mRNA_H-akashiwo_Contig116.16.1 (mRNA) Heterosigma akashiwo CCMP452
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Overview
Homology
BLAST of mRNA_H-akashiwo_Contig116.16.1 vs. uniprot
Match: UPI0019E90B6C (Response regulator transcription factor n=1 Tax=Synechococcales cyanobacterium M55_K2018_004 TaxID=2774347 RepID=UPI0019E90B6C) HSP 1 Score: 196 bits (498), Expect = 1.870e-59 Identity = 109/230 (47.39%), Postives = 157/230 (68.26%), Query Frame = 1
Query: 25 EVLLVDDDESILKSVSRYLAGRGVVVTTAASAKEAWVHLQTAPRLPDVLITDINMPGVDGYQLVQKLRSRIEYAALPIVFLSARGMTPDRIQGFRSGGQAYITKPFDPEELISLIDSL----AATKRRMEDPK--GIVSMRDELAKVRQALVESTSLRSAPKNDGIPPPSLTKREQSVLDRLAEGMTNKEIAQDLDLSLRYVEKVVERMFEKTQTSNRTKLVRYAVENGM 696
++LLVDD+ + ++V YL G V TA++A++ W LQ + LPD++ITDI MP VDGYQ ++++R + LP++FL+ARGMT DRIQG+ +G AY+ KPFDPEEL+++++SL AA R D + I M ++A++R L + S+ P I LT REQSVL+R+AEG+ NKEIA+ LD S+R VEK V R+F KT T++RT+LVRYA+E+G+
Sbjct: 4 QILLVDDEPGLRQAVQAYLEDSGFTVQTASNARDGWDLLQQS--LPDLVITDIMMPQVDGYQFLKQMRDDPRFETLPVIFLTARGMTSDRIQGYTAGCDAYLPKPFDPEELVAIVNSLLERRAALNRAASDSETPDIAEMARQIAEIRAMLNQRGSIAQTPAPIKI---DLTPREQSVLERVAEGLMNKEIARQLDTSVRNVEKYVSRLFSKTGTNSRTELVRYALEHGL 228
BLAST of mRNA_H-akashiwo_Contig116.16.1 vs. uniprot
Match: UPI0008F98EE2 (response regulator transcription factor n=1 Tax=Geitlerinema sp. PCC 9228 TaxID=111611 RepID=UPI0008F98EE2) HSP 1 Score: 196 bits (498), Expect = 1.930e-59 Identity = 105/234 (44.87%), Postives = 159/234 (67.95%), Query Frame = 1
Query: 22 TEVLLVDDDESILKSVSRYLAGRGVVVTTAASAKEAWVHLQTAPRLPDVLITDINMPGVDGYQLVQKLRSRIEYAALPIVFLSARGMTPDRIQGFRSGGQAYITKPFDPEELISLIDSLAATKRRMEDPKG-------IVSMRDELAKVRQALVESTSLRSAPKNDGIPPPSLTKREQSVLDRLAEGMTNKEIAQDLDLSLRYVEKVVERMFEKTQTSNRTKLVRYAVENGMVS 702
++VLLVDD+ +L++V YL G+ V A++A E W LQ +P PD++I+DI MP VDGYQ +Q++R Y LP+VFL+ARGMT DRI G+++G AYI+KPFDPEEL++++++L + ++ +E+ K I + ++A+++ L + + + LT REQS+LD +A+GM NKEIA+ LD S+R VEK V R+F KT T++RT+LVRYA+E+G+ S
Sbjct: 3 SKVLLVDDEPGLLEAVQAYLEDSGLEVEVASNANEGWEKLQQSP--PDLVISDIMMPQVDGYQFLQQIREDPRYKTLPVVFLTARGMTGDRIAGYQAGIDAYISKPFDPEELVAMVNNLLSRRQVLEEEKAESGENLNITELASQIAEIKSLLTQRHEISQTAAPIQV---ELTPREQSILDLVAKGMMNKEIAKHLDTSVRNVEKYVSRLFTKTGTTSRTELVRYALEHGLTS 231
BLAST of mRNA_H-akashiwo_Contig116.16.1 vs. uniprot
Match: A0A1Z3HQF6_9CYAN (DNA-binding response regulator n=1 Tax=Halomicronema hongdechloris C2206 TaxID=1641165 RepID=A0A1Z3HQF6_9CYAN) HSP 1 Score: 194 bits (493), Expect = 1.130e-58 Identity = 108/230 (46.96%), Postives = 153/230 (66.52%), Query Frame = 1
Query: 28 VLLVDDDESILKSVSRYLAGRGVVVTTAASAKEAWVHLQTAPRLPDVLITDINMPGVDGYQLVQKLRSRIEYAALPIVFLSARGMTPDRIQGFRSGGQAYITKPFDPEELISLIDSL----AATKRRMEDPKGIVSMRDELAKVRQALVESTSLRSAPKNDGIPPPSLTKREQSVLDRLAEGMTNKEIAQDLDLSLRYVEKVVERMFEKTQTSNRTKLVRYAVENGMVSS 705
VLLVDD+ + ++V YL G V A++A+E W LQ R+PDVLI+DI MP VDGYQ + ++R + LP+VFL+ARGMT DRIQG+ +G AY+ KPFDPEEL++++ +L A P + +M ++ ++R L + S+ +P I LT REQSVLD +AEG+ NKEIA+ LD S+R VEK V R+F KT T++RT+LVRYA+E+G++S+
Sbjct: 8 VLLVDDEPGLREAVQAYLEDSGFSVEVASNAQEGWQRLQE--RMPDVLISDIMMPQVDGYQFLAQVREDPRFKGLPVVFLTARGMTSDRIQGYNAGCDAYLPKPFDPEELVAIVGNLMQRRVAQSPEAGTPPDMATMARQIEEIRALLSQKGSVSQSPTPIRI---DLTPREQSVLDLVAEGLMNKEIARRLDTSVRNVEKYVSRLFSKTGTNSRTELVRYALEHGLIST 232
BLAST of mRNA_H-akashiwo_Contig116.16.1 vs. uniprot
Match: A0A6L9ZXF7_9CYAN (Response regulator transcription factor n=18 Tax=Oscillatoriales TaxID=1150 RepID=A0A6L9ZXF7_9CYAN) HSP 1 Score: 193 bits (490), Expect = 5.080e-58 Identity = 108/234 (46.15%), Postives = 158/234 (67.52%), Query Frame = 1
Query: 13 SGKTEVLLVDDDESILKSVSRYLAGRGVVVTTAASAKEAWVHLQTAPRLPDVLITDINMPGVDGYQLVQKLRSRIEYAALPIVFLSARGMTPDRIQGFRSGGQAYITKPFDPEELISLIDSL------AATKRRMEDPKGIVSMRDELAKVRQALVESTSLRSAPKNDGIPPPSLTKREQSVLDRLAEGMTNKEIAQDLDLSLRYVEKVVERMFEKTQTSNRTKLVRYAVENGM 696
SGK +LLVDD+ + ++V YL G V A++A + W LQ+ LPD++ITDI MP +DGYQ +QKLR + ALP+VFL+A+GMT DRIQG+++G AY++KPFDPEEL++++++L A T E+ I + ++A+++ L+ ++ P I LT REQSVLD +A G+ NKEIA+DL+ S+R VEK V R+F KT T++RT+LVRYA+E+G+
Sbjct: 19 SGK--ILLVDDEPGLREAVQVYLEDSGFNVNVASNANDGWDILQS--YLPDLVITDIMMPQIDGYQFLQKLREDPRFKALPVVFLTAKGMTTDRIQGYQAGCDAYLSKPFDPEELVAIVENLLERRMVAKTTNEGENTSDIAVLASQIAEIKAMLMGKNTIAQTPSPIKI---DLTPREQSVLDLVARGLMNKEIARDLNTSVRNVEKYVSRLFTKTGTNSRTELVRYALEHGL 245
BLAST of mRNA_H-akashiwo_Contig116.16.1 vs. uniprot
Match: UPI0019F240D4 (Response regulator transcription factor n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI0019F240D4) HSP 1 Score: 190 bits (483), Expect = 3.900e-57 Identity = 107/236 (45.34%), Postives = 155/236 (65.68%), Query Frame = 1
Query: 7 MSSGKTEVLLVDDDESILKSVSRYLAGRGVVVTTAASAKEAWVHLQTAPRLPDVLITDINMPGVDGYQLVQKLRSRIEYAALPIVFLSARGMTPDRIQGFRSGGQAYITKPFDPEELISLIDSLAA--TKRRME--DPKGIVSMRDELAKVRQALVESTSLRSAPKNDGIPPPSLTKREQSVLDRLAEGMTNKEIAQDLDLSLRYVEKVVERMFEKTQTSNRTKLVRYAVENGMVS 702
MS +LLVDD+ + ++V YL G V TA++A E W LQ + +PDVLI+D+ MP VDGYQ ++++R Y ALP+VFL+ARGMT DRIQG+ +G AY+ KPFDPEEL++++ +L T R E D I +M ++ +++ L + S+ P I T REQ VL+++AEG+ NKEIA L+ S+R VEK V R+F KT T++RT+LVRYA+E+G+++
Sbjct: 1 MSETTGRILLVDDEPGLREAVQAYLEDSGFEVETASNATEGWGKLQVS--MPDVLISDVMMPQVDGYQFLKQVREDARYQALPVVFLTARGMTSDRIQGYNAGVDAYLPKPFDPEELVAIVTNLIERKTSRVAEGGDVPDIAAMARQIEEIKALLTQRGSIAKTPAPIRI---DFTPREQDVLNKVAEGLMNKEIASRLETSVRNVEKYVSRLFSKTGTNSRTELVRYALEHGLIT 231
BLAST of mRNA_H-akashiwo_Contig116.16.1 vs. uniprot
Match: A0A2T2RFG1_9CYAN (DNA-binding response regulator n=1 Tax=Cyanobacteria bacterium SW_9_44_58 TaxID=1919144 RepID=A0A2T2RFG1_9CYAN) HSP 1 Score: 190 bits (482), Expect = 5.520e-57 Identity = 100/232 (43.10%), Postives = 158/232 (68.10%), Query Frame = 1
Query: 22 TEVLLVDDDESILKSVSRYLAGRGVVVTTAASAKEAWVHLQTAPRLPDVLITDINMPGVDGYQLVQKLRSRIEYAALPIVFLSARGMTPDRIQGFRSGGQAYITKPFDPEELISLIDSLAATKRRM----EDPKGIVSMRDELAKVRQALVESTSLRSAPKNDGIPPPSLTKREQSVLDRLAEGMTNKEIAQDLDLSLRYVEKVVERMFEKTQTSNRTKLVRYAVENGMVSS 705
T++LLVDD + ++V YL G ++ A++A E W +Q P PD++ITDI MP VDGYQ ++KLR+ Y LP+VFL+A+GMT DRI+G+ SG AY++KPFDPEEL++++ +L + + + E + ++ ++A+++ L E ++++ P I LT REQS+L+ +AEG+ NKEIA+ L+ S+R VEK V R+F KT T++RT+LVR+A+++G+ S
Sbjct: 7 TKLLLVDDKPGLREAVEAYLEDEGFIIQVASNANEGWELIQQQP--PDLVITDIMMPQVDGYQFLEKLRNDPRYKGLPVVFLTAKGMTADRIKGYESGCDAYLSKPFDPEELVAIVKNLLSRRETVSQSGEQNANLDAISQQIAEIKTLLGEQGNVKTTPSPIKI---DLTPREQSILNLVAEGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALQHGLTES 233
BLAST of mRNA_H-akashiwo_Contig116.16.1 vs. uniprot
Match: A0A8J6UT91_9CYAN (Response regulator transcription factor n=3 Tax=unclassified Trichocoleus TaxID=2628910 RepID=A0A8J6UT91_9CYAN) HSP 1 Score: 189 bits (481), Expect = 6.700e-57 Identity = 103/229 (44.98%), Postives = 155/229 (67.69%), Query Frame = 1
Query: 25 EVLLVDDDESILKSVSRYLAGRGVVVTTAASAKEAWVHLQTAPRLPDVLITDINMPGVDGYQLVQKLRSRIEYAALPIVFLSARGMTPDRIQGFRSGGQAYITKPFDPEELISLIDSLAATKRRM---EDPK--GIVSMRDELAKVRQALVESTSLRSAPKNDGIPPPSLTKREQSVLDRLAEGMTNKEIAQDLDLSLRYVEKVVERMFEKTQTSNRTKLVRYAVENGM 696
