mRNA_H-akashiwo_Contig116.16.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig116.16.1
Unique NamemRNA_H-akashiwo_Contig116.16.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig116.16.1 vs. uniprot
Match: UPI0019E90B6C (Response regulator transcription factor n=1 Tax=Synechococcales cyanobacterium M55_K2018_004 TaxID=2774347 RepID=UPI0019E90B6C)

HSP 1 Score: 196 bits (498), Expect = 1.870e-59
Identity = 109/230 (47.39%), Postives = 157/230 (68.26%), Query Frame = 1
Query:   25 EVLLVDDDESILKSVSRYLAGRGVVVTTAASAKEAWVHLQTAPRLPDVLITDINMPGVDGYQLVQKLRSRIEYAALPIVFLSARGMTPDRIQGFRSGGQAYITKPFDPEELISLIDSL----AATKRRMEDPK--GIVSMRDELAKVRQALVESTSLRSAPKNDGIPPPSLTKREQSVLDRLAEGMTNKEIAQDLDLSLRYVEKVVERMFEKTQTSNRTKLVRYAVENGM 696
            ++LLVDD+  + ++V  YL   G  V TA++A++ W  LQ +  LPD++ITDI MP VDGYQ ++++R    +  LP++FL+ARGMT DRIQG+ +G  AY+ KPFDPEEL+++++SL    AA  R   D +   I  M  ++A++R  L +  S+   P    I    LT REQSVL+R+AEG+ NKEIA+ LD S+R VEK V R+F KT T++RT+LVRYA+E+G+
Sbjct:    4 QILLVDDEPGLRQAVQAYLEDSGFTVQTASNARDGWDLLQQS--LPDLVITDIMMPQVDGYQFLKQMRDDPRFETLPVIFLTARGMTSDRIQGYTAGCDAYLPKPFDPEELVAIVNSLLERRAALNRAASDSETPDIAEMARQIAEIRAMLNQRGSIAQTPAPIKI---DLTPREQSVLERVAEGLMNKEIARQLDTSVRNVEKYVSRLFSKTGTNSRTELVRYALEHGL 228          
BLAST of mRNA_H-akashiwo_Contig116.16.1 vs. uniprot
Match: UPI0008F98EE2 (response regulator transcription factor n=1 Tax=Geitlerinema sp. PCC 9228 TaxID=111611 RepID=UPI0008F98EE2)

HSP 1 Score: 196 bits (498), Expect = 1.930e-59
Identity = 105/234 (44.87%), Postives = 159/234 (67.95%), Query Frame = 1
Query:   22 TEVLLVDDDESILKSVSRYLAGRGVVVTTAASAKEAWVHLQTAPRLPDVLITDINMPGVDGYQLVQKLRSRIEYAALPIVFLSARGMTPDRIQGFRSGGQAYITKPFDPEELISLIDSLAATKRRMEDPKG-------IVSMRDELAKVRQALVESTSLRSAPKNDGIPPPSLTKREQSVLDRLAEGMTNKEIAQDLDLSLRYVEKVVERMFEKTQTSNRTKLVRYAVENGMVS 702
            ++VLLVDD+  +L++V  YL   G+ V  A++A E W  LQ +P  PD++I+DI MP VDGYQ +Q++R    Y  LP+VFL+ARGMT DRI G+++G  AYI+KPFDPEEL++++++L + ++ +E+ K        I  +  ++A+++  L +   +        +    LT REQS+LD +A+GM NKEIA+ LD S+R VEK V R+F KT T++RT+LVRYA+E+G+ S
Sbjct:    3 SKVLLVDDEPGLLEAVQAYLEDSGLEVEVASNANEGWEKLQQSP--PDLVISDIMMPQVDGYQFLQQIREDPRYKTLPVVFLTARGMTGDRIAGYQAGIDAYISKPFDPEELVAMVNNLLSRRQVLEEEKAESGENLNITELASQIAEIKSLLTQRHEISQTAAPIQV---ELTPREQSILDLVAKGMMNKEIAKHLDTSVRNVEKYVSRLFTKTGTTSRTELVRYALEHGLTS 231          
BLAST of mRNA_H-akashiwo_Contig116.16.1 vs. uniprot
Match: A0A1Z3HQF6_9CYAN (DNA-binding response regulator n=1 Tax=Halomicronema hongdechloris C2206 TaxID=1641165 RepID=A0A1Z3HQF6_9CYAN)

HSP 1 Score: 194 bits (493), Expect = 1.130e-58
Identity = 108/230 (46.96%), Postives = 153/230 (66.52%), Query Frame = 1
Query:   28 VLLVDDDESILKSVSRYLAGRGVVVTTAASAKEAWVHLQTAPRLPDVLITDINMPGVDGYQLVQKLRSRIEYAALPIVFLSARGMTPDRIQGFRSGGQAYITKPFDPEELISLIDSL----AATKRRMEDPKGIVSMRDELAKVRQALVESTSLRSAPKNDGIPPPSLTKREQSVLDRLAEGMTNKEIAQDLDLSLRYVEKVVERMFEKTQTSNRTKLVRYAVENGMVSS 705
            VLLVDD+  + ++V  YL   G  V  A++A+E W  LQ   R+PDVLI+DI MP VDGYQ + ++R    +  LP+VFL+ARGMT DRIQG+ +G  AY+ KPFDPEEL++++ +L     A       P  + +M  ++ ++R  L +  S+  +P    I    LT REQSVLD +AEG+ NKEIA+ LD S+R VEK V R+F KT T++RT+LVRYA+E+G++S+
Sbjct:    8 VLLVDDEPGLREAVQAYLEDSGFSVEVASNAQEGWQRLQE--RMPDVLISDIMMPQVDGYQFLAQVREDPRFKGLPVVFLTARGMTSDRIQGYNAGCDAYLPKPFDPEELVAIVGNLMQRRVAQSPEAGTPPDMATMARQIEEIRALLSQKGSVSQSPTPIRI---DLTPREQSVLDLVAEGLMNKEIARRLDTSVRNVEKYVSRLFSKTGTNSRTELVRYALEHGLIST 232          
BLAST of mRNA_H-akashiwo_Contig116.16.1 vs. uniprot
Match: A0A6L9ZXF7_9CYAN (Response regulator transcription factor n=18 Tax=Oscillatoriales TaxID=1150 RepID=A0A6L9ZXF7_9CYAN)

HSP 1 Score: 193 bits (490), Expect = 5.080e-58
Identity = 108/234 (46.15%), Postives = 158/234 (67.52%), Query Frame = 1
Query:   13 SGKTEVLLVDDDESILKSVSRYLAGRGVVVTTAASAKEAWVHLQTAPRLPDVLITDINMPGVDGYQLVQKLRSRIEYAALPIVFLSARGMTPDRIQGFRSGGQAYITKPFDPEELISLIDSL------AATKRRMEDPKGIVSMRDELAKVRQALVESTSLRSAPKNDGIPPPSLTKREQSVLDRLAEGMTNKEIAQDLDLSLRYVEKVVERMFEKTQTSNRTKLVRYAVENGM 696
            SGK  +LLVDD+  + ++V  YL   G  V  A++A + W  LQ+   LPD++ITDI MP +DGYQ +QKLR    + ALP+VFL+A+GMT DRIQG+++G  AY++KPFDPEEL++++++L      A T    E+   I  +  ++A+++  L+   ++   P    I    LT REQSVLD +A G+ NKEIA+DL+ S+R VEK V R+F KT T++RT+LVRYA+E+G+
Sbjct:   19 SGK--ILLVDDEPGLREAVQVYLEDSGFNVNVASNANDGWDILQS--YLPDLVITDIMMPQIDGYQFLQKLREDPRFKALPVVFLTAKGMTTDRIQGYQAGCDAYLSKPFDPEELVAIVENLLERRMVAKTTNEGENTSDIAVLASQIAEIKAMLMGKNTIAQTPSPIKI---DLTPREQSVLDLVARGLMNKEIARDLNTSVRNVEKYVSRLFTKTGTNSRTELVRYALEHGL 245          
BLAST of mRNA_H-akashiwo_Contig116.16.1 vs. uniprot
Match: UPI0019F240D4 (Response regulator transcription factor n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI0019F240D4)

HSP 1 Score: 190 bits (483), Expect = 3.900e-57
Identity = 107/236 (45.34%), Postives = 155/236 (65.68%), Query Frame = 1
Query:    7 MSSGKTEVLLVDDDESILKSVSRYLAGRGVVVTTAASAKEAWVHLQTAPRLPDVLITDINMPGVDGYQLVQKLRSRIEYAALPIVFLSARGMTPDRIQGFRSGGQAYITKPFDPEELISLIDSLAA--TKRRME--DPKGIVSMRDELAKVRQALVESTSLRSAPKNDGIPPPSLTKREQSVLDRLAEGMTNKEIAQDLDLSLRYVEKVVERMFEKTQTSNRTKLVRYAVENGMVS 702
            MS     +LLVDD+  + ++V  YL   G  V TA++A E W  LQ +  +PDVLI+D+ MP VDGYQ ++++R    Y ALP+VFL+ARGMT DRIQG+ +G  AY+ KPFDPEEL++++ +L    T R  E  D   I +M  ++ +++  L +  S+   P    I     T REQ VL+++AEG+ NKEIA  L+ S+R VEK V R+F KT T++RT+LVRYA+E+G+++
Sbjct:    1 MSETTGRILLVDDEPGLREAVQAYLEDSGFEVETASNATEGWGKLQVS--MPDVLISDVMMPQVDGYQFLKQVREDARYQALPVVFLTARGMTSDRIQGYNAGVDAYLPKPFDPEELVAIVTNLIERKTSRVAEGGDVPDIAAMARQIEEIKALLTQRGSIAKTPAPIRI---DFTPREQDVLNKVAEGLMNKEIASRLETSVRNVEKYVSRLFSKTGTNSRTELVRYALEHGLIT 231          
BLAST of mRNA_H-akashiwo_Contig116.16.1 vs. uniprot
Match: A0A2T2RFG1_9CYAN (DNA-binding response regulator n=1 Tax=Cyanobacteria bacterium SW_9_44_58 TaxID=1919144 RepID=A0A2T2RFG1_9CYAN)

HSP 1 Score: 190 bits (482), Expect = 5.520e-57
Identity = 100/232 (43.10%), Postives = 158/232 (68.10%), Query Frame = 1
Query:   22 TEVLLVDDDESILKSVSRYLAGRGVVVTTAASAKEAWVHLQTAPRLPDVLITDINMPGVDGYQLVQKLRSRIEYAALPIVFLSARGMTPDRIQGFRSGGQAYITKPFDPEELISLIDSLAATKRRM----EDPKGIVSMRDELAKVRQALVESTSLRSAPKNDGIPPPSLTKREQSVLDRLAEGMTNKEIAQDLDLSLRYVEKVVERMFEKTQTSNRTKLVRYAVENGMVSS 705
            T++LLVDD   + ++V  YL   G ++  A++A E W  +Q  P  PD++ITDI MP VDGYQ ++KLR+   Y  LP+VFL+A+GMT DRI+G+ SG  AY++KPFDPEEL++++ +L + +  +    E    + ++  ++A+++  L E  ++++ P    I    LT REQS+L+ +AEG+ NKEIA+ L+ S+R VEK V R+F KT T++RT+LVR+A+++G+  S
Sbjct:    7 TKLLLVDDKPGLREAVEAYLEDEGFIIQVASNANEGWELIQQQP--PDLVITDIMMPQVDGYQFLEKLRNDPRYKGLPVVFLTAKGMTADRIKGYESGCDAYLSKPFDPEELVAIVKNLLSRRETVSQSGEQNANLDAISQQIAEIKTLLGEQGNVKTTPSPIKI---DLTPREQSILNLVAEGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALQHGLTES 233          
BLAST of mRNA_H-akashiwo_Contig116.16.1 vs. uniprot
Match: A0A8J6UT91_9CYAN (Response regulator transcription factor n=3 Tax=unclassified Trichocoleus TaxID=2628910 RepID=A0A8J6UT91_9CYAN)

HSP 1 Score: 189 bits (481), Expect = 6.700e-57
Identity = 103/229 (44.98%), Postives = 155/229 (67.69%), Query Frame = 1
Query:   25 EVLLVDDDESILKSVSRYLAGRGVVVTTAASAKEAWVHLQTAPRLPDVLITDINMPGVDGYQLVQKLRSRIEYAALPIVFLSARGMTPDRIQGFRSGGQAYITKPFDPEELISLIDSLAATKRRM---EDPK--GIVSMRDELAKVRQALVESTSLRSAPKNDGIPPPSLTKREQSVLDRLAEGMTNKEIAQDLDLSLRYVEKVVERMFEKTQTSNRTKLVRYAVENGM 696
            +VLLVDD+  + ++V  YL   G  V  A +A+E W  LQ   +LPD++I+D+ MP VDGYQ ++++R    + ALP+VFL+ARGMT DRIQG+++G  AY+ KPFDP+EL++++++L   +      ED +   I  M  ++A+++  L +  ++ + P      P   T REQSVLD +AEG+ NKEIA+ LD S+R VEK V R+F KT T++RT+LVRYA+E+G+
Sbjct:    4 QVLLVDDEPGLREAVQAYLEDSGFAVDVAGNAQEGWQLLQQ--KLPDLVISDVMMPQVDGYQFLKQMREDARFKALPVVFLTARGMTSDRIQGYQAGCDAYLPKPFDPDELVAIVENLLGRRTARAGTEDGETPDIADMARQIAEIKALLTQRNAISATPAPI---PVDFTPREQSVLDLVAEGLMNKEIARRLDTSVRNVEKYVSRLFSKTGTNSRTELVRYALEHGL 227          
BLAST of mRNA_H-akashiwo_Contig116.16.1 vs. uniprot
Match: A0A846AFD1_9CYAN (Response regulator transcription factor (Fragment) n=1 Tax=Leptolyngbya sp. SIO4C5 TaxID=2607774 RepID=A0A846AFD1_9CYAN)

HSP 1 Score: 189 bits (481), Expect = 7.350e-57
Identity = 104/236 (44.07%), Postives = 154/236 (65.25%), Query Frame = 1
Query:    1 SEMSSGKTEVLLVDDDESILKSVSRYLAGRGVVVTTAASAKEAWVHLQTAPRLPDVLITDINMPGVDGYQLVQKLRSRIEYAALPIVFLSARGMTPDRIQGFRSGGQAYITKPFDPEELISLIDSLAATKRRMEDPKG----IVSMRDELAKVRQALVESTSLRSAPKNDGIPPPSLTKREQSVLDRLAEGMTNKEIAQDLDLSLRYVEKVVERMFEKTQTSNRTKLVRYAVENGM 696
            +E S     +LLVDD+  + ++V  YL   G  V  A++AKE W  LQ +   PDVLI+D+ MP VDG++ ++++R  + + +LP+VFL+ARGMT DRIQG+ +G  AYI KPFDPEEL++++ +L   +       G    I +M  ++ +++  L +  S+   P    I    LT REQSVLD +AEG+ NKEIA+ L+ S+R VEK V R+F KT T++RT+LVRYA+E+G+
Sbjct:    2 AEQSEQPGNILLVDDEPGLREAVQAYLEDSGFNVEVASNAKEGWEKLQQST--PDVLISDVMMPQVDGFEFLKQVREDVRFQSLPVVFLTARGMTSDRIQGYNAGVDAYIPKPFDPEELVAVVSNLKGRRTTQSQASGDVPDIAAMARQIEEIKALLTQRGSIAQTPAPIRI---DLTPREQSVLDLVAEGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRYALEHGL 232          
BLAST of mRNA_H-akashiwo_Contig116.16.1 vs. uniprot
Match: A0A1J1LUT5_9CYAN (Putative transcriptional regulator ycf29 n=14 Tax=Oscillatoriales TaxID=1150 RepID=A0A1J1LUT5_9CYAN)

HSP 1 Score: 190 bits (482), Expect = 7.710e-57
Identity = 104/237 (43.88%), Postives = 156/237 (65.82%), Query Frame = 1
Query:    1 SEMSSGKTEVLLVDDDESILKSVSRYLAGRGVVVTTAASAKEAWVHLQTAPRLPDVLITDINMPGVDGYQLVQKLRSRIEYAALPIVFLSARGMTPDRIQGFRSGGQAYITKPFDPEELISLIDSLAATKRRMEDPKG-----IVSMRDELAKVRQALVESTSLRSAPKNDGIPPPSLTKREQSVLDRLAEGMTNKEIAQDLDLSLRYVEKVVERMFEKTQTSNRTKLVRYAVENGM 696
            +E+S     +LLVDD+  + ++V  YL      V  A++AK+ W  LQ    LPD++ITDI MPGVDGYQ +Q++R    + ALP+VFL+A+GM  DRIQG+++G  AY++KPFDPEEL+ ++ +L A +  +    G     I ++  ++A++   L   + +   P    I    LT REQSVLD +A+G+ NKEIA++L+ S+R VEK V R+F KT T++RT+LVRYA+E+G+
Sbjct:   12 AEVSQVPARLLLVDDEPGLREAVQAYLEDSNFTVDVASNAKQGWELLQQ--NLPDLVITDIMMPGVDGYQFLQQMREDPRFKALPVVFLTAKGMKSDRIQGYQAGCDAYLSKPFDPEELVVIVKNLLARQAALRSSTGDGNPDIATLAGQIARIENMLKGKSGIHQTPAPIKI---DLTPREQSVLDLVAKGLMNKEIARNLETSVRNVEKYVSRLFTKTGTNSRTELVRYALEHGL 243          
BLAST of mRNA_H-akashiwo_Contig116.16.1 vs. uniprot
Match: A0A2P8WFP9_9CYAN (DNA-binding response regulator n=1 Tax=filamentous cyanobacterium CCP5 TaxID=2107701 RepID=A0A2P8WFP9_9CYAN)

HSP 1 Score: 189 bits (480), Expect = 1.040e-56
Identity = 109/239 (45.61%), Postives = 154/239 (64.44%), Query Frame = 1
Query:    7 MSSGKTEVLLVDDDESILKSVSRYLAGRGVVVTTAASAKEAWVHLQTAPRLPDVLITDINMPGVDGYQLVQKLRSRIEYAALPIVFLSARGMTPDRIQGFRSGGQAYITKPFDPEELISLIDSLAATKRRMEDPKG------IVSMRDELAKVRQALVESTSLRSAPKNDGIPPPSLTKREQSVLDRLAEGMTNKEIAQDLDLSLRYVEKVVERMFEKTQTSNRTKLVRYAVENGMVSS 705
            MS     +LLVDD+  + ++V  YL   G  V  A++A+E W  LQ   + PDVLI+DI MP VDGYQ +Q++R    +  LP+VFL+ARGMT DRIQG+ +G  AY+ KPFDPEEL++++ +L   +RR     G      I  M  ++ +++  L +  S+   P    I    LT REQSVLD +AEG+ NKEIA  LD S+R VEK V R+F KT T++RT+LVR+A+E+G+V++
Sbjct:    1 MSEQTGHILLVDDEPGLREAVQAYLEDSGFTVEAASNAQEGWDLLQQ--KTPDVLISDIMMPQVDGYQFLQQVRDDARFKGLPVVFLTARGMTSDRIQGYTAGCDAYLPKPFDPEELVAIVTNLI--ERRNAQAPGTSGTPDIAMMARQIEEIKAMLTQRGSVNKTPSPIRI---DLTPREQSVLDLVAEGLMNKEIASRLDTSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGLVTT 232          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig116.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019E90B6C1.870e-5947.39Response regulator transcription factor n=1 Tax=Sy... [more]
UPI0008F98EE21.930e-5944.87response regulator transcription factor n=1 Tax=Ge... [more]
A0A1Z3HQF6_9CYAN1.130e-5846.96DNA-binding response regulator n=1 Tax=Halomicrone... [more]
A0A6L9ZXF7_9CYAN5.080e-5846.15Response regulator transcription factor n=18 Tax=O... [more]
UPI0019F240D43.900e-5745.34Response regulator transcription factor n=1 Tax=Le... [more]
A0A2T2RFG1_9CYAN5.520e-5743.10DNA-binding response regulator n=1 Tax=Cyanobacter... [more]
A0A8J6UT91_9CYAN6.700e-5744.98Response regulator transcription factor n=3 Tax=un... [more]
A0A846AFD1_9CYAN7.350e-5744.07Response regulator transcription factor (Fragment)... [more]
A0A1J1LUT5_9CYAN7.710e-5743.88Putative transcriptional regulator ycf29 n=14 Tax=... [more]
A0A2P8WFP9_9CYAN1.040e-5645.61DNA-binding response regulator n=1 Tax=filamentous... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig116contigH-akashiwo_Contig116:646124..646831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog388467.A19Y_4309
Preferred nameycf29
PFAMsGerE,Response_reg
Model size708
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.18e-57
EggNOG OGsCOG2197@1|root,COG2197@2|Bacteria,1G1TZ@1117|Cyanobacteria,1H7FH@1150|Oscillatoriales
DescriptionResponse regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
Cds size702
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387102.3566785-CDS-H-akashiwo_Contig116:646123..6468251681387102.3566785-CDS-H-akashiwo_Contig116:646123..646825Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig116 646124..646825 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387102.3708925-UTR-H-akashiwo_Contig116:646825..6468311681387102.3708925-UTR-H-akashiwo_Contig116:646825..646831Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig116 646826..646831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig116.16.1prot_H-akashiwo_Contig116.16.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig116 646124..646825 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig116.16.1

>prot_H-akashiwo_Contig116.16.1 ID=prot_H-akashiwo_Contig116.16.1|Name=mRNA_H-akashiwo_Contig116.16.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=234bp
MSSGKTEVLLVDDDESILKSVSRYLAGRGVVVTTAASAKEAWVHLQTAPR
LPDVLITDINMPGVDGYQLVQKLRSRIEYAALPIVFLSARGMTPDRIQGF
RSGGQAYITKPFDPEELISLIDSLAATKRRMEDPKGIVSMRDELAKVRQA
LVESTSLRSAPKNDGIPPPSLTKREQSVLDRLAEGMTNKEIAQDLDLSLR
YVEKVVERMFEKTQTSNRTKLVRYAVENGMVSS*
back to top

mRNA from alignment at H-akashiwo_Contig116:646124..646831-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig116.16.1 ID=mRNA_H-akashiwo_Contig116.16.1|Name=mRNA_H-akashiwo_Contig116.16.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=708bp|location=Sequence derived from alignment at H-akashiwo_Contig116:646124..646831- (Heterosigma akashiwo CCMP452)
TCAGAAATGTCTAGTGGGAAAACTGAAGTACTTCTTGTGGATGATGATGA GTCGATTTTGAAGTCGGTATCTCGCTACTTGGCTGGCCGGGGGGTCGTAG TGACCACCGCTGCTAGCGCAAAGