mRNA_H-akashiwo_Contig1162.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1162.5.1
Unique NamemRNA_H-akashiwo_Contig1162.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1162.5.1 vs. uniprot
Match: UPI000DD44260 (pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Lentzea terrae TaxID=2200761 RepID=UPI000DD44260)

HSP 1 Score: 70.9 bits (172), Expect = 2.040e-13
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 1
Query:   76 MAQDFEAITPELRDFVHQQPLFFVATAPTAPDGHVNLSPKGMQGTFRFL 222
            M +++E I P+LR+F+ QQ +FFVATAP A DGHVNLSPKG QGT+R L
Sbjct:    1 MGKEYERIVPKLREFIEQQKVFFVATAPLAGDGHVNLSPKGRQGTWRVL 49          
BLAST of mRNA_H-akashiwo_Contig1162.5.1 vs. uniprot
Match: R4LMB5_9ACTN (Pyridoxamine-phosphate oxidase n=1 Tax=Actinoplanes sp. N902-109 TaxID=649831 RepID=R4LMB5_9ACTN)

HSP 1 Score: 70.1 bits (170), Expect = 3.620e-13
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 1
Query:   91 EAITPELRDFVHQQPLFFVATAPTAPDGHVNLSPKGMQGTFRFL 222
            EAIT  LR+F+  QP+FFVATAP+ P GHVN+SPKGM+GTFR L
Sbjct:    5 EAITERLREFIEAQPMFFVATAPSGPHGHVNVSPKGMRGTFRVL 48          
BLAST of mRNA_H-akashiwo_Contig1162.5.1 vs. uniprot
Match: A0A495JQX8_9ACTN (Pyridoxamine 5'-phosphate oxidase n=1 Tax=Micromonospora pisi TaxID=589240 RepID=A0A495JQX8_9ACTN)

HSP 1 Score: 68.9 bits (167), Expect = 9.730e-13
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 1
Query:   76 MAQDFEAITPELRDFVHQQPLFFVATAPTAPDGHVNLSPKGMQGTFRFL 222
            M + +  I   LRDF+  QP+FFVATAP+ PDGHVNLSPKGM GTF  L
Sbjct:    1 MGKIYPGIDARLRDFIQAQPMFFVATAPSGPDGHVNLSPKGMSGTFTIL 49          
BLAST of mRNA_H-akashiwo_Contig1162.5.1 vs. uniprot
Match: UPI000830E660 (pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Actinoplanes sp. TFC3 TaxID=1710355 RepID=UPI000830E660)

HSP 1 Score: 68.9 bits (167), Expect = 9.730e-13
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 1
Query:   91 EAITPELRDFVHQQPLFFVATAPTAPDGHVNLSPKGMQGTFRFL 222
            EAIT  LR F+  QP+FFVATAP  P+GHVNLSPKGM GTFR L
Sbjct:    5 EAITGRLRLFIEAQPMFFVATAPAGPEGHVNLSPKGMHGTFRVL 48          
BLAST of mRNA_H-akashiwo_Contig1162.5.1 vs. uniprot
Match: A0A8J7ASU2_9CYAN (Pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Romeria aff. gracilis LEGE 07310 TaxID=915328 RepID=A0A8J7ASU2_9CYAN)

HSP 1 Score: 68.2 bits (165), Expect = 1.930e-12
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:   76 MAQDFEAITPELRDFVHQQPLFFVATAPTAPDGHVNLSPKGMQGTFRFLS 225
            MA+ FE ITPEL DF+ +Q LFFVATAP  PDGHVNLSPKG   +F+ LS
Sbjct:    1 MAKVFEQITPELADFIQRQALFFVATAPLTPDGHVNLSPKGFD-SFQILS 49          
BLAST of mRNA_H-akashiwo_Contig1162.5.1 vs. uniprot
Match: UPI0012E1177D (pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Actinotalea caeni TaxID=1348467 RepID=UPI0012E1177D)

