mRNA_H-akashiwo_Contig1161.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1161.2.1
Unique NamemRNA_H-akashiwo_Contig1161.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1161.2.1 vs. uniprot
Match: A0A7S3Y3B6_HETAK (Hypothetical protein (Fragment) n=6 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3B6_HETAK)

HSP 1 Score: 362 bits (928), Expect = 8.050e-121
Identity = 176/231 (76.19%), Postives = 200/231 (86.58%), Query Frame = 1
Query:    1 ARLVAQGFTQRAGIDYHSTYAPVIAAPSLRLMLSIAANKGYDVDALDISTAFLNRDIDGDVNVKQPPGFVDKDHPHKV*KLRKSLYGLRQSPRIWYLTLHDFLLQQNFVRSDYEYCLYIRRNPSTGEETMIAVYVDDLVISSSNPSIVSDLKRSFAPRFKITDLGSLNQILGIKVVRDRRSKCFFLSQASFAKDAITKFGLDFLPAVRTPMDHTADLAPTPGYVCSLPDSN 693
            ARLVAQGFTQR G+D+ +TY+PVIAAPSLRLMLSIAANKG+ V+ALDISTAFLN DIDGDV VKQPPGFVDKDHPHKV KL+K+LYGLRQSPR+WY TLH+FLLQQNFVRSDYE CLY R+N  TGE+TM+AVYVDDLV+SS+ PS+VS LK SF  RF ITDLG L  ILGIKV RD  +KCF+LSQASF +DAI+KFGLD+LPA RTPM +  DL PTPG+  SLPD+N
Sbjct:  179 ARLVAQGFTQREGVDFSTTYSPVIAAPSLRLMLSIAANKGHAVEALDISTAFLNSDIDGDVYVKQPPGFVDKDHPHKVWKLKKALYGLRQSPRLWYNTLHEFLLQQNFVRSDYESCLYTRKNSVTGEDTMVAVYVDDLVLSSNIPSVVSSLKSSFVSRFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFVRDAISKFGLDYLPACRTPMTNATDLTPTPGFKASLPDAN 409          
BLAST of mRNA_H-akashiwo_Contig1161.2.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 355 bits (912), Expect = 1.830e-120
Identity = 173/268 (64.55%), Postives = 210/268 (78.36%), Query Frame = 1
Query:   37 GIDYHSTYAPVIAAPSLRLMLSIAANKGYDVDALDISTAFLNRDIDGDVNVKQPPGFVDKDHPHKV*KLRKSLYGLRQSPRIWYLTLHDFLLQQNFVRSDYEYCLYIRRNPSTGEETMIAVYVDDLVISSSNPSIVSDLKRSFAPRFKITDLGSLNQILGIKVVRDRRSKCFFLSQASFAKDAITKFGLDFLPAVRTPMDHTADLAPTPGYVCSLPDSNRYRSMVGTLAWLANWTRPELAFAVHKLQKFQSNL*PKHFKAAERVFRYL 840
            GID+  TY+PV+ A SLRL+L+I+ANKGY VD+LDISTAFLN  +  DV V+QPP +VD  HP+KV KL K+LYGL+QSPR+WY+ LHD L    F RS +E CLYI R+   G E M+AVYVDDLVIS S+ +IVS+ K+S A ++ +TD G L QILGIKVVRD+R+KCF LSQ SF KDA+ KFGLD+LPA +TP+DHT DL PTPG+   L D+N YRSMVGTLAW+ANWTRPELAF VHKLQ+ Q N  PKHF+A +R FRYL
Sbjct:    3 GIDFQQTYSPVVNAASLRLLLAISANKGYAVDSLDISTAFLNGAMTDDVYVRQPPSYVDPQHPNKVWKLNKALYGLKQSPRVWYMELHDHLESLGFKRSGHESCLYIHRDG--GNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268          
BLAST of mRNA_H-akashiwo_Contig1161.2.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 292 bits (748), Expect = 2.350e-94
Identity = 142/217 (65.44%), Postives = 170/217 (78.34%), Query Frame = 1
Query:  289 LTLHDFLLQQNFVRSDYEYCLYIRRNPSTGEETMIAVYVDDLVISSSNPSIVSDLKRSFAPRFKITDLGSLNQILGIKVVRDRRSKCFFLSQASFAKDAITKFGLDFLPAVRTPMDHTADLAPTPGYVCSLPDSNRYRSMVGTLAWLANWTRPELAFAVHKLQKFQSNL*PKHFKAAERVFRYLKGTQSERLRLGGDLILRAYTDSDFCQDKQQGKS 939
            + LHD L    F RS +E CLYI R+   G E M+AVYVDDLVIS S+ ++VS+ K+S A ++ +TD G L QILGIKVVRD+R+KCF LSQ SF KDA+ KFGLD+LPA +TP+DHT DL PTPG+   L D+N YRSMVGTLAW+ANWTRPELAF VHKLQ+ Q N  PKHF+A +R FRYLKGTQSE LRLGGDL+LRA++DSDFC D+  GKS
Sbjct:    1 MELHDHLESLGFKRSGHESCLYIHRDG--GNELMVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKS 215          
BLAST of mRNA_H-akashiwo_Contig1161.2.1 vs. uniprot
Match: A0A7S3Y3C5_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3C5_HETAK)

HSP 1 Score: 286 bits (733), Expect = 4.420e-91
Identity = 140/178 (78.65%), Postives = 157/178 (88.20%), Query Frame = 1
Query:    1 ARLVAQGFTQRAGIDYHSTYAPVIAAPSLRLMLSIAANKGYDVDALDISTAFLNRDIDGDVNVKQPPGFVDKDHPHKV*KLRKSLYGLRQSPRIWYLTLHDFLLQQNFVRSDYEYCLYIRRNPSTGEETMIAVYVDDLVISSSNPSIVSDLKRSFAPRFKITDLGSLNQILGIKVVRD 534
            ARLVAQGFTQR G+D+ +TY+PV+AAPSLRLMLSIAANKG+ V+ALDISTAFLN DIDGDV VKQPPGFVDKDHPHKV KL+K+LYGLRQSPR+WY TLH+FLLQQNFVRSDYE CLY R+N  TGE+TM+AVYVDDLV+SS+ PS+VS LK SF  RF ITDLG L  ILGIKV RD
Sbjct:  250 ARLVAQGFTQREGVDFSATYSPVVAAPSLRLMLSIAANKGHAVEALDISTAFLNSDIDGDVYVKQPPGFVDKDHPHKVWKLKKALYGLRQSPRLWYNTLHEFLLQQNFVRSDYESCLYTRKNSVTGEDTMVAVYVDDLVLSSNIPSVVSSLKSSFVSRFSITDLGPLTSILGIKVSRD 427          
BLAST of mRNA_H-akashiwo_Contig1161.2.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 252 bits (643), Expect = 5.970e-73
Identity = 129/315 (40.95%), Postives = 209/315 (66.35%), Query Frame = 1
Query:    1 ARLVAQGFTQRAGIDYHSTYAPVIAAPSLRLMLSIAANKGYDVDALDISTAFLNRDIDGDVNVKQPPGFVDKDHPHKV*KLRKSLYGLRQSPRIWYLTLHDFLLQQNFVRSDYEYCLYIRRNPSTGEETMIAVYVDDLVISSSNPSIVSDLKRSFAPRFKITDLGSLNQILGIKVVRDRRSKCFFLSQASFAKDAITKFGLDFLPAVRTPMDHTAD--LAPTPGYVCSLPDSNRYRSMVGTLAWLANWTRPELAFAVHKLQKFQSNL*PKHFKAAERVFRYLKGTQSERLRLGGDLILRAYTDSDFCQDKQQGKS 939
            ARL AQG++Q  G+DY +T++PV+++ SLR +L+IAA++  ++  +DI TAFL+  ++ D+ +KQP G+      HKV KL+KSLYGL+Q+P+ WY  L+ FLLQQ + R+ Y+ C+Y + + STG +T+I+VYVDD+V++SS+ S +S +K++ +  + ++D+G +  ILGIKV RDR ++   LSQ SF ++A  KF +     V  P++   D  +        S  ++ ++RS+VGT+ WLA WT PE+A+++H L K  ++       A+  + RYL  T+ + + LGG L L AY D+DFC ++ +G+S
Sbjct:  549 ARLCAQGYSQIEGVDYTNTFSPVVSSASLRTVLTIAASEDMEIHCMDIKTAFLHGKLEEDIYMKQPEGYEVPGMEHKVLKLKKSLYGLKQAPKCWYQNLNGFLLQQGYTRNGYDSCVYSKVS-STGGKTLISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRS 862          
BLAST of mRNA_H-akashiwo_Contig1161.2.1 vs. uniprot
Match: H3H1B2_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H1B2_PHYRM)

HSP 1 Score: 232 bits (592), Expect = 2.310e-69
Identity = 125/319 (39.18%), Postives = 199/319 (62.38%), Query Frame = 1
