mRNA_H-akashiwo_Contig1164.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1164.5.1
Unique NamemRNA_H-akashiwo_Contig1164.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1164.5.1 vs. uniprot
Match: A0A7S3UMK7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UMK7_HETAK)

HSP 1 Score: 518 bits (1333), Expect = 4.740e-185
Identity = 257/258 (99.61%), Postives = 258/258 (100.00%), Query Frame = 1
Query:    1 GFPGHLDSKQESAYEAVRQKITPDQLRVIKFEVETEESALCRFLRARKFDIGATTAMIDECVKIKQEHNAQEALQIGPEELLGAPEDIFNTFNPFWYVGHDKHGNVLSVQKCGLLNTAAMATVCDPANALRYHWYSMESLNAQFEQCISETGQCRIGVTCIIDMEGFKARKFTSQARHYLKTVSHLDSFCYPELMARIFIVNAPKVFSAAWQAVRPFLDSRTVAKISIYSSAAAARSAMLEYVDEEALPAEFGGRAVA 774
            GFPGHLDSKQESAYEAVRQKITPDQLRVIKFEVETEESALCRFLRARKFDIGATTAMI+ECVKIKQEHNAQEALQIGPEELLGAPEDIFNTFNPFWYVGHDKHGNVLSVQKCGLLNTAAMATVCDPANALRYHWYSMESLNAQFEQCISETGQCRIGVTCIIDMEGFKARKFTSQARHYLKTVSHLDSFCYPELMARIFIVNAPKVFSAAWQAVRPFLDSRTVAKISIYSSAAAARSAMLEYVDEEALPAEFGGRAVA
Sbjct:   26 GFPGHLDSKQESAYEAVRQKITPDQLRVIKFEVETEESALCRFLRARKFDIGATTAMIEECVKIKQEHNAQEALQIGPEELLGAPEDIFNTFNPFWYVGHDKHGNVLSVQKCGLLNTAAMATVCDPANALRYHWYSMESLNAQFEQCISETGQCRIGVTCIIDMEGFKARKFTSQARHYLKTVSHLDSFCYPELMARIFIVNAPKVFSAAWQAVRPFLDSRTVAKISIYSSAAAARSAMLEYVDEEALPAEFGGRAVA 283          
BLAST of mRNA_H-akashiwo_Contig1164.5.1 vs. uniprot
Match: A0A7S2UQD7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UQD7_9STRA)

HSP 1 Score: 148 bits (374), Expect = 4.120e-38
Identity = 89/263 (33.84%), Postives = 143/263 (54.37%), Query Frame = 1
Query:    1 GFPGHLDSKQESAYEAVRQKITPD----QLRVIKF-EVETEESALCRFLRARKFDIGATTAMIDECVKIKQEHNAQEALQIGPEELLGAPEDIFNTFNPFWYVGHDKHGNVLSVQKCGLLNTAAMATVCDPANALRYHWYSME-SLNAQFEQCISETGQ--CRIGVTCIIDMEGFKARKFTSQARHYLKTVSHLDSFCYPELMARIFIVNAPKVFSAAWQAVRPFLDSRTVAKISIYSSAAAARSAMLEYVDEEALPAEFGGR 765
            G PG L +++   Y   R ++       +  V  F E E E  ALCR+LRARKF       M++E  +++ E  A++     P   LG  + ++    P  Y G+ K+G  L + K G+LN  AM  +      ++YHWY M    N + ++ + ET    CR    CI+D+E     +  S+A   +K  + +DS C+PE ++R+ IVNAP+ FS +W+ ++ ++D RT  KI I SS +A +  +LE VDE+ LP+++GG+
Sbjct:   70 GMPGELTAEECDVYMKFRDEVEKRGGLFRTTVYCFGEEEGEPYALCRWLRARKFKYNDVITMVEEATQVRAEPRAKDFYP-DPVAALGCDQSVYIQQYPQLYSGNAKNGAPLFISKPGILNVDAMECITTLDGIVKYHWYMMHHDFNMRLKK-MKETNPEFCRFECVCILDLEHLTTAQLGSRALAIIKQQTAIDSVCFPETLSRMVIVNAPRFFSLSWKLIKGWIDQRTANKIEIISSKSAWKKRLLELVDEDQLPSDYGGK 330          
BLAST of mRNA_H-akashiwo_Contig1164.5.1 vs. uniprot
Match: B7FRI5_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FRI5_PHATC)

