mRNA_H-akashiwo_Contig1163.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1163.8.1
Unique NamemRNA_H-akashiwo_Contig1163.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1163.8.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 389 bits (1000), Expect = 5.900e-135
Identity = 194/252 (76.98%), Postives = 219/252 (86.90%), Query Frame = 1
Query:    1 SLRLLLAISANKGYAVDSLDISTAFLNGDVDGDVYVRRPSGFKDPQHPNKVWKLNKALYGLKQSPHLWYLELHEHLLSQGFQRSGYESCLYVCRDSSGGELMVTVYVDDLVISGSTPAMVSDFKRSLASRYDLTDLGELSQILGIK----------YLQQTSFIKDAISKFGLDYLPACRTPMDHIADLTPTPGFKADLSEANRYRSMVGTLA*VANWTRPELAFTVHKLQRSQCNPEPKHFEAAERAFRYL 726
            SLRLLLAISANKGYAVDSLDISTAFLNG +  DVYVR+P  + DPQHPNKVWKLNKALYGLKQSP +WY+ELH+HL S GF+RSG+ESCLY+ RD  G ELMV VYVDDLVISGS+ A+VS+FK+SLAS+Y+LTD GEL+QILGIK          +L QTSFIKDA++KFGLDYLPAC+TP+DH  DLTPTPGFKA+LS+AN YRSMVGTLA VANWTRPELAFTVHKLQR+Q NPEPKHFEA +RAFRYL
Sbjct:   18 SLRLLLAISANKGYAVDSLDISTAFLNGAMTDDVYVRQPPSYVDPQHPNKVWKLNKALYGLKQSPRVWYMELHDHLESLGFKRSGHESCLYIHRDG-GNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268          
BLAST of mRNA_H-akashiwo_Contig1163.8.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 280 bits (717), Expect = 1.010e-90
Identity = 141/188 (75.00%), Postives = 161/188 (85.64%), Query Frame = 1
Query:  208 LELHEHLLSQGFQRSGYESCLYVCRDSSGGELMVTVYVDDLVISGSTPAMVSDFKRSLASRYDLTDLGELSQILGIK----------YLQQTSFIKDAISKFGLDYLPACRTPMDHIADLTPTPGFKADLSEANRYRSMVGTLA*VANWTRPELAFTVHKLQRSQCNPEPKHFEAAERAFRYLKGTQS 741
            +ELH+HL S GF+RSG+ESCLY+ RD  G ELMV VYVDDLVISGS+ A+VS+FK+SLAS+Y LTD GEL+QILGIK          +L QTSFIKDA++KFGLDYLPAC+TP+DH  DLTPTPGFKA+LS+AN YRSMVGTLA VANWTRPELAFTVHKLQR+Q NPEPKHFEA +RAFRYLKGTQS
Sbjct:    1 MELHDHLESLGFKRSGHESCLYIHRDG-GNELMVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQS 187          
BLAST of mRNA_H-akashiwo_Contig1163.8.1 vs. uniprot
Match: A0A7S3Y3B6_HETAK (Hypothetical protein (Fragment) n=6 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3B6_HETAK)

HSP 1 Score: 263 bits (673), Expect = 2.350e-83
Identity = 132/204 (64.71%), Postives = 156/204 (76.47%), Query Frame = 1
Query:    1 SLRLLLAISANKGYAVDSLDISTAFLNGDVDGDVYVRRPSGFKDPQHPNKVWKLNKALYGLKQSPHLWYLELHEHLLSQGFQRSGYESCLYVCRDSSGGE-LMVTVYVDDLVISGSTPAMVSDFKRSLASRYDLTDLGELSQILGIK----------YLQQTSFIKDAISKFGLDYLPACRTPMDHIADLTPTPGFKADLSEAN 579
            SLRL+L+I+ANKG+AV++LDISTAFLN D+DGDVYV++P GF D  HP+KVWKL KALYGL+QSP LWY  LHE LL Q F RS YESCLY  ++S  GE  MV VYVDDLV+S + P++VS  K S  SR+ +TDLG L+ ILGIK          YL Q SF++DAISKFGLDYLPACRTPM +  DLTPTPGFKA L +AN