HSP 1 Score: 67.4 bits (163), Expect = 4.670e-12
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 1
Query:   76 MAQDFEAITPELRDFVHQQPLFFVATAPTAPDGHVNLSPKGMQGTFRFL 222
            M Q ++AITP LR F+   P+FFVATAP +PDGHVN+SPKG+ GTF  +
Sbjct:    1 MGQLYDAITPRLRAFIEAMPVFFVATAPLSPDGHVNVSPKGIGGTFAVV 49          
BLAST of mRNA_H-akashiwo_Contig1162.5.1 vs. uniprot
Match: A0A1B2HSL2_9PSEU (Pyridoxamine 5'-phosphate oxidase n=2 Tax=Actinomycetia TaxID=1760 RepID=A0A1B2HSL2_9PSEU)

HSP 1 Score: 66.2 bits (160), Expect = 1.190e-11
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1
Query:   76 MAQDFEAITPELRDFVHQQPLFFVATAPTAPDGHVNLSPKGMQGTFRFL 222
            M + +E I P LR+F+  Q +FFVATAP A DGHVNLSPKG +GT R L
Sbjct:    1 MGKSYERIEPRLREFIEDQKVFFVATAPLAGDGHVNLSPKGREGTLRIL 49          
BLAST of mRNA_H-akashiwo_Contig1162.5.1 vs. uniprot
Match: A0A3T1B4G2_9ACTN (Pyridoxamine 5'-phosphate oxidase n=1 Tax=Actinoplanes sp. OR16 TaxID=946334 RepID=A0A3T1B4G2_9ACTN)

HSP 1 Score: 65.5 bits (158), Expect = 2.350e-11
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 1
Query:   91 EAITPELRDFVHQQPLFFVATAPTAPDGHVNLSPKGMQGTFRFL 222
            E I   LRDF+  QP+FFVATAP+ PDGHVN+SPKGM GTF  L
Sbjct:    5 ERIDGRLRDFIEAQPMFFVATAPSGPDGHVNVSPKGMGGTFVVL 48          
BLAST of mRNA_H-akashiwo_Contig1162.5.1 vs. uniprot
Match: UPI001F19F345 (pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Leptodesmis sichuanensis TaxID=2906798 RepID=UPI001F19F345)

HSP 1 Score: 65.1 bits (157), Expect = 2.990e-11
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:   76 MAQDFEAITPELRDFVHQQPLFFVATAPTAPDGHVNLSPKGMQGTFRFLS 225
            MA+ F++ITPEL++F+  Q LFFVATAP +P GHVNLSPKG+  +FR LS
Sbjct:    1 MAKVFDSITPELQEFITAQHLFFVATAPLSPTGHVNLSPKGLD-SFRILS 49          
BLAST of mRNA_H-akashiwo_Contig1162.5.1 vs. uniprot
Match: A0A7C9S0L0_9PSEU (Pyridoxamine 5'-phosphate oxidase family protein n=13 Tax=Lentzea TaxID=165301 RepID=A0A7C9S0L0_9PSEU)