HSP 1 Score: 130 bits (328), Expect = 1.370e-31
Identity = 88/283 (31.10%), Postives = 137/283 (48.41%), Query Frame = 1
Query:    1 GFPGHLDSKQESAYEAVRQKITP--DQLRVIKF---EVETEESALCRFLRARKFDIGATTAMIDECVKIKQEHNAQEALQIGPEELLGAPEDIFNTFNPFWYVGHDKHGNVLSVQKCGLLNTAAMATVCDPANALRYHWYSM-----------ESLNAQFEQCI----SETGQ--------CRIGVTCIIDMEGFKARKFTSQARHYLKTVSHLDSFCYPELMARIFIVNAPKVFSAAWQAVRPFLDSRTVAKISIYSSAAAARSAMLEYVDEEALPAEFGGR 765
            G PGHL S +   +   R ++       R   +   E E E  AL R+LRARKF      AM+ E  + ++E  A++     P E L     ++    P  Y G  K+G  L + K G+LN   +  +      L++HWY M           +  N  F++      S+ G         CR    CI+D+    A K T +A   +K  + +D+ C+PE M ++FIVNAP  F+A W+ +R +LD+RT  KI + SS A     +L++VD + LP+++GG+
Sbjct:   41 GIPGHLTSDEADTFAKFRAEVLKRDGDFRDTVYCFGEEEGEVWALGRWLRARKFVYDDVIAMVQEATETRKEAKAKDFYP-DPVEALHVDTSLYFAQYPQLYSGVAKNGAPLFISKPGILNVDGVECITTLDGILKFHWYVMMHDFANRLRDQKKNNPGFKRVDPGLDSQRGLTLESSLVFCRFECVCILDLSQLTASKLTRRALAIIKEQAAVDAICFPETMCKMFIVNAPTFFTATWRLIRGWLDARTAGKIDVISSRATMEKKLLDFVDADQLPSDYGGK 322          
BLAST of mRNA_H-akashiwo_Contig1164.5.1 vs. uniprot
Match: A0A7S2WPJ4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WPJ4_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.870e-31
Identity = 81/261 (31.03%), Postives = 129/261 (49.43%), Query Frame = 1
Query:    1 GFPGHLDSKQESAYEAVRQKITPD----QLRVIKF-EVETEESALCRFLRARKFDIGATTAMIDECVKIKQEHNAQEALQIGPEELLGAPEDIFNTFNPFWYVGHDKHGNVLSVQKCGLLNTAAMATVCDPANALRYHWYSM--ESLNAQFEQCISETGQCRIGVTCIIDMEGFKARKFTSQARHYLKTVSHLDSFCYPELMARIFIVNAPKVFSAAWQAVRPFLDSRTVAKISIYSSAAAARSAMLEYVDEEALPAEFGG 762
            GFPG L  +Q   Y   R ++       +  V  F E E E   L R+LRARK+       M++E V+ +    A +    G  + LG    I+    P  Y G  K G  L + K G+L + A+  +      L++HW+ M  +  N   +   +    CR    CI+D+     ++ TS     +K  S +DS C+PE M ++ I+NAP+ FS  W+ ++ ++D RT  K+ +YSS + A   +LE VD+  LP+++GG
Sbjct:   63 GFPGELTHEQVEVYNKFRDEVNKRGGDFKQAVYSFGECEGEAFTLTRWLRARKYKYEDVITMVEEAVECRASAKADDFYPDG-FQALGCDTAIYLAQFPQMYTGKAKTGCPLFISKPGVLQSDALECITTMEGILKFHWHVMVHDYGNRLRQYKEANPSFCRFESFCILDLAHLSMQQLTSTCLDIVKKQSFIDSLCFPETMNKMIIINAPRFFSLTWKVIKGWIDVRTANKVELYSSKSVATKRLLELVDKNELPSDYGG 322          
BLAST of mRNA_H-akashiwo_Contig1164.5.1 vs. uniprot
Match: A0A7S3PEI3_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PEI3_9STRA)