Sbjct:  206 SLRLMLSIAANKGHAVEALDISTAFLNSDIDGDVYVKQPPGFVDKDHPHKVWKLKKALYGLRQSPRLWYNTLHEFLLQQNFVRSDYESCLYTRKNSVTGEDTMVAVYVDDLVLSSNIPSVVSSLKSSFVSRFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFVRDAISKFGLDYLPACRTPMTNATDLTPTPGFKASLPDAN 409          
BLAST of mRNA_H-akashiwo_Contig1163.8.1 vs. uniprot
Match: A0A7S3Y3C5_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3C5_HETAK)

HSP 1 Score: 194 bits (494), Expect = 2.640e-56
Identity = 96/147 (65.31%), Postives = 116/147 (78.91%), Query Frame = 1
Query:    1 SLRLLLAISANKGYAVDSLDISTAFLNGDVDGDVYVRRPSGFKDPQHPNKVWKLNKALYGLKQSPHLWYLELHEHLLSQGFQRSGYESCLYVCRDSSGGE-LMVTVYVDDLVISGSTPAMVSDFKRSLASRYDLTDLGELSQILGIK 438
            SLRL+L+I+ANKG+AV++LDISTAFLN D+DGDVYV++P GF D  HP+KVWKL KALYGL+QSP LWY  LHE LL Q F RS YESCLY  ++S  GE  MV VYVDDLV+S + P++VS  K S  SR+ +TDLG L+ ILGIK
Sbjct:  277 SLRLMLSIAANKGHAVEALDISTAFLNSDIDGDVYVKQPPGFVDKDHPHKVWKLKKALYGLRQSPRLWYNTLHEFLLQQNFVRSDYESCLYTRKNSVTGEDTMVAVYVDDLVLSSNIPSVVSSLKSSFVSRFSITDLGPLTSILGIK 423          
BLAST of mRNA_H-akashiwo_Contig1163.8.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 182 bits (463), Expect = 4.530e-49
Identity = 97/258 (37.60%), Postives = 158/258 (61.24%), Query Frame = 1
Query:    1 SLRLLLAISANKGYAVDSLDISTAFLNGDVDGDVYVRRPSGFKDPQHPNKVWKLNKALYGLKQSPHLWYLELHEHLLSQGFQRSGYESCLYVCRDSSGGELMVTVYVDDLVISGSTPAMVSDFKRSLASRYDLTDLGELSQILGIKY----------LQQTSFIKDAISKFGLDYLPACRTPMDHIADLTPTPGFKADLS--EANRYRSMVGTLA*VANWTRPELAFTVHKLQRSQCNPEPKHFEAAERAFRYLKGTQ 738
            SLR +L I+A++   +  +DI TAFL+G ++ D+Y+++P G++ P   +KV KL K+LYGLKQ+P  WY  L+  LL QG+ R+GY+SC+Y    S+GG+ +++VYVDD+V++ S  + +S  K++++  Y+++D+GE+  ILGIK           L Q SFI++A  KF +        P++   D+         LS  EA ++RS+VGT+  +A WT PE+A+++H L +   +P      A+    RYL  T+
Sbjct:  576 SLRTVLTIAASEDMEIHCMDIKTAFLHGKLEEDIYMKQPEGYEVPGMEHKVLKLKKSLYGLKQAPKCWYQNLNGFLLQQGYTRNGYDSCVYSKVSSTGGKTLISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTE 833          
BLAST of mRNA_H-akashiwo_Contig1163.8.1 vs. uniprot
Match: A0A540M9F0_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540M9F0_MALBA)

HSP 1 Score: 176 bits (447), Expect = 1.450e-48
Identity = 97/255 (38.04%), Postives = 149/255 (58.43%), Query Frame = 1
Query:    1 SLRLLLAISANKGYAVDSLDISTAFLNGDVDGDVYVRRPSGFKDPQHPNKVWKLNKALYGLKQSPHLWYLELHEHLLSQGFQRSGYESCLYVCRDSSGGELMVTVYVDDLVISGSTPAMVSDFKRSLASRYDLTDLGELSQILGIKYLQ--------QTSFIKDAISKFGLDYLPACRTPMDHIADLTPTPGFKADLSEANRYRSMVGTLA*VANWTRPELAFTVHKLQRSQCNPEPKHFEAAERAFRYLKGTQS 741