+VLLVDD+ + ++V YL G V A +A+E W LQ +LPD++I+D+ MP VDGYQ ++++R + ALP+VFL+ARGMT DRIQG+++G AY+ KPFDP+EL++++++L + ED + I M ++A+++ L + ++ + P P T REQSVLD +AEG+ NKEIA+ LD S+R VEK V R+F KT T++RT+LVRYA+E+G+
Sbjct: 4 QVLLVDDEPGLREAVQAYLEDSGFAVDVAGNAQEGWQLLQQ--KLPDLVISDVMMPQVDGYQFLKQMREDARFKALPVVFLTARGMTSDRIQGYQAGCDAYLPKPFDPDELVAIVENLLGRRTARAGTEDGETPDIADMARQIAEIKALLTQRNAISATPAPI---PVDFTPREQSVLDLVAEGLMNKEIARRLDTSVRNVEKYVSRLFSKTGTNSRTELVRYALEHGL 227
BLAST of mRNA_H-akashiwo_Contig116.16.1 vs. uniprot
Match: A0A846AFD1_9CYAN (Response regulator transcription factor (Fragment) n=1 Tax=Leptolyngbya sp. SIO4C5 TaxID=2607774 RepID=A0A846AFD1_9CYAN) HSP 1 Score: 189 bits (481), Expect = 7.350e-57 Identity = 104/236 (44.07%), Postives = 154/236 (65.25%), Query Frame = 1
Query: 1 SEMSSGKTEVLLVDDDESILKSVSRYLAGRGVVVTTAASAKEAWVHLQTAPRLPDVLITDINMPGVDGYQLVQKLRSRIEYAALPIVFLSARGMTPDRIQGFRSGGQAYITKPFDPEELISLIDSLAATKRRMEDPKG----IVSMRDELAKVRQALVESTSLRSAPKNDGIPPPSLTKREQSVLDRLAEGMTNKEIAQDLDLSLRYVEKVVERMFEKTQTSNRTKLVRYAVENGM 696
+E S +LLVDD+ + ++V YL G V A++AKE W LQ + PDVLI+D+ MP VDG++ ++++R + + +LP+VFL+ARGMT DRIQG+ +G AYI KPFDPEEL++++ +L + G I +M ++ +++ L + S+ P I LT REQSVLD +AEG+ NKEIA+ L+ S+R VEK V R+F KT T++RT+LVRYA+E+G+
Sbjct: 2 AEQSEQPGNILLVDDEPGLREAVQAYLEDSGFNVEVASNAKEGWEKLQQST--PDVLISDVMMPQVDGFEFLKQVREDVRFQSLPVVFLTARGMTSDRIQGYNAGVDAYIPKPFDPEELVAVVSNLKGRRTTQSQASGDVPDIAAMARQIEEIKALLTQRGSIAQTPAPIRI---DLTPREQSVLDLVAEGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRYALEHGL 232
BLAST of mRNA_H-akashiwo_Contig116.16.1 vs. uniprot
Match: A0A1J1LUT5_9CYAN (Putative transcriptional regulator ycf29 n=14 Tax=Oscillatoriales TaxID=1150 RepID=A0A1J1LUT5_9CYAN) HSP 1 Score: 190 bits (482), Expect = 7.710e-57 Identity = 104/237 (43.88%), Postives = 156/237 (65.82%), Query Frame = 1
Query: 1 SEMSSGKTEVLLVDDDESILKSVSRYLAGRGVVVTTAASAKEAWVHLQTAPRLPDVLITDINMPGVDGYQLVQKLRSRIEYAALPIVFLSARGMTPDRIQGFRSGGQAYITKPFDPEELISLIDSLAATKRRMEDPKG-----IVSMRDELAKVRQALVESTSLRSAPKNDGIPPPSLTKREQSVLDRLAEGMTNKEIAQDLDLSLRYVEKVVERMFEKTQTSNRTKLVRYAVENGM 696
+E+S +LLVDD+ + ++V YL V A++AK+ W LQ LPD++ITDI MPGVDGYQ +Q++R + ALP+VFL+A+GM DRIQG+++G AY++KPFDPEEL+ ++ +L A + + G I ++ ++A++ L + + P I LT REQSVLD +A+G+ NKEIA++L+ S+R VEK V R+F KT T++RT+LVRYA+E+G+
Sbjct: 12 AEVSQVPARLLLVDDEPGLREAVQAYLEDSNFTVDVASNAKQGWELLQQ--NLPDLVITDIMMPGVDGYQFLQQMREDPRFKALPVVFLTAKGMKSDRIQGYQAGCDAYLSKPFDPEELVVIVKNLLARQAALRSSTGDGNPDIATLAGQIARIENMLKGKSGIHQTPAPIKI---DLTPREQSVLDLVAKGLMNKEIARNLETSVRNVEKYVSRLFTKTGTNSRTELVRYALEHGL 243
BLAST of mRNA_H-akashiwo_Contig116.16.1 vs. uniprot
Match: A0A2P8WFP9_9CYAN (DNA-binding response regulator n=1 Tax=filamentous cyanobacterium CCP5 TaxID=2107701 RepID=A0A2P8WFP9_9CYAN) HSP 1 Score: 189 bits (480), Expect = 1.040e-56 Identity = 109/239 (45.61%), Postives = 154/239 (64.44%), Query Frame = 1
Query: 7 MSSGKTEVLLVDDDESILKSVSRYLAGRGVVVTTAASAKEAWVHLQTAPRLPDVLITDINMPGVDGYQLVQKLRSRIEYAALPIVFLSARGMTPDRIQGFRSGGQAYITKPFDPEELISLIDSLAATKRRMEDPKG------IVSMRDELAKVRQALVESTSLRSAPKNDGIPPPSLTKREQSVLDRLAEGMTNKEIAQDLDLSLRYVEKVVERMFEKTQTSNRTKLVRYAVENGMVSS 705
MS +LLVDD+ + ++V YL G V A++A+E W LQ + PDVLI+DI MP VDGYQ +Q++R + LP+VFL+ARGMT DRIQG+ +G AY+ KPFDPEEL++++ +L +RR G I M ++ +++ L + S+ P I LT REQSVLD +AEG+ NKEIA LD S+R VEK V R+F KT T++RT+LVR+A+E+G+V++
Sbjct: 1 MSEQTGHILLVDDEPGLREAVQAYLEDSGFTVEAASNAQEGWDLLQQ--KTPDVLISDIMMPQVDGYQFLQQVRDDARFKGLPVVFLTARGMTSDRIQGYTAGCDAYLPKPFDPEELVAIVTNLI--ERRNAQAPGTSGTPDIAMMARQIEEIKAMLTQRGSVNKTPSPIRI---DLTPREQSVLDLVAEGLMNKEIASRLDTSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGLVTT 232 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig116.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig116.16.1 >prot_H-akashiwo_Contig116.16.1 ID=prot_H-akashiwo_Contig116.16.1|Name=mRNA_H-akashiwo_Contig116.16.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=234bp MSSGKTEVLLVDDDESILKSVSRYLAGRGVVVTTAASAKEAWVHLQTAPRback to top mRNA from alignment at H-akashiwo_Contig116:646124..646831- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig116.16.1 ID=mRNA_H-akashiwo_Contig116.16.1|Name=mRNA_H-akashiwo_Contig116.16.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=708bp|location=Sequence derived from alignment at H-akashiwo_Contig116:646124..646831- (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig116:646124..646831- >mRNA_H-akashiwo_Contig116.16.1 ID=mRNA_H-akashiwo_Contig116.16.1|Name=mRNA_H-akashiwo_Contig116.16.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=702bp|location=Sequence derived from alignment at H-akashiwo_Contig116:646124..646831- (Heterosigma akashiwo CCMP452)back to top |