HSP 1 Score: 123 bits (309), Expect = 4.540e-29
Identity = 81/245 (33.06%), Postives = 133/245 (54.29%), Query Frame = 1
Query:   34 SAYEAVRQKITPDQLRVIKFEVETEESALCRFLRARKFDIGATTAMIDECVKIKQEHNAQEALQIGPEELLGAPEDIFNTFNPFWYV-GHDKHGNVLSVQKCGLLNTAAMATVCDPANALRYHWYSMESLNAQFEQCISETGQCRIGVTC-IIDMEGFKARKFTSQARHYLKTVSHLDSFCYPELMARIFIVNAPKVFSAAWQAVRPFLDSRTVAKISIYSSAAAARSAMLEYVDEEALPAEFGG 762
            S ++ ++++++ +++  I    E+ ESAL R+L+ARKFDI  T A I + ++    +   + +Q G    L    +    F P  Y    DK G  +  ++ G +++ A+ T+    N +RYH   ME L  +F +    TG+  +  TC I+DM+GF     T +A   +K ++  DS  YPE M  +FI+NAP VFS AW  ++ FLD RTV+KI +    +  +  +LE +  + +PAE GG
Sbjct:   58 SEFDEIKERLSLEEVENICMRGESVESALGRYLQARKFDIDKTEACIRKRLEWANSY-VVKCVQDGKAGCLKCDVEEILQFYPGAYAESPDKVGRPIWYEQTGRVDSYALNTLTSNENFVRYHVCLMEELQDKFLEQSQVTGKY-VNKTCSILDMKGFTLSMLTGEATEIIKMIAKTDSDYYPETMGAMFIINAPTVFSMAWSVIQGFLDPRTVSKIRVCRGESEWKPKLLEEIGCDNMPAELGG 300          
BLAST of mRNA_H-akashiwo_Contig1164.5.1 vs. uniprot
Match: A0A7S1C9S2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9S2_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.740e-28
Identity = 82/261 (31.42%), Postives = 125/261 (47.89%), Query Frame = 1
Query:    1 GFPGHLDSKQESAYEAVRQKITPDQLRVIKFEVETEESALCRFLRARKFDIGATTAMIDECVKIKQEHNAQEALQIGPEELLGAPEDIFNTFNPFWYVGH-DKHGNVLSVQKCGLLNTAAMATVCDPANALRYHWYSMESLNAQFEQCISETGQCRIG------VTCIIDMEGFKARKFTSQARHYLKTVSHLDSFCYPELMARIFIVNAPKVFSAAWQAVRPFLDSRTVAKISIYSSAAAARSAMLEYVDEEALPAEFGG 762
            G+   +  +Q          +T + L  +K+  ET +S L RFLRAR+FD  A  AM       + + +    +    EE+LG  ED F  F    Y+    + G  + V++ G ++   + +V D A  LR H+ ++ES   Q    +  T     G      V  I+DMEG         A +Y++  + +D   YPE+   + I+NAP++FSAAW  V+ FLD RT  KI I SS    +  + E +  +ALP E GG
Sbjct:   35 GYVDDMSDEQRRILAEFSATVTDEALAEVKWAQETRDSCLLRFLRARQFDAAAAGAMFAAARAWRADRDVPATVAASAEEVLGCLEDEFYAFYQQRYLPTLARGGEPVYVERTGRISIEGLLSVTDKARMLRNHFRAVES--TQVALSVRGTRARGAGAAPVETVVTIMDMEGLGTHLINKTAINYVQECTRMDQDNYPEMAGAVVIINAPRIFSAAWGMVKGFLDERTREKIQIMSSPDDWQPRLRELIPPDALPLELGG 293          
BLAST of mRNA_H-akashiwo_Contig1164.5.1 vs. uniprot
Match: A0A7S1GM22_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GM22_CYCTE)

HSP 1 Score: 118 bits (296), Expect = 6.280e-28
Identity = 71/228 (31.14%), Postives = 117/228 (51.32%), Query Frame = 1
Query:   94 EVETEESALCRFLRARKFDIGATTAMIDECVKIKQEHNAQEALQIGPEELLGAPEDIFNTFNPFWYVGHDKHGNVLSVQKCGLLNTAAMATVCDPANALRYHWYSM-----ESLNAQFEQCISETGQCRIGVTCIIDMEGFKARKFTSQARHYLKTVSHLDSFCYPELMARIFIVNAPKVFSAAWQAVRPFLDSRTVAKISIYSSAAAARSAMLEYVDEEALPAEFGG 762
            E E E  ALCR+LRARKFD+     M+ E  +++     +E     P+  LG    ++    P  Y G  K+G  L + K G+LN  A+  +      L++HW+ M     + L AQ ++        R     ++D+      +  ++A   +K  + +DS C+PE M+++ IVNAP  FSA+W+ ++ +LD RT  KI + S  +     + EYVD + +P ++GG
Sbjct:   25 EEEGECWALCRWLRARKFDVNEVVKMVGEATEVRAVAK-KENFYPDPKAALGCDSALYFAQFPQLYTGFAKNGAPLFISKPGVLNVDAVECITTLDGILKFHWFIMMHDFGDRLRAQKKE---NDKFKRFECVIVLDLAHLTTAQLGNRALAIIKEQAKIDSLCFPETMSKMVIVNAPVFFSASWRIIKGWLDPRTSGKIDVISGRSHWEKKIKEYVDVDQIPVDYGG 248          
BLAST of mRNA_H-akashiwo_Contig1164.5.1 vs. uniprot
Match: A0A0G4J272_PLABS (CRAL-TRIO domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J272_PLABS)