            ++R L+A++A KG+ +  LD+ +AFLNG ++ +VY+ +P GF+     +KV+KL KALYGLKQ+P  WY E+  +L S  F RS  E+ LY   D  GG L+V++YVDD+V +GS+  ++S+FK  +  +Y+++DLG L   LG+  LQ        Q+ + K  + KFGL+       P+     L    G  ++ ++   YR +VG+L  +   TRP+L +    L R    P  KHF  A R  RY++GT S
Sbjct:   95 TIRTLIALAAQKGWKLFQLDVKSAFLNGILEEEVYIEQPEGFEVKNACHKVYKLRKALYGLKQAPRAWYSEIDAYLTSCNFIRSTSEATLYTKSDEEGGILIVSIYVDDIVYTGSSKTLLSEFKMEMMQKYEMSDLGLLHHFLGMGILQTENGVFIHQSKYAKSLLVKFGLEDCKPVSIPLPTGEKLKKVDG--SEFADETMYRKIVGSLLYLTA-TRPDLMYAASLLSRFMNGPTKKHFGIARRVLRYVQGTLS 346          
BLAST of mRNA_H-akashiwo_Contig1163.8.1 vs. uniprot
Match: A0A151SM08_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SM08_CAJCA)

HSP 1 Score: 180 bits (457), Expect = 3.220e-48
Identity = 98/253 (38.74%), Postives = 149/253 (58.89%), Query Frame = 1
Query:    1 SLRLLLAISANKGYAVDSLDISTAFLNGDVDGDVYVRRPSGFKDPQHPNKVWKLNKALYGLKQSPHLWYLELHEHLLSQGFQRSGYESCLYVCRDSSGGELMVTVYVDDLVISGSTPAMVSDFKRSLASRYDLTDLGELSQILGIK--------YLQQTSFIKDAISKFGLDYLPACRTPMDHIADLTPTPGFKADLSEANRYRSMVGTLA*VANWTRPELAFTVHKLQRSQCNPEPKHFEAAERAFRYLKGT 735
            SLR LLAI+A+K + +D +D+  AFLNGD+D +VY++ P G+  P  P+KV +L KALYGLKQ+P  W+ + H+ +   GF  S Y++ L++ R+  G  +++ +YVDD++I+G     +S+ K+ L   +++ DLG LS  LGI+        +L Q  +  D IS+ GL       TP++  A  TP  G    L +   YR +VG+L      TRP++A+ VH + +  C P   HF A  R  RY+KGT
Sbjct:  755 SLRTLLAIAASKKWFIDQMDVKNAFLNGDLDAEVYMQPPPGYSCP--PHKVCRLRKALYGLKQAPRSWFAKFHDTIAQLGFTSSTYDNALFIRRNDHGTVILL-LYVDDMIITGDDSNGISELKQFLNLHFEMKDLGSLSYFLGIQILSCDDGLFLSQAKYASDLISRAGLTDCKTESTPLETRAHFTPLDG--TPLEDPTLYRQLVGSLI-YLTVTRPDIAYAVHLVSQFMCAPRSTHFAAVLRIIRYIKGT 1001          
BLAST of mRNA_H-akashiwo_Contig1163.8.1 vs. uniprot
Match: A0A5H2XKG5_PRUDU (BURP domain-containing protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2XKG5_PRUDU)

HSP 1 Score: 175 bits (444), Expect = 3.960e-48
Identity = 96/253 (37.94%), Postives = 147/253 (58.10%), Query Frame = 1
Query:    1 SLRLLLAISANKGYAVDSLDISTAFLNGDVDGDVYVRRPSGFKDPQHPNKVWKLNKALYGLKQSPHLWYLELHEHLLSQGFQRSGYESCLYVCRDSSGGELMVTVYVDDLVISGSTPAMVSDFKRSLASRYDLTDLGELSQILGIKYLQ--------QTSFIKDAISKFGLDYLPACRTPMDHIADLTPTPGFKADLSEANRYRSMVGTLA*VANWTRPELAFTVHKLQRSQCNPEPKHFEAAERAFRYLKGT 735
            ++R L+A++A KG+ +  LD+ +AFLNG +  +VYV +P GF    + +KV+KL KALYGLKQ+P  WY E++ +L+S G+ RS  E+ LY       G L+V++YVDD+V +GS+  ++ +FK  +  RY++TDLG L   LG+  +Q        Q  +    + KFGL       TP+     L    G  +D ++ N YR +VG+L  +   TRP++ F    L R    P  KH+  A+R  RY++GT
Sbjct:   95 TIRTLIALAAQKGWKLYQLDVKSAFLNGVLKEEVYVDQPDGFVTTNYEDKVYKLKKALYGLKQAPRAWYEEINAYLVSCGYVRSTSEATLYCKTKEDSGTLIVSIYVDDIVYTGSSEELIDEFKTEMMRRYEMTDLGLLYHFLGMAVIQTESCIFINQKKYALTLLDKFGLKQCKPVSTPLVATEKLCKDDG--SDPADENEYRQIVGSLLYLTA-TRPDIMFAASLLARFMHCPTKKHYGTAKRVLRYIQGT 344          