Query:    1 ARLVAQGFTQRAGIDYHSTYAPVIAAPSLRLMLSIAANKGYDVDALDISTAFLNRDIDGDVNVKQPPGFVDKDHPHKV*KLRKSLYGLRQSPRIWYLTLHDFLLQQNFVRSDYEYCLYIRRNPSTGEETMIAVYVDDLVISSSNPSIVSDLKRSFAPRFKITDLGSLNQILGIKVVRDRRSKCFFLSQASFAKDAITKFGLDFLPAVRTPMDHTADLAPTPGYVCSLPDSNR----YRSMVGTLAWLANWTRPELAFAVHKLQKFQSNL*PKHFKAAERVFRYLKGTQSERLRLGGDLI--LRAYTDSDFCQDKQQGKS 939
            ARLVA+GF+Q+ GIDY  T+APV    S+R++LS+AA  G  +  +D+ TAFLN  +D D+ + QP G+VD+DHP  V KL++SLYGL+QSPR+W  T+ DF+L+  F + + ++C+Y++R+    +   +A+YVDDLV++SS+  ++ D K++ + RF++TD+G L   LG+++ +D  +    + Q  FAKD + KF +D    V+TP D    L           D       YR+ VG L +L   TRP+LA AV  L +F ++  P H++A +RVFRY++GT++  +         L+ Y+D+D+  D +  +S
Sbjct:   89 ARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRDGH--DMIFVALYVDDLVLASSSDKMLLDTKQALSHRFEMTDMGQLKYFLGMEIEQDVVTGKMSMRQTKFAKDILQKFSMDKSNPVKTPQDPGLKLTKAMCEGGCKHDETMVNVPYRNAVGCLMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIQGTKTHGIEFQASCHDGLQGYSDADWAGDIESRRS 405          
BLAST of mRNA_H-akashiwo_Contig1161.2.1 vs. uniprot
Match: H3H9M9_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9M9_PHYRM)

HSP 1 Score: 229 bits (584), Expect = 6.370e-66
Identity = 127/320 (39.69%), Postives = 198/320 (61.88%), Query Frame = 1
Query:    1 ARLVAQGFTQRAGIDYHSTYAPVIAAPSLRLMLSIAANKGYDVDALDISTAFLNRDIDGDVNVKQPPGFVDKDHPHKV*KLRKSLYGLRQSPRIWYLTLHDFLLQQNFVRSDYEYCLYIRRNPSTGEETM-IAVYVDDLVISSSNPSIVSDLKRSFAPRFKITDLGSLNQILGIKVVRDRRSKCFFLSQASFAKDAITKFGLDFLPAVRTPMDHTADLAPTPGYV-CSLPDSNR---YRSMVGTLAWLANWTRPELAFAVHKLQKFQSNL*PKHFKAAERVFRYLKGTQSERLRL--GGDLILRAYTDSDFCQDKQQGKS 939
            ARLVA+GF+Q+ GIDY  T+APV    S+R++LS+AA  G  +  +D+ TAFLN  +D D+ + QP G+VD+DHP  V KL++SLYGL+QSPR+W  T+ DF+L+  F + + ++C+Y++R+   G++ + +A+YVDDL+++SSN  ++   K + + RF++TDLG L   LG+++  D  S    + Q  F +  +TKFG+     V+TP D    L        C   D+ +   YRS VG L +L   TRP+LA AV  L +F ++  P H++A +RV RYL+ T +  L       L +  Y+D+D+  D +  +S
Sbjct:  395 ARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRD---GQDMIFVALYVDDLILASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLQFILTKFGMQDSKPVKTPQDPGLKLTKNMCEGGCQHEDTMKNVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFLREDSLGMCGYSDADWAGDIESRRS 711          
BLAST of mRNA_H-akashiwo_Contig1161.2.1 vs. uniprot
Match: H3H839_PHYRM (Integrase catalytic domain-containing protein n=4 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H839_PHYRM)

HSP 1 Score: 232 bits (591), Expect = 7.630e-66
Identity = 126/320 (39.38%), Postives = 202/320 (63.12%), Query Frame = 1
Query:    1 ARLVAQGFTQRAGIDYHSTYAPVIAAPSLRLMLSIAANKGYDVDALDISTAFLNRDIDGDVNVKQPPGFVDKDHPHKV*KLRKSLYGLRQSPRIWYLTLHDFLLQQNFVRSDYEYCLYIRRNPSTGEETM-IAVYVDDLVISSSNPSIVSDLKRSFAPRFKITDLGSLNQILGIKVVRDRRSKCFFLSQASFAKDAITKFGLDFLPAVRTPMDHTADLAPTPGYVCSLPDSNR----YRSMVGTLAWLANWTRPELAFAVHKLQKFQSNL*PKHFKAAERVFRYLKGTQSERLRLGGDLI--LRAYTDSDFCQDKQQGKS 939