HSP 1 Score: 65.1 bits (157), Expect = 3.300e-11
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1
Query:   76 MAQDFEAITPELRDFVHQQPLFFVATAPTAPDGHVNLSPKGMQGTFRFL 222
            M +++E I P L +F+  Q +FFVATAP A DGHVNLSPKG QGT R L
Sbjct:    1 MGKEYERIEPRLWEFIENQKVFFVATAPLAGDGHVNLSPKGRQGTLRIL 49          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1162.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000DD442602.040e-1365.31pyridoxamine 5'-phosphate oxidase family protein n... [more]
R4LMB5_9ACTN3.620e-1370.45Pyridoxamine-phosphate oxidase n=1 Tax=Actinoplane... [more]
A0A495JQX8_9ACTN9.730e-1363.27Pyridoxamine 5'-phosphate oxidase n=1 Tax=Micromon... [more]
UPI000830E6609.730e-1372.73pyridoxamine 5'-phosphate oxidase family protein n... [more]
A0A8J7ASU2_9CYAN1.930e-1268.00Pyridoxamine 5'-phosphate oxidase family protein n... [more]
UPI0012E1177D4.670e-1261.22pyridoxamine 5'-phosphate oxidase family protein n... [more]
A0A1B2HSL2_9PSEU1.190e-1161.22Pyridoxamine 5'-phosphate oxidase n=2 Tax=Actinomy... [more]
A0A3T1B4G2_9ACTN2.350e-1168.18Pyridoxamine 5'-phosphate oxidase n=1 Tax=Actinopl... [more]
UPI001F19F3452.990e-1164.00pyridoxamine 5'-phosphate oxidase family protein n... [more]
A0A7C9S0L0_9PSEU3.300e-1161.22Pyridoxamine 5'-phosphate oxidase family protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1162contigH-akashiwo_Contig1162:154706..155124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog649831.L083_4646
PFAMsPutative_PNPOx
Model size227
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.94e-14
EggNOG OGsCOG3576@1|root,COG3576@2|Bacteria,2GKCF@201174|Actinobacteria,4DBAF@85008|Micromonosporales
DescriptionPyridoxamine 5'-phosphate oxidase
Cds size225
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387102.9606435-CDS-H-akashiwo_Contig1162:154706..1548901681387102.9606435-CDS-H-akashiwo_Contig1162:154706..154890Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1162 154707..154890 -
1681387102.9717035-CDS-H-akashiwo_Contig1162:155083..1551241681387102.9717035-CDS-H-akashiwo_Contig1162:155083..155124Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1162 155084..155124 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1162.5.1prot_H-akashiwo_Contig1162.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1162 154707..155124 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1162.5.1

>prot_H-akashiwo_Contig1162.5.1 ID=prot_H-akashiwo_Contig1162.5.1|Name=mRNA_H-akashiwo_Contig1162.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=75bp
DCFLAGEHQLHHLSPTLRRGQQPPRMAQDFEAITPELRDFVHQQPLFFVA
TAPTAPDGHVNLSPKGMQGTFRFLS
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mRNA from alignment at H-akashiwo_Contig1162:154706..155124-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1162.5.1 ID=mRNA_H-akashiwo_Contig1162.5.1|Name=mRNA_H-akashiwo_Contig1162.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=419bp|location=Sequence derived from alignment at H-akashiwo_Contig1162:154706..155124- (Heterosigma akashiwo CCMP452)
GATTGTTTTCTAGCTGGAGAACATCAGCTGCACCACCTGAGGCAAGACGA ATGGCATGTAACGTTCACAGTGAAAAAGAAAGAATACTCTGAGTAGTCAC ATTTTTTGATGAAGTCCAGTTCGCATGCGGCCGTAAACGTTGCTGCACTC TGCATTCGAATCCACTACTGTTGTCTGAAATGGGATGACCAACAGAACCC CCCGCCCCACCGAACACACACGTAAACCTCACAGTCCCACCCTGCGGCGG GGGCAGCAGCCGCCGCGCATGGCCCAGGACTTTGAGGCCATCACCCCGGA GCTGCGGGACTTCGTGCACCAGCAGCCGCTCTTCTTCGTCGCCACCGCCC CCACCGCGCCCGACGGCCACGTGAACCTCAGCCCCAAGGGCATGCAGGGC ACCTTCCGCTTCCTCTCCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1162:154706..155124-

>mRNA_H-akashiwo_Contig1162.5.1 ID=mRNA_H-akashiwo_Contig1162.5.1|Name=mRNA_H-akashiwo_Contig1162.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=225bp|location=Sequence derived from alignment at H-akashiwo_Contig1162:154706..155124- (Heterosigma akashiwo CCMP452)
GATTGTTTTCTAGCTGGAGAACATCAGCTGCACCACCTGAGTCCCACCCT
GCGGCGGGGGCAGCAGCCGCCGCGCATGGCCCAGGACTTTGAGGCCATCA
CCCCGGAGCTGCGGGACTTCGTGCACCAGCAGCCGCTCTTCTTCGTCGCC
ACCGCCCCCACCGCGCCCGACGGCCACGTGAACCTCAGCCCCAAGGGCAT
GCAGGGCACCTTCCGCTTCCTCTCC
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