mRNA_H-akashiwo_Contig116.22.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig116.22.1
Unique NamemRNA_H-akashiwo_Contig116.22.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig116.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig116contigH-akashiwo_Contig116:1210606..1211119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size514
Hectar predicted targeting categorysignal anchor
Exons1
Cds size465
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387102.514177-UTR-H-akashiwo_Contig116:1210605..12106181681387102.514177-UTR-H-akashiwo_Contig116:1210605..1210618Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig116 1210606..1210618 +
1681387102.5302682-UTR-H-akashiwo_Contig116:1211083..12111191681387102.5302682-UTR-H-akashiwo_Contig116:1211083..1211119Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig116 1211084..1211119 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387102.5224206-CDS-H-akashiwo_Contig116:1210618..12110831681387102.5224206-CDS-H-akashiwo_Contig116:1210618..1211083Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig116 1210619..1211083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig116.22.1prot_H-akashiwo_Contig116.22.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig116 1210619..1211083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig116.22.1

>prot_H-akashiwo_Contig116.22.1 ID=prot_H-akashiwo_Contig116.22.1|Name=mRNA_H-akashiwo_Contig116.22.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=155bp
MHSPLLPLPRTDTTTDKQREKTERIKMARWQNNVAALMVAVYAVAFLAIM
FRTSIRFPLTDFATDDNNWLSSWFYTTLVDYYGVAISLCVIIFNVEKPFR
AALWSFGVLFLGCWVACGWIFYRLKFKAGFGMVSHRDVRKLEPAAQPIVV
QGSN*
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mRNA from alignment at H-akashiwo_Contig116:1210606..1211119+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig116.22.1 ID=mRNA_H-akashiwo_Contig116.22.1|Name=mRNA_H-akashiwo_Contig116.22.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=514bp|location=Sequence derived from alignment at H-akashiwo_Contig116:1210606..1211119+ (Heterosigma akashiwo CCMP452)
ATCAGCGGCAGCAATGCACTCACCATTACTACCTCTCCCTCGAACTGATA
CTACCACAGATAAACAGAGAGAGAAAACGGAAAGGATAAAGATGGCAAGG
TGGCAAAATAATGTCGCTGCTCTCATGGTTGCAGTGTATGCAGTAGCCTT
TCTCGCCATTATGTTTCGAACTTCTATTCGTTTTCCCCTCACTGACTTTG
CGACGGATGACAACAACTGGTTGAGCAGCTGGTTCTACACAACATTGGTT
GACTACTATGGAGTGGCAATATCATTATGTGTGATAATTTTCAATGTTGA
AAAGCCATTCCGTGCGGCCCTATGGAGCTTTGGGGTACTTTTTCTTGGTT
GCTGGGTCGCCTGTGGTTGGATCTTTTACCGCTTGAAGTTTAAAGCTGGC
TTTGGAATGGTTTCTCATCGCGATGTAAGAAAGCTCGAGCCAGCTGCTCA
ACCAATCGTTGTCCAAGGTTCAAATTAACAAGCATATTTATGACAGCAGC
CTCCAAAGCAGCAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig116:1210606..1211119+

>mRNA_H-akashiwo_Contig116.22.1 ID=mRNA_H-akashiwo_Contig116.22.1|Name=mRNA_H-akashiwo_Contig116.22.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=465bp|location=Sequence derived from alignment at H-akashiwo_Contig116:1210606..1211119+ (Heterosigma akashiwo CCMP452)
ATGCACTCACCATTACTACCTCTCCCTCGAACTGATACTACCACAGATAA
ACAGAGAGAGAAAACGGAAAGGATAAAGATGGCAAGGTGGCAAAATAATG
TCGCTGCTCTCATGGTTGCAGTGTATGCAGTAGCCTTTCTCGCCATTATG
TTTCGAACTTCTATTCGTTTTCCCCTCACTGACTTTGCGACGGATGACAA
CAACTGGTTGAGCAGCTGGTTCTACACAACATTGGTTGACTACTATGGAG
TGGCAATATCATTATGTGTGATAATTTTCAATGTTGAAAAGCCATTCCGT
GCGGCCCTATGGAGCTTTGGGGTACTTTTTCTTGGTTGCTGGGTCGCCTG
TGGTTGGATCTTTTACCGCTTGAAGTTTAAAGCTGGCTTTGGAATGGTTT
CTCATCGCGATGTAAGAAAGCTCGAGCCAGCTGCTCAACCAATCGTTGTC
CAAGGTTCAAATTAA
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