HSP 1 Score: 115 bits (288), Expect = 5.000e-27
Identity = 82/273 (30.04%), Postives = 136/273 (49.82%), Query Frame = 1
Query:    1 GFPGHLDSKQESAYEAVRQKITPDQLRVIKFEVETEESA-LCRFLRARKFDIGATTAMIDECVKIKQEHNAQEALQIGP-EELLGAPEDIFNTFNPFWYVGHDKHGNVLSVQKCGLLNTAAMATVCDPANALRYHWYSMESLNAQ-FEQCISETGQCRIGVTCIIDMEGFKARKFTSQARHYLKTVSHLDSFCYPELMARIFIVNAPKVFSAAWQAVRPFLDSRTVAKISIYSSAAAARSAMLEYVDEEALPAEFGGRAVAAGAAGGALLAPW 810
            G  GHL  +Q++ Y+ V  ++  D +    F  E  ++  +CRFLRARKFD   +  MI +  K ++E   +E ++    E+     ++I+    P +Y G DK G  + ++  G L+   M  +      L+   Y  E   +Q F  C    G+       I+D++G    +  S  +  L+ ++H+    YPE + +IFI+NAP +FSA+W+ + P +D  TV KISI   +   ++ +L++VD   LP E+GG    A   G     PW
Sbjct:   14 GQVGHLSPEQQAVYDQVVAELKADGV----FSEERHDAYFICRFLRARKFDPAKSKQMIADYEKWRKEFGVEEIVRTFQYEDADRQVQEIY----PRFYHGVDKEGRPIYIEVLGKLDVKKMMGITTTERILQGFVYEFEKTFSQRFPGCSQVAGRHIETSFTILDLKGVGLFQLPS-VQSILRDITHISKTYYPECVGKIFIINAPFIFSASWRLITPLIDEVTVKKISIMGGSF--QTELLKHVDAAQLPVEYGGTCSCANGCGSVEKGPW 275          
BLAST of mRNA_H-akashiwo_Contig1164.5.1 vs. uniprot
Match: A0A7S3PZE2_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZE2_9STRA)

HSP 1 Score: 118 bits (296), Expect = 7.230e-27
Identity = 80/265 (30.19%), Postives = 131/265 (49.43%), Query Frame = 1
Query:    1 GFPGHLDSKQESAYEAVRQ-KITPDQL---RVIKF-EVETEESALCRFLRARKFDIGATTAMIDECVKIKQEHNAQEALQIGPEEL--LGAPEDIFNTFNPFWYVGHDKHGNVLSVQKCGLLNTAAMATVCDPANALRYHWYSMES--LNAQFEQCISETGQCRIGVTCIIDMEGFKARKFTSQARHYLKTVSHLDSFCYPELMARIFIVNAPKVFSAAWQAVRPFLDSRTVAKISIYSSAAAARSAMLEYVDEEALPAEFGGRA 768
            G PG+L +++   Y   R+  +  DQ     V  F E E E   L R+LRARK+ +  T AM++E    + +    +     P+    LG    I+ +  P  Y G  K G  +   K G LN  A+  +      L YHW+ M+    +   +         R     ++D++     +  S+    +K  + +DS C+PE M ++ IVNAP+ FSA W  ++ FLD+RT AK+ I+SS  AA++ + E + ++ LP+++GG A
Sbjct:  105 GRPGYLTTEEVKVYSQFREWLLKQDQTVKNTVYSFTEAEGEVWTLTRWLRARKYVLANTIAMVNEATAERADPRKADYY---PDAYVALGVDPSIYVSQYPQLYAGFSKDGCPVFYSKPGRLNIDAVEAITTIPGILNYHWHIMQHDYTDRMLKYKEEHPDFTRFECVSVLDLDKLTLGQLGSRTLDIIKKQAFIDSLCFPETMNKMVIVNAPRFFSATWGVIKGFLDARTSAKVEIFSSMTAAKAKLREIISDDNLPSDYGGTA 366          
BLAST of mRNA_H-akashiwo_Contig1164.5.1 vs. uniprot
Match: A0A1Y1Y8Z7_9FUNG (CRAL-TRIO domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y8Z7_9FUNG)