BLAST of mRNA_H-akashiwo_Contig1163.8.1 vs. uniprot
Match: A0A438HRV0_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HRV0_VITVI)

HSP 1 Score: 175 bits (444), Expect = 4.850e-48
Identity = 92/253 (36.36%), Postives = 153/253 (60.47%), Query Frame = 1
Query:    1 SLRLLLAISANKGYAVDSLDISTAFLNGDVDGDVYVRRPSGFKDPQHPNKVWKLNKALYGLKQSPHLWYLELHEHLLSQGFQRSGYESCLYVCRDSSGGELMVTVYVDDLVISGSTPAMVSDFKRSLASRYDLTDLGELSQILGIK--------YLQQTSFIKDAISKFGLDYLPACRTPMDHIADLTPTPGFKADLSEANRYRSMVGTLA*VANWTRPELAFTVHKLQRSQCNPEPKHFEAAERAFRYLKGT 735
            ++RLLLA++   G+ V  LD+ +AFLNG +  ++YV++P GF+   H +KV+KL+KALYGLKQ+P  WY  +  HL+  GF+RS  E+ LY+ ++  G +L+V++YVDD++++GS   +++DFK  +   ++++DLG ++  LG++        ++ Q  +  D + KF L+      TP+     ++   G K  L E + YRS+VG+L      T+P+L F    L R   +P   H   A+R  +Y+KGT
Sbjct:  110 TIRLLLALAGQMGWKVYHLDVKSAFLNGILLEEIYVQQPEGFEVIGHEHKVYKLHKALYGLKQAPRAWYSRIDSHLIQLGFRRSENEATLYLKQNDDGLQLVVSLYVDDMLVTGSNVKLLADFKMEMQDVFEMSDLGIMNYFLGMEIYQCSWGIFISQRKYAMDILKKFKLESCKEVATPLAQNEKISKNDGEK--LEEPSAYRSLVGSLL-YLTVTKPDLMFPASLLSRFMSSPSNVHMGVAKRVLKYVKGT 359          
BLAST of mRNA_H-akashiwo_Contig1163.8.1 vs. uniprot
Match: W9QMZ8_9ROSA (ABC-type xenobiotic transporter n=1 Tax=Morus notabilis TaxID=981085 RepID=W9QMZ8_9ROSA)

HSP 1 Score: 179 bits (455), Expect = 6.610e-48
Identity = 99/253 (39.13%), Postives = 154/253 (60.87%), Query Frame = 1
Query:    1 SLRLLLAISANKGYAVDSLDISTAFLNGDVDGDVYVRRPSGFKDPQHPNKVWKLNKALYGLKQSPHLWYLELHEHLLSQGFQRSGYESCLYVCRDSSGGELMVTVYVDDLVISGSTPAMVSDFKRSLASRYDLTDLGELSQILGIKYLQ--------QTSFIKDAISKFGLDYLPACRTPMDHIADLTPTPGFKADLSEANRYRSMVGTLA*VANWTRPELAFTVHKLQRSQCNPEPKHFEAAERAFRYLKGT 735
            ++RLL+A+ A KG+ +  LD+ +AFLNG +  +++V +P  F    + +KV++L KALYGLKQ+P  WY  + +HLL  GF+RS  E+ LYV + +    L++++YVDDL+I+GS   +V  FK+ + + +++TDLGE+S  LG+K LQ        Q  + KD + KFG++      TP+     L+   G  +D  +A  YRS++G L  +   TRP++ F    L R    P   HF+AA+R  RY+KGT
Sbjct: 1016 TIRLLIALVAQKGWKIFQLDVKSAFLNGYLKEEIFVEQPPCFLKKGNEDKVYQLKKALYGLKQAPRAWYSRIDDHLLQLGFKRSPSEATLYV-QQAGDDLLIISLYVDDLLITGSNITLVQKFKKEMQNVFEMTDLGEMSYFLGMKILQTEQGIFISQEKYAKDVLKKFGMENCKDVSTPLGLNEKLSKEDG--SDKIDAGIYRSLIGCLLYLTA-TRPDIMFATSLLSRFMQAPSEIHFKAAKRVLRYVKGT 1264          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1163.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y6S2_HETAK5.900e-13576.98Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S4DD78_HETAK1.010e-9075.00Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y3B6_HETAK2.350e-8364.71Hypothetical protein (Fragment) n=6 Tax=Heterosigm... [more]
A0A7S3Y3C5_HETAK2.640e-5665.31Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y1P1_HETAK4.530e-4937.60Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A540M9F0_MALBA1.450e-4838.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151SM08_CAJCA3.220e-4838.74Retrovirus-related Pol polyprotein from transposon... [more]
A0A5H2XKG5_PRUDU3.960e-4837.94BURP domain-containing protein n=1 Tax=Prunus dulc... [more]
A0A438HRV0_VITVI4.850e-4836.36Retrovirus-related Pol polyprotein from transposon... [more]
W9QMZ8_9ROSA6.610e-4839.13ABC-type xenobiotic transporter n=1 Tax=Morus nota... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1163contigH-akashiwo_Contig1163:214611..215387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog981085.XP_010091283.1
PFAMsABC_membrane,ABC_tran
Model size741
Max annot lvl35493|Streptophyta
KEGG koko:K05665,ko:K05666,ko:K05670
KEGG TC3.A.1.208,3.A.1.208.2,3.A.1.208.8
KEGG Pathwayko01523,ko01524,ko02010,ko04071,ko04976,ko04977,ko05206,map01523,map01524,map02010,map04071,map04976,map04977,map05206
Hectar predicted targeting categoryother localisation
GOsGO:0000325,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005911,GO:0006810,GO:0008150,GO:0009506,GO:0009605,GO:0009607,GO:0009624,GO:0015399,GO:0015405,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030054,GO:0031090,GO:0042623,GO:0042626,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055044,GO:0055085,GO:0098588,GO:0098805
Exons2
Evalue1.47e-13
EggNOG OGsCOG1132@1|root,COG2801@1|root,KOG0017@2759|Eukaryota,KOG0054@2759|Eukaryota,37PYD@33090|Viridiplantae,3G8VE@35493|Streptophyta,4JDGI@91835|fabids
DescriptionABC transporter C family member
Cds size309
COG categoryQ
BRITEko00000,ko00001,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387103.5052977-UTR-H-akashiwo_Contig1163:214610..2147391681387103.5052977-UTR-H-akashiwo_Contig1163:214610..214739Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1163 214611..214739 -
1681387103.5356154-UTR-H-akashiwo_Contig1163:215084..2153871681387103.5356154-UTR-H-akashiwo_Contig1163:215084..215387Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1163 215085..215387 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387103.5168571-CDS-H-akashiwo_Contig1163:214739..2149131681387103.5168571-CDS-H-akashiwo_Contig1163:214739..214913Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1163 214740..214913 -