            ARLVA+GF+Q+ GIDY  T+APV    S+R++LS+AA  G  +  +D+ TAFLN  +D D+ + QP G+VD+DHP  V KL++SLYGL+QSPR+W  T+ DF+L+  F + + ++C+Y++R+   G++ + +A+YVDDLV++SS+  ++ D K++ + RF++TD+G L   LG+++ +D  +    + Q  FAKD + KF +D    V+TP D    L           D       YR+ VG L +L   TRP+LA AV  L +F ++  P H++A +RVFRY++GT++  +         L+ Y+D+D+  D +  +S
Sbjct:  483 ARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRD---GQDMIFVALYVDDLVLASSSDKMLLDTKQALSHRFEMTDMGQLKYFLGMEIEQDVVTGKMSMRQTKFAKDILQKFSMDKSNPVKTPQDPGLKLTKAMCEGGCKHDETMVNVPYRNAVGCLMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIQGTKTHGIESQASCNDGLQGYSDADWAGDIESRRS 799          
BLAST of mRNA_H-akashiwo_Contig1161.2.1 vs. uniprot
Match: H3GB73_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB73_PHYRM)

HSP 1 Score: 220 bits (560), Expect = 1.010e-65
Identity = 116/290 (40.00%), Postives = 188/290 (64.83%), Query Frame = 1
Query:    1 ARLVAQGFTQRAGIDYHSTYAPVIAAPSLRLMLSIAANKGYDVDALDISTAFLNRDIDGDVNVKQPPGFVDKDHPHKV*KLRKSLYGLRQSPRIWYLTLHDFLLQQNFVRSDYEYCLYIRRNPSTGEETM-IAVYVDDLVISSSNPSIVSDLKRSFAPRFKITDLGSLNQILGIKVVRDRRSKCFFLSQASFAKDAITKFGLDFLPAVRTPMDHTADLAPTPGYVCSLPDSNR----YRSMVGTLAWLANWTRPELAFAVHKLQKFQSNL*PKHFKAAERVFRYLKGTQS 855
            ARLVA+GF+Q+ GIDY  T+APV    S+R++LS+AA  G  +  +D+ TAFL+  +D D+ + QP G+V++DHP  V KL++SLYGL+QSPR+W  T+ DF+L+  F + + ++C+Y++R+   G++ + +A+Y++D V++SS+  I+ D K++ + RF++TD+G L   LG+++ +D  +    + Q  FAKD + KF +D    V+TP D    L           D       YR+ VG L +L   TRP+LA AV  L +F ++  P H++A +RVFRY++GT++
Sbjct:   59 ARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLDGVLDEDIYMAQPDGYVNEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRD---GQDMIFVALYINDFVLASSSDKILLDTKQALSKRFEMTDMGQLKYFLGMEIEQDVVTGKMSMRQTKFAKDIMQKFSMDKSNPVKTPQDPGLKLTKAMCEGGCKHDETMVNVPYRNAVGCLMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIQGTKT 345          
BLAST of mRNA_H-akashiwo_Contig1161.2.1 vs. uniprot
Match: A0A4T9WAI5_9FIRM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Bacteria TaxID=2 RepID=A0A4T9WAI5_9FIRM)

HSP 1 Score: 224 bits (572), Expect = 2.540e-65
Identity = 124/319 (38.87%), Postives = 197/319 (61.76%), Query Frame = 1
Query:    1 ARLVAQGFTQRAGIDYHSTYAPVIAAPSLRLMLSIAANKGYDVDALDISTAFLNRDIDGDVNVKQPPGFVDKDHPHKV*KLRKSLYGLRQSPRIWYLTLHDFLLQQNFVRSDYEYCLYIRRNPSTGEETMIAVYVDDLVISSSNPSIVSDLKRSFAPRFKITDLGSLNQILGIKVVRDRRSKCFFLSQASFAKDAITKFGLDFLPAVRTPMDHTADLAPTPGYVCSLPDSNR----YRSMVGTLAWLANWTRPELAFAVHKLQKFQSNL*PKHFKAAERVFRYLKGTQSERL--RLGGDLILRAYTDSDFCQDKQQGKS 939
