mRNA_H-akashiwo_Contig1161.2.1 (mRNA) Heterosigma akashiwo CCMP452
|
Overview
Homology
BLAST of mRNA_H-akashiwo_Contig1161.2.1 vs. uniprot
Match: A0A7S3Y3B6_HETAK (Hypothetical protein (Fragment) n=6 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3B6_HETAK) HSP 1 Score: 362 bits (928), Expect = 8.050e-121 Identity = 176/231 (76.19%), Postives = 200/231 (86.58%), Query Frame = 1
Query: 1 ARLVAQGFTQRAGIDYHSTYAPVIAAPSLRLMLSIAANKGYDVDALDISTAFLNRDIDGDVNVKQPPGFVDKDHPHKV*KLRKSLYGLRQSPRIWYLTLHDFLLQQNFVRSDYEYCLYIRRNPSTGEETMIAVYVDDLVISSSNPSIVSDLKRSFAPRFKITDLGSLNQILGIKVVRDRRSKCFFLSQASFAKDAITKFGLDFLPAVRTPMDHTADLAPTPGYVCSLPDSN 693
ARLVAQGFTQR G+D+ +TY+PVIAAPSLRLMLSIAANKG+ V+ALDISTAFLN DIDGDV VKQPPGFVDKDHPHKV KL+K+LYGLRQSPR+WY TLH+FLLQQNFVRSDYE CLY R+N TGE+TM+AVYVDDLV+SS+ PS+VS LK SF RF ITDLG L ILGIKV RD +KCF+LSQASF +DAI+KFGLD+LPA RTPM + DL PTPG+ SLPD+N
Sbjct: 179 ARLVAQGFTQREGVDFSTTYSPVIAAPSLRLMLSIAANKGHAVEALDISTAFLNSDIDGDVYVKQPPGFVDKDHPHKVWKLKKALYGLRQSPRLWYNTLHEFLLQQNFVRSDYESCLYTRKNSVTGEDTMVAVYVDDLVLSSNIPSVVSSLKSSFVSRFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFVRDAISKFGLDYLPACRTPMTNATDLTPTPGFKASLPDAN 409
BLAST of mRNA_H-akashiwo_Contig1161.2.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK) HSP 1 Score: 355 bits (912), Expect = 1.830e-120 Identity = 173/268 (64.55%), Postives = 210/268 (78.36%), Query Frame = 1
Query: 37 GIDYHSTYAPVIAAPSLRLMLSIAANKGYDVDALDISTAFLNRDIDGDVNVKQPPGFVDKDHPHKV*KLRKSLYGLRQSPRIWYLTLHDFLLQQNFVRSDYEYCLYIRRNPSTGEETMIAVYVDDLVISSSNPSIVSDLKRSFAPRFKITDLGSLNQILGIKVVRDRRSKCFFLSQASFAKDAITKFGLDFLPAVRTPMDHTADLAPTPGYVCSLPDSNRYRSMVGTLAWLANWTRPELAFAVHKLQKFQSNL*PKHFKAAERVFRYL 840
GID+ TY+PV+ A SLRL+L+I+ANKGY VD+LDISTAFLN + DV V+QPP +VD HP+KV KL K+LYGL+QSPR+WY+ LHD L F RS +E CLYI R+ G E M+AVYVDDLVIS S+ +IVS+ K+S A ++ +TD G L QILGIKVVRD+R+KCF LSQ SF KDA+ KFGLD+LPA +TP+DHT DL PTPG+ L D+N YRSMVGTLAW+ANWTRPELAF VHKLQ+ Q N PKHF+A +R FRYL
Sbjct: 3 GIDFQQTYSPVVNAASLRLLLAISANKGYAVDSLDISTAFLNGAMTDDVYVRQPPSYVDPQHPNKVWKLNKALYGLKQSPRVWYMELHDHLESLGFKRSGHESCLYIHRDG--GNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268
BLAST of mRNA_H-akashiwo_Contig1161.2.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK) HSP 1 Score: 292 bits (748), Expect = 2.350e-94 Identity = 142/217 (65.44%), Postives = 170/217 (78.34%), Query Frame = 1