1681387103.5260088-CDS-H-akashiwo_Contig1163:214949..2150841681387103.5260088-CDS-H-akashiwo_Contig1163:214949..215084Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1163 214950..215084 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1163.8.1prot_H-akashiwo_Contig1163.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1163 214740..215084 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1163.8.1

>prot_H-akashiwo_Contig1163.8.1 ID=prot_H-akashiwo_Contig1163.8.1|Name=mRNA_H-akashiwo_Contig1163.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=103bp
MVTVYVDDLVISGSTPAMVSDFKRSLASRYDLTDLGELSQILGIKYLQQT
SFIKDAISKFGLDYLPACRTPMDHIADLTPTPGFKADLSEANRYRSMVGT
LA*
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mRNA from alignment at H-akashiwo_Contig1163:214611..215387-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1163.8.1 ID=mRNA_H-akashiwo_Contig1163.8.1|Name=mRNA_H-akashiwo_Contig1163.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=777bp|location=Sequence derived from alignment at H-akashiwo_Contig1163:214611..215387- (Heterosigma akashiwo CCMP452)
AGCCTTCGCTTGTTGCTTGCGATCTCTGCCAACAAGGGCTATGCTGTCGA CTCCCTCGATATCAGTACTGCGTTTCTCAATGGTGATGTCGATGGTGATG TCTATGTCCGTCGGCCTTCTGGTTTTAAAGATCCTCAGCACCCGAACAAG GTCTGGAAACTTAACAAGGCTCTGTACGGGCTCAAGCAGAGCCCGCACTT GTGGTACCTGGAGTTGCATGAACATCTCTTGTCTCAGGGTTTCCAGCGCA GTGGCTATGAGTCCTGCTTATATGTTTGCCGGGATAGCTCAGGTGGTGAG CTCATGGTTACTGTCTACGTTGATGATCTCGTGATCAGTGGCAGCACTCC TGCTATGGTCTCTGATTTTAAACGCTCTCTGGCTTCTAGGTATGACCTCA CTGATCTGGGGGAGCTCAGTCAGATTCTTGGCATCAAGGTCACCAGGGAT AAGCTTCGTAAGTGTTTCTACTAGTATCTCCAACAAACTTCCTTCATCAA GGACGCCATCTCAAAGTTCGGGCTTGATTATTTGCCGGCCTGCAGGACCC CCATGGACCATATTGCGGACCTTACGCCTACCCCTGGTTTCAAGGCTGAT CTCTCTGAGGCTAACAGATACAGGTCTATGGTAGGCACTCTGGCTTAGGT TGCTAACTGGACCAGACCTGAGCTTGCCTTTACTGTTCACAAACTCCAGC GCTCCCAGTGTAATCCTGAGCCCAAGCATTTTGAGGCTGCTGAGCGAGCA TTTAGGTACTTGAAGGGCACCCAGTCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1163:214611..215387-

>mRNA_H-akashiwo_Contig1163.8.1 ID=mRNA_H-akashiwo_Contig1163.8.1|Name=mRNA_H-akashiwo_Contig1163.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=309bp|location=Sequence derived from alignment at H-akashiwo_Contig1163:214611..215387- (Heterosigma akashiwo CCMP452)
ATGGTTACTGTCTACGTTGATGATCTCGTGATCAGTGGCAGCACTCCTGC
TATGGTCTCTGATTTTAAACGCTCTCTGGCTTCTAGGTATGACCTCACTG
ATCTGGGGGAGCTCAGTCAGATTCTTGGCATCAAGTATCTCCAACAAACT
TCCTTCATCAAGGACGCCATCTCAAAGTTCGGGCTTGATTATTTGCCGGC
CTGCAGGACCCCCATGGACCATATTGCGGACCTTACGCCTACCCCTGGTT
TCAAGGCTGATCTCTCTGAGGCTAACAGATACAGGTCTATGGTAGGCACT
CTGGCTTAG
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