-3181.16Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2AIV0_9STRA2.780e-3178.57Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9UBE5_9STRA4.370e-3178.57Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A1E7G021_9STRA7.070e-3182.61Putative UDP-glucose:glyco protein glucosyltransfe... [more]
A0A7R9WTU1_9STRA1.250e-3079.71Hypothetical protein n=1 Tax=Craspedostauros austr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1164contigH-akashiwo_Contig1164:181450..183176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog159749.K0R168
PFAMsUDP-g_GGTase
Model size221
Max annot lvl2836|Bacillariophyta
KEGG koko:K11718
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.39e-30
EggNOG OGsKOG1879@1|root,KOG1879@2759|Eukaryota,2XFNQ@2836|Bacillariophyta
DescriptionUDP-glucose:Glycoprotein Glucosyltransferase
Cds size219
COG categoryG
CAZyGT24
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387103.7143939-CDS-H-akashiwo_Contig1164:181449..1815481681387103.7143939-CDS-H-akashiwo_Contig1164:181449..181548Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1164 181450..181548 +
1681387103.73027-CDS-H-akashiwo_Contig1164:183056..1831761681387103.73027-CDS-H-akashiwo_Contig1164:183056..183176Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1164 183057..183176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1164.9.1prot_H-akashiwo_Contig1164.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1164 181450..183176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1164.9.1

>prot_H-akashiwo_Contig1164.9.1 ID=prot_H-akashiwo_Contig1164.9.1|Name=mRNA_H-akashiwo_Contig1164.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=73bp
MHFLQVKFWLFENFLSPTFKDSAAAMAKEAGFEVGYVTYKWPEWLRQQTE
KQRIIWGYKILFLDVLFPLSVKK
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mRNA from alignment at H-akashiwo_Contig1164:181450..183176+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1164.9.1 ID=mRNA_H-akashiwo_Contig1164.9.1|Name=mRNA_H-akashiwo_Contig1164.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1727bp|location=Sequence derived from alignment at H-akashiwo_Contig1164:181450..183176+ (Heterosigma akashiwo CCMP452)
ATGCACTTTTTGCAGGTCAAGTTTTGGCTTTTTGAGAATTTCCTGTCCCC
CACTTTCAAAGACAGTGCCGCTGCAATGGCGAAGGAGGCAGGCTTCGAGG
TGAGGTTTCGAACTCAATTTAAATACTAGTATAATGCTCCATAGGTAATG
TAAGACAACAACATATATATGAGTGTTTTCTGCACCTCAGCATTTTTTTT
TCAATAAGAAAGAGATGAGCTCTGGTTCTCAAAAGTTGTTGTTAAGGAAT
GTTGGGTAGTGAATCTAGTAGTGAAGGTTTTGCAATGAACTTATCTTTAT
TGGTTAGGTACAATAGCAGGTGACAGACAACTGTTGTTTCAACTCTTCTT
GGAGCCAATCATCAGTGCCCCATAGCTATATGCAACTGTGCAATATTGAA
AGCTACATTTTTTTCGCCTTTCCTGGAATCATTGTTGGGAGTGGTCCTCC
CTCCTAGTACGGAGGATGTCCTCTGCACGACGAGAGAGAAAAAAATCAGT
GCTGCTGTGCTGTGTAGGTGCATACTGATACTGAGCTCCTTGTGGTTGCC
ATGCGCTCGAGTATTGTTGTGGGCATACTCTTGTCTATATACAAGAAGAG
AGGTACAGTGTCCGTGGAGAGAGAGAGCACCTGTTGCCAGTATGGATGGT
GGAAACCAGTTCGACGTTTTCATGTCAGTTGTAACTGTGTATCCTTGTTG
TTGCAATCGCCATGTTGGAGATGTCGAGTACATAATCATCTTTTGAGCAA
AGCGAGTGTCAGTTACTTTGGTTTAAGTTGTCAGCACAGATTACCATCGC
ATGAGACCTGAAAACATAAAAACAGCTAGTATCGCATCGTTATAGCATCC
TCGTTGTGATGTGCTCTTTGCCATATAGAGCAGGTGGCAGTGGGAGCAGA
CACGCAAGCAGGGACCGGAGTGGTCGCATTCAGCATCGTTACTACATACT
CAGAGTAGTAGAAGGTCGGGTCCAATTTCTTTCAAAATAAAACCGATTGA
AGGAAGCCTTGGAAAGCTTGGTCTGCAATCGAGTGCGCTATAACGCTTTG
TGAGCGCAGAACCCCAAAGGTCACGACACGTGATTAGGAAGTAACCTGTC
AAGTTAGCAGTGAAGCCTCAAAGTGACGCTGCTTGTTCTCACGAAAGTCA
CCAGAGCATTACGGAATGTTGGGTAGTGAATCTAGTAGAGAAGGTTGTGA
AATGAATTTATTTTTATCGGTTAGGTACAATAGCAGGTGACAGATAGCTG
TTATTTTGGCTCTCCTTAGGGCCAATCATCTGTGCCCCATAGCTACATGC
AACTGTGCAATATATTGAAAGCTATCTATCACATGTGAAAAAAAAGGTAG
AAGTGCTGGCTGTCTATGTATTTCGTATGTACATATCCATATGAATGCGT
TGATAATTTTATGAAAACTGTATGAATAATATACATTGATAGATACATAT
CTCAAAGAGAAGTTTCAGGGCCTGCCAGTTGAAAAAGTGCTGTGCTCACA
CTTTACACCATCTTTGAAGTAGTAGTTGATTGGCAAAAAAAGCCTCTATA
TATAAAGCTGCACAAAAAAGTTGACTATGTTATTCCTCGCGGCGACGGCG
GAGGCAGGTGGGCTACGTGACTTACAAGTGGCCGGAGTGGCTCCGCCAGC
AGACCGAGAAGCAGCGCATCATCTGGGGCTACAAGATCCTCTTCCTGGAC
GTGCTGTTCCCCCTCAGCGTCAAGAAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1164:181450..183176+

>mRNA_H-akashiwo_Contig1164.9.1 ID=mRNA_H-akashiwo_Contig1164.9.1|Name=mRNA_H-akashiwo_Contig1164.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=219bp|location=Sequence derived from alignment at H-akashiwo_Contig1164:181450..183176+ (Heterosigma akashiwo CCMP452)
ATGCACTTTTTGCAGGTCAAGTTTTGGCTTTTTGAGAATTTCCTGTCCCC
CACTTTCAAAGACAGTGCCGCTGCAATGGCGAAGGAGGCAGGCTTCGAGG
TGGGCTACGTGACTTACAAGTGGCCGGAGTGGCTCCGCCAGCAGACCGAG
AAGCAGCGCATCATCTGGGGCTACAAGATCCTCTTCCTGGACGTGCTGTT
CCCCCTCAGCGTCAAGAAG
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