HSP 1 Score: 114 bits (284), Expect = 1.550e-26
Identity = 85/272 (31.25%), Postives = 133/272 (48.90%), Query Frame = 1
Query:    1 GFPGHLDSKQESAYEAVRQKITPDQLRVIKFEVETEESALCRFLRARKFDIGATTAMIDECVKIKQEHNAQEALQIGPEELLGAPEDIFNTFNPFWYVGHDKHGNVLSVQKCGLLNTAAMATVCDPANALRYHWYSMESL-NAQFEQCISETGQCRIGVTC-IIDMEGFKARKFTSQARHYLKTVSHLDSFCYPELMARIFIVNAPKVFSAAWQAVRPFLDSRTVAKISIYSSAAAARSAMLEYVDEEALPAEFGGRAVAAGAAGGALLAPW 810
            G  G L  +QE+     +++IT +   V +     ++  L RFLRARKFDI AT  M  +    ++E    + +Q          + ++    P +Y   DK G  + +++ G L+   +  + D     + H  S E L N +F  C ++ G   I  +C IID++G     F  Q    +K  S +    YPE++ R+FI+NAP +FS+ W+ + PFLD  TV+KI I  S    +S +LEY+D E LPA   G+    G    +   PW
Sbjct:    7 GRVGSLTPEQETTLAQFKKEITEEGFFVPE---RHDDYCLLRFLRARKFDIPATKKMFIDFENWRKEFQVDDLVQNFEFTEAAEVQKVY----PRFYHKTDKEGRPVYIERVGSLDLKKLFAITDEERLTKNHVVSYEVLLNQRFPACTAKAGH-HIETSCTIIDLKGVSLMSFP-QVAGMIKRTSTIAQNYYPEILGRMFIINAPMLFSSVWKLITPFLDEVTVSKIFILGSGY--KSKLLEYIDAENLPAFLNGQCSCPGGCEVSDEGPW 267          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1164.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3UMK7_HETAK4.740e-18599.61Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2UQD7_9STRA4.120e-3833.84Hypothetical protein n=1 Tax=Attheya septentrional... [more]
B7FRI5_PHATC1.370e-3131.10Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2WPJ4_9STRA1.870e-3131.03Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S3PEI3_9STRA4.540e-2933.06Hypothetical protein n=2 Tax=Aplanochytrium stocch... [more]
A0A7S1C9S2_9STRA1.740e-2831.42Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S1GM22_CYCTE6.280e-2831.14Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A0G4J272_PLABS5.000e-2730.04CRAL-TRIO domain-containing protein n=1 Tax=Plasmo... [more]
A0A7S3PZE2_9STRA7.230e-2730.19Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A1Y1Y8Z7_9FUNG1.550e-2631.25CRAL-TRIO domain-containing protein n=1 Tax=Basidi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1164contigH-akashiwo_Contig1164:85176..85985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2850.Phatr42504
PFAMsCRAL_TRIO
Model size810
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.24e-32
EggNOG OGsKOG1471@1|root,KOG1471@2759|Eukaryota,2XA97@2836|Bacillariophyta
DescriptionCRAL/TRIO domain
Cds size810
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387103.6792161-CDS-H-akashiwo_Contig1164:85175..859851681387103.6792161-CDS-H-akashiwo_Contig1164:85175..85985Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1164 85176..85985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1164.5.1prot_H-akashiwo_Contig1164.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1164 85176..85985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1164.5.1

>prot_H-akashiwo_Contig1164.5.1 ID=prot_H-akashiwo_Contig1164.5.1|Name=mRNA_H-akashiwo_Contig1164.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=270bp
GFPGHLDSKQESAYEAVRQKITPDQLRVIKFEVETEESALCRFLRARKFD
IGATTAMIDECVKIKQEHNAQEALQIGPEELLGAPEDIFNTFNPFWYVGH
DKHGNVLSVQKCGLLNTAAMATVCDPANALRYHWYSMESLNAQFEQCISE
TGQCRIGVTCIIDMEGFKARKFTSQARHYLKTVSHLDSFCYPELMARIFI
VNAPKVFSAAWQAVRPFLDSRTVAKISIYSSAAAARSAMLEYVDEEALPA
EFGGRAVAAGAAGGALLAPW
back to top