Query: 289 LTLHDFLLQQNFVRSDYEYCLYIRRNPSTGEETMIAVYVDDLVISSSNPSIVSDLKRSFAPRFKITDLGSLNQILGIKVVRDRRSKCFFLSQASFAKDAITKFGLDFLPAVRTPMDHTADLAPTPGYVCSLPDSNRYRSMVGTLAWLANWTRPELAFAVHKLQKFQSNL*PKHFKAAERVFRYLKGTQSERLRLGGDLILRAYTDSDFCQDKQQGKS 939
+ LHD L F RS +E CLYI R+ G E M+AVYVDDLVIS S+ ++VS+ K+S A ++ +TD G L QILGIKVVRD+R+KCF LSQ SF KDA+ KFGLD+LPA +TP+DHT DL PTPG+ L D+N YRSMVGTLAW+ANWTRPELAF VHKLQ+ Q N PKHF+A +R FRYLKGTQSE LRLGGDL+LRA++DSDFC D+ GKS
Sbjct: 1 MELHDHLESLGFKRSGHESCLYIHRDG--GNELMVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKS 215
BLAST of mRNA_H-akashiwo_Contig1161.2.1 vs. uniprot
Match: A0A7S3Y3C5_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3C5_HETAK) HSP 1 Score: 286 bits (733), Expect = 4.420e-91 Identity = 140/178 (78.65%), Postives = 157/178 (88.20%), Query Frame = 1
Query: 1 ARLVAQGFTQRAGIDYHSTYAPVIAAPSLRLMLSIAANKGYDVDALDISTAFLNRDIDGDVNVKQPPGFVDKDHPHKV*KLRKSLYGLRQSPRIWYLTLHDFLLQQNFVRSDYEYCLYIRRNPSTGEETMIAVYVDDLVISSSNPSIVSDLKRSFAPRFKITDLGSLNQILGIKVVRD 534
ARLVAQGFTQR G+D+ +TY+PV+AAPSLRLMLSIAANKG+ V+ALDISTAFLN DIDGDV VKQPPGFVDKDHPHKV KL+K+LYGLRQSPR+WY TLH+FLLQQNFVRSDYE CLY R+N TGE+TM+AVYVDDLV+SS+ PS+VS LK SF RF ITDLG L ILGIKV RD
Sbjct: 250 ARLVAQGFTQREGVDFSATYSPVVAAPSLRLMLSIAANKGHAVEALDISTAFLNSDIDGDVYVKQPPGFVDKDHPHKVWKLKKALYGLRQSPRLWYNTLHEFLLQQNFVRSDYESCLYTRKNSVTGEDTMVAVYVDDLVLSSNIPSVVSSLKSSFVSRFSITDLGPLTSILGIKVSRD 427
BLAST of mRNA_H-akashiwo_Contig1161.2.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK) HSP 1 Score: 252 bits (643), Expect = 5.970e-73 Identity = 129/315 (40.95%), Postives = 209/315 (66.35%), Query Frame = 1
Query: 1 ARLVAQGFTQRAGIDYHSTYAPVIAAPSLRLMLSIAANKGYDVDALDISTAFLNRDIDGDVNVKQPPGFVDKDHPHKV*KLRKSLYGLRQSPRIWYLTLHDFLLQQNFVRSDYEYCLYIRRNPSTGEETMIAVYVDDLVISSSNPSIVSDLKRSFAPRFKITDLGSLNQILGIKVVRDRRSKCFFLSQASFAKDAITKFGLDFLPAVRTPMDHTAD--LAPTPGYVCSLPDSNRYRSMVGTLAWLANWTRPELAFAVHKLQKFQSNL*PKHFKAAERVFRYLKGTQSERLRLGGDLILRAYTDSDFCQDKQQGKS 939
ARL AQG++Q G+DY +T++PV+++ SLR +L+IAA++ ++ +DI TAFL+ ++ D+ +KQP G+ HKV KL+KSLYGL+Q+P+ WY L+ FLLQQ + R+ Y+ C+Y + + STG +T+I+VYVDD+V++SS+ S +S +K++ + + ++D+G + ILGIKV RDR ++ LSQ SF ++A KF + V P++ D + S ++ ++RS+VGT+ WLA WT PE+A+++H L K ++ A+ + RYL T+ + + LGG L L AY D+DFC ++ +G+S
Sbjct: 549 ARLCAQGYSQIEGVDYTNTFSPVVSSASLRTVLTIAASEDMEIHCMDIKTAFLHGKLEEDIYMKQPEGYEVPGMEHKVLKLKKSLYGLKQAPKCWYQNLNGFLLQQGYTRNGYDSCVYSKVS-STGGKTLISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRS 862