            ARLVA+GF+Q+ GIDY  T+APV    S+R++LS+AA     V  +D+ TAFLN  +D D+ + QP G+VD D P  V +L++SLYGL+QSPR+W  T+ +F+L+  F + + ++C+Y++R+    +   +A+YVDDLV++SS+  ++ D K++ + RF++TD+G L   LG+++ +D  +    + Q  FAKD + KF +D    V+TP D    L           D       YR+ VG L +L   TRP+LA AV  L +F ++  P H++A +RVFRY++GT++  L  +   +  L+ Y+D+D+  D    KS
Sbjct:  134 ARLVAKGFSQKYGIDYDETFAPVAKFTSIRVLLSLAAKYKLTVHQMDVKTAFLNGLLDEDIYMAQPDGYVDGDRPDYVCRLKRSLYGLKQSPRMWNKTIDEFMLKLGFKKCESDHCIYLKRD--NHDMMFVALYVDDLVLASSSDRMLKDTKQALSDRFEMTDMGQLKYFLGMEIEQDVATGKVSVRQTKFAKDILEKFKMDESNPVKTPQDPGLKLTKAMCEGGCKHDETMANVPYRNAVGCLMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIRGTKTHGLVFQASSEDGLQGYSDADWAGDLADRKS 450          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1161.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y3B6_HETAK8.050e-12176.19Hypothetical protein (Fragment) n=6 Tax=Heterosigm... [more]
A0A7S3Y6S2_HETAK1.830e-12064.55Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S4DD78_HETAK2.350e-9465.44Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y3C5_HETAK4.420e-9178.65Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y1P1_HETAK5.970e-7340.95Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
H3H1B2_PHYRM2.310e-6939.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H9M9_PHYRM6.370e-6639.69CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
H3H839_PHYRM7.630e-6639.38Integrase catalytic domain-containing protein n=4 ... [more]
H3GB73_PHYRM1.010e-6540.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4T9WAI5_9FIRM2.540e-6538.87Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1161contigH-akashiwo_Contig1161:99131..100069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35725.K2R444
PFAMsRVT_2,gag_pre-integrs,rve
Model size939
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.58e-20
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3QNZW@4890|Ascomycota,205S4@147541|Dothideomycetes
Descriptionretrotransposon
Cds size411
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387102.6417246-UTR-H-akashiwo_Contig1161:99130..992711681387102.6417246-UTR-H-akashiwo_Contig1161:99130..99271Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1161 99131..99271 -
1681387102.6655705-UTR-H-akashiwo_Contig1161:99682..1000691681387102.6655705-UTR-H-akashiwo_Contig1161:99682..100069Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1161 99683..100069 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387102.656977-CDS-H-akashiwo_Contig1161:99271..996821681387102.656977-CDS-H-akashiwo_Contig1161:99271..99682Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1161 99272..99682 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1161.2.1prot_H-akashiwo_Contig1161.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1161 99272..99682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1161.2.1