mRNA from alignment at H-akashiwo_Contig1164:85176..85985-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1164.5.1 ID=mRNA_H-akashiwo_Contig1164.5.1|Name=mRNA_H-akashiwo_Contig1164.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=810bp|location=Sequence derived from alignment at H-akashiwo_Contig1164:85176..85985- (Heterosigma akashiwo CCMP452)
GGGTTTCCCGGGCATCTTGATAGCAAGCAGGAGAGTGCTTATGAAGCAGT TAGGCAGAAAATTACGCCTGACCAACTTCGTGTCATCAAATTCGAGGTCG AAACTGAGGAGAGCGCCCTGTGCCGTTTCCTAAGAGCCCGTAAATTCGAC ATTGGCGCCACAACAGCCATGATTGATGAATGTGTAAAAATAAAGCAGGA GCACAACGCACAGGAGGCTTTGCAAATAGGACCAGAGGAGCTTTTGGGTG CACCAGAGGACATATTCAATACTTTTAACCCGTTCTGGTATGTCGGCCAC GACAAGCATGGGAACGTTTTGTCTGTTCAGAAATGTGGCCTCCTGAACAC TGCAGCAATGGCAACAGTGTGTGACCCCGCCAATGCCCTTCGCTACCACT GGTACAGCATGGAAAGCCTGAATGCGCAATTTGAACAGTGCATTAGCGAA ACTGGCCAATGCCGGATAGGAGTCACCTGCATTATCGACATGGAGGGCTT CAAGGCACGGAAATTCACCTCGCAGGCGCGGCACTACCTGAAGACCGTCT CCCACCTGGACTCCTTCTGCTACCCGGAGCTCATGGCACGCATCTTCATC GTTAATGCCCCCAAGGTGTTCTCCGCCGCCTGGCAGGCCGTCCGCCCGTT CCTGGACTCGCGCACCGTGGCCAAGATCTCCATCTACTCCTCCGCGGCCG CCGCCCGGAGCGCCATGCTCGAGTACGTCGACGAAGAGGCCCTGCCCGCG GAGTTCGGTGGCCGGGCGGTGGCGGCGGGGGCGGCAGGGGGGGCCCTCCT GGCGCCGTGG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1164:85176..85985-

>mRNA_H-akashiwo_Contig1164.5.1 ID=mRNA_H-akashiwo_Contig1164.5.1|Name=mRNA_H-akashiwo_Contig1164.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=810bp|location=Sequence derived from alignment at H-akashiwo_Contig1164:85176..85985- (Heterosigma akashiwo CCMP452)
GGGTTTCCCGGGCATCTTGATAGCAAGCAGGAGAGTGCTTATGAAGCAGT
TAGGCAGAAAATTACGCCTGACCAACTTCGTGTCATCAAATTCGAGGTCG
AAACTGAGGAGAGCGCCCTGTGCCGTTTCCTAAGAGCCCGTAAATTCGAC
ATTGGCGCCACAACAGCCATGATTGATGAATGTGTAAAAATAAAGCAGGA
GCACAACGCACAGGAGGCTTTGCAAATAGGACCAGAGGAGCTTTTGGGTG
CACCAGAGGACATATTCAATACTTTTAACCCGTTCTGGTATGTCGGCCAC
GACAAGCATGGGAACGTTTTGTCTGTTCAGAAATGTGGCCTCCTGAACAC
TGCAGCAATGGCAACAGTGTGTGACCCCGCCAATGCCCTTCGCTACCACT
GGTACAGCATGGAAAGCCTGAATGCGCAATTTGAACAGTGCATTAGCGAA
ACTGGCCAATGCCGGATAGGAGTCACCTGCATTATCGACATGGAGGGCTT
CAAGGCACGGAAATTCACCTCGCAGGCGCGGCACTACCTGAAGACCGTCT
CCCACCTGGACTCCTTCTGCTACCCGGAGCTCATGGCACGCATCTTCATC
GTTAATGCCCCCAAGGTGTTCTCCGCCGCCTGGCAGGCCGTCCGCCCGTT
CCTGGACTCGCGCACCGTGGCCAAGATCTCCATCTACTCCTCCGCGGCCG
CCGCCCGGAGCGCCATGCTCGAGTACGTCGACGAAGAGGCCCTGCCCGCG
GAGTTCGGTGGCCGGGCGGTGGCGGCGGGGGCGGCAGGGGGGGCCCTCCT
GGCGCCGTGG
back to top