BLAST of mRNA_H-akashiwo_Contig1161.2.1 vs. uniprot
Match: H3H1B2_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H1B2_PHYRM) HSP 1 Score: 232 bits (592), Expect = 2.310e-69 Identity = 125/319 (39.18%), Postives = 199/319 (62.38%), Query Frame = 1
Query: 1 ARLVAQGFTQRAGIDYHSTYAPVIAAPSLRLMLSIAANKGYDVDALDISTAFLNRDIDGDVNVKQPPGFVDKDHPHKV*KLRKSLYGLRQSPRIWYLTLHDFLLQQNFVRSDYEYCLYIRRNPSTGEETMIAVYVDDLVISSSNPSIVSDLKRSFAPRFKITDLGSLNQILGIKVVRDRRSKCFFLSQASFAKDAITKFGLDFLPAVRTPMDHTADLAPTPGYVCSLPDSNR----YRSMVGTLAWLANWTRPELAFAVHKLQKFQSNL*PKHFKAAERVFRYLKGTQSERLRLGGDLI--LRAYTDSDFCQDKQQGKS 939
ARLVA+GF+Q+ GIDY T+APV S+R++LS+AA G + +D+ TAFLN +D D+ + QP G+VD+DHP V KL++SLYGL+QSPR+W T+ DF+L+ F + + ++C+Y++R+ + +A+YVDDLV++SS+ ++ D K++ + RF++TD+G L LG+++ +D + + Q FAKD + KF +D V+TP D L D YR+ VG L +L TRP+LA AV L +F ++ P H++A +RVFRY++GT++ + L+ Y+D+D+ D + +S
Sbjct: 89 ARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRDGH--DMIFVALYVDDLVLASSSDKMLLDTKQALSHRFEMTDMGQLKYFLGMEIEQDVVTGKMSMRQTKFAKDILQKFSMDKSNPVKTPQDPGLKLTKAMCEGGCKHDETMVNVPYRNAVGCLMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIQGTKTHGIEFQASCHDGLQGYSDADWAGDIESRRS 405
BLAST of mRNA_H-akashiwo_Contig1161.2.1 vs. uniprot
Match: H3H9M9_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9M9_PHYRM) HSP 1 Score: 229 bits (584), Expect = 6.370e-66 Identity = 127/320 (39.69%), Postives = 198/320 (61.88%), Query Frame = 1
Query: 1 ARLVAQGFTQRAGIDYHSTYAPVIAAPSLRLMLSIAANKGYDVDALDISTAFLNRDIDGDVNVKQPPGFVDKDHPHKV*KLRKSLYGLRQSPRIWYLTLHDFLLQQNFVRSDYEYCLYIRRNPSTGEETM-IAVYVDDLVISSSNPSIVSDLKRSFAPRFKITDLGSLNQILGIKVVRDRRSKCFFLSQASFAKDAITKFGLDFLPAVRTPMDHTADLAPTPGYV-CSLPDSNR---YRSMVGTLAWLANWTRPELAFAVHKLQKFQSNL*PKHFKAAERVFRYLKGTQSERLRL--GGDLILRAYTDSDFCQDKQQGKS 939
ARLVA+GF+Q+ GIDY T+APV S+R++LS+AA G + +D+ TAFLN +D D+ + QP G+VD+DHP V KL++SLYGL+QSPR+W T+ DF+L+ F + + ++C+Y++R+ G++ + +A+YVDDL+++SSN ++ K + + RF++TDLG L LG+++ D S + Q F + +TKFG+ V+TP D L C D+ + YRS VG L +L TRP+LA AV L +F ++ P H++A +RV RYL+ T + L L + Y+D+D+ D + +S
Sbjct: 395 ARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRD---GQDMIFVALYVDDLILASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLQFILTKFGMQDSKPVKTPQDPGLKLTKNMCEGGCQHEDTMKNVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFLREDSLGMCGYSDADWAGDIESRRS 711