>prot_H-akashiwo_Contig1161.2.1 ID=prot_H-akashiwo_Contig1161.2.1|Name=mRNA_H-akashiwo_Contig1161.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=137bp
MIAVYVDDLVISSSNPSIVSDLKRSFAPRFKITDLGSLNQILGIKVVRDR
RSKCFFLSQASFAKDAITKFGLDFLPAVRTPMDHTADLAPTPGYVCSLPD
SNRYRSMVGTLAWLANWTRPELAFAVHKLQKFQSNL*
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mRNA from alignment at H-akashiwo_Contig1161:99131..100069-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1161.2.1 ID=mRNA_H-akashiwo_Contig1161.2.1|Name=mRNA_H-akashiwo_Contig1161.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=939bp|location=Sequence derived from alignment at H-akashiwo_Contig1161:99131..100069- (Heterosigma akashiwo CCMP452)
GCAAGGCTAGTTGCGCAGGGTTTCACCCAGCGTGCAGGAATCGACTATCA TAGTACCTATGCTCCCGTCATAGCGGCCCCTAGTTTGCGTCTTATGCTCT CTATCGCTGCTAACAAGGGCTATGATGTTGATGCTCTTGACATCTCTACA GCTTTCCTGAATAGGGACATAGATGGGGACGTGAACGTCAAGCAGCCTCC TGGTTTCGTAGATAAGGATCATCCTCATAAAGTCTGAAAGCTGCGTAAGT CCCTCTATGGGTTGCGCCAAAGCCCACGCATCTGGTACCTTACCCTGCAT GATTTTCTTCTTCAGCAAAATTTTGTTCGCAGTGATTACGAATACTGCCT CTACATTCGCAGAAATCCCTCCACTGGTGAGGAGACGATGATCGCTGTTT ACGTTGACGATCTAGTCATAAGTAGCAGTAATCCATCTATTGTCAGTGAT CTCAAGCGTTCTTTTGCACCTCGATTCAAGATCACAGATCTCGGTTCTCT CAATCAAATTCTGGGCATCAAAGTGGTCAGGGATCGTCGCAGTAAGTGTT TCTTCCTGAGCCAAGCTTCTTTCGCTAAGGATGCCATCACTAAGTTTGGT TTAGATTTCCTTCCAGCTGTTCGCACTCCAATGGATCACACAGCTGATCT GGCCCCTACACCTGGGTATGTCTGTTCATTGCCAGATTCGAACAGGTACC GTTCCATGGTTGGGACTTTGGCATGGCTGGCTAACTGGACCAGGCCCGAG CTCGCCTTCGCTGTGCACAAGCTTCAGAAGTTTCAGAGTAACCTTTAGCC TAAGCACTTCAAGGCCGCTGAGCGTGTTTTTCGATATCTCAAGGGCACCC AGTCTGAACGGCTGCGCCTTGGTGGGGATCTTATTCTTCGAGCCTACACT GACTCTGATTTTTGCCAAGACAAACAGCAAGGCAAGTCA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1161:99131..100069-

>mRNA_H-akashiwo_Contig1161.2.1 ID=mRNA_H-akashiwo_Contig1161.2.1|Name=mRNA_H-akashiwo_Contig1161.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=411bp|location=Sequence derived from alignment at H-akashiwo_Contig1161:99131..100069- (Heterosigma akashiwo CCMP452)
ATGATCGCTGTTTACGTTGACGATCTAGTCATAAGTAGCAGTAATCCATC
TATTGTCAGTGATCTCAAGCGTTCTTTTGCACCTCGATTCAAGATCACAG
ATCTCGGTTCTCTCAATCAAATTCTGGGCATCAAAGTGGTCAGGGATCGT
CGCAGTAAGTGTTTCTTCCTGAGCCAAGCTTCTTTCGCTAAGGATGCCAT
CACTAAGTTTGGTTTAGATTTCCTTCCAGCTGTTCGCACTCCAATGGATC
ACACAGCTGATCTGGCCCCTACACCTGGGTATGTCTGTTCATTGCCAGAT
TCGAACAGGTACCGTTCCATGGTTGGGACTTTGGCATGGCTGGCTAACTG
GACCAGGCCCGAGCTCGCCTTCGCTGTGCACAAGCTTCAGAAGTTTCAGA
GTAACCTTTAG
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