BLAST of mRNA_H-akashiwo_Contig1161.2.1 vs. uniprot
Match: H3H839_PHYRM (Integrase catalytic domain-containing protein n=4 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H839_PHYRM) HSP 1 Score: 232 bits (591), Expect = 7.630e-66 Identity = 126/320 (39.38%), Postives = 202/320 (63.12%), Query Frame = 1
Query: 1 ARLVAQGFTQRAGIDYHSTYAPVIAAPSLRLMLSIAANKGYDVDALDISTAFLNRDIDGDVNVKQPPGFVDKDHPHKV*KLRKSLYGLRQSPRIWYLTLHDFLLQQNFVRSDYEYCLYIRRNPSTGEETM-IAVYVDDLVISSSNPSIVSDLKRSFAPRFKITDLGSLNQILGIKVVRDRRSKCFFLSQASFAKDAITKFGLDFLPAVRTPMDHTADLAPTPGYVCSLPDSNR----YRSMVGTLAWLANWTRPELAFAVHKLQKFQSNL*PKHFKAAERVFRYLKGTQSERLRLGGDLI--LRAYTDSDFCQDKQQGKS 939
ARLVA+GF+Q+ GIDY T+APV S+R++LS+AA G + +D+ TAFLN +D D+ + QP G+VD+DHP V KL++SLYGL+QSPR+W T+ DF+L+ F + + ++C+Y++R+ G++ + +A+YVDDLV++SS+ ++ D K++ + RF++TD+G L LG+++ +D + + Q FAKD + KF +D V+TP D L D YR+ VG L +L TRP+LA AV L +F ++ P H++A +RVFRY++GT++ + L+ Y+D+D+ D + +S
Sbjct: 483 ARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRD---GQDMIFVALYVDDLVLASSSDKMLLDTKQALSHRFEMTDMGQLKYFLGMEIEQDVVTGKMSMRQTKFAKDILQKFSMDKSNPVKTPQDPGLKLTKAMCEGGCKHDETMVNVPYRNAVGCLMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIQGTKTHGIESQASCNDGLQGYSDADWAGDIESRRS 799
BLAST of mRNA_H-akashiwo_Contig1161.2.1 vs. uniprot
Match: H3GB73_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB73_PHYRM) HSP 1 Score: 220 bits (560), Expect = 1.010e-65 Identity = 116/290 (40.00%), Postives = 188/290 (64.83%), Query Frame = 1
Query: 1 ARLVAQGFTQRAGIDYHSTYAPVIAAPSLRLMLSIAANKGYDVDALDISTAFLNRDIDGDVNVKQPPGFVDKDHPHKV*KLRKSLYGLRQSPRIWYLTLHDFLLQQNFVRSDYEYCLYIRRNPSTGEETM-IAVYVDDLVISSSNPSIVSDLKRSFAPRFKITDLGSLNQILGIKVVRDRRSKCFFLSQASFAKDAITKFGLDFLPAVRTPMDHTADLAPTPGYVCSLPDSNR----YRSMVGTLAWLANWTRPELAFAVHKLQKFQSNL*PKHFKAAERVFRYLKGTQS 855
ARLVA+GF+Q+ GIDY T+APV S+R++LS+AA G + +D+ TAFL+ +D D+ + QP G+V++DHP V KL++SLYGL+QSPR+W T+ DF+L+ F + + ++C+Y++R+ G++ + +A+Y++D V++SS+ I+ D K++ + RF++TD+G L LG+++ +D + + Q FAKD + KF +D V+TP D L D YR+ VG L +L TRP+LA AV L +F ++ P H++A +RVFRY++GT++
Sbjct: 59 ARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLDGVLDEDIYMAQPDGYVNEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRD---GQDMIFVALYINDFVLASSSDKILLDTKQALSKRFEMTDMGQLKYFLGMEIEQDVVTGKMSMRQTKFAKDIMQKFSMDKSNPVKTPQDPGLKLTKAMCEGGCKHDETMVNVPYRNAVGCLMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIQGTKT 345
BLAST of mRNA_H-akashiwo_Contig1161.2.1 vs. uniprot
Match: A0A4T9WAI5_9FIRM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Bacteria TaxID=2 RepID=A0A4T9WAI5_9FIRM) HSP 1 Score: 224 bits (572), Expect = 2.540e-65 Identity = 124/319 (38.87%), Postives = 197/319 (61.76%), Query Frame = 1
Query: 1 ARLVAQGFTQRAGIDYHSTYAPVIAAPSLRLMLSIAANKGYDVDALDISTAFLNRDIDGDVNVKQPPGFVDKDHPHKV*KLRKSLYGLRQSPRIWYLTLHDFLLQQNFVRSDYEYCLYIRRNPSTGEETMIAVYVDDLVISSSNPSIVSDLKRSFAPRFKITDLGSLNQILGIKVVRDRRSKCFFLSQASFAKDAITKFGLDFLPAVRTPMDHTADLAPTPGYVCSLPDSNR----YRSMVGTLAWLANWTRPELAFAVHKLQKFQSNL*PKHFKAAERVFRYLKGTQSERL--RLGGDLILRAYTDSDFCQDKQQGKS 939
ARLVA+GF+Q+ GIDY T+APV S+R++LS+AA V +D+ TAFLN +D D+ + QP G+VD D P V +L++SLYGL+QSPR+W T+ +F+L+ F + + ++C+Y++R+ + +A+YVDDLV++SS+ ++ D K++ + RF++TD+G L LG+++ +D + + Q FAKD + KF +D V+TP D L D YR+ VG L +L TRP+LA AV L +F ++ P H++A +RVFRY++GT++ L + + L+ Y+D+D+ D KS
Sbjct: 134 ARLVAKGFSQKYGIDYDETFAPVAKFTSIRVLLSLAAKYKLTVHQMDVKTAFLNGLLDEDIYMAQPDGYVDGDRPDYVCRLKRSLYGLKQSPRMWNKTIDEFMLKLGFKKCESDHCIYLKRD--NHDMMFVALYVDDLVLASSSDRMLKDTKQALSDRFEMTDMGQLKYFLGMEIEQDVATGKVSVRQTKFAKDILEKFKMDESNPVKTPQDPGLKLTKAMCEGGCKHDETMANVPYRNAVGCLMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIRGTKTHGLVFQASSEDGLQGYSDADWAGDLADRKS 450 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1161.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig1161.2.1 >prot_H-akashiwo_Contig1161.2.1 ID=prot_H-akashiwo_Contig1161.2.1|Name=mRNA_H-akashiwo_Contig1161.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=137bp MIAVYVDDLVISSSNPSIVSDLKRSFAPRFKITDLGSLNQILGIKVVRDRback to top mRNA from alignment at H-akashiwo_Contig1161:99131..100069- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig1161.2.1 ID=mRNA_H-akashiwo_Contig1161.2.1|Name=mRNA_H-akashiwo_Contig1161.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=939bp|location=Sequence derived from alignment at H-akashiwo_Contig1161:99131..100069- (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig1161:99131..100069- >mRNA_H-akashiwo_Contig1161.2.1 ID=mRNA_H-akashiwo_Contig1161.2.1|Name=mRNA_H-akashiwo_Contig1161.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=411bp|location=Sequence derived from alignment at H-akashiwo_Contig1161:99131..100069- (Heterosigma akashiwo CCMP452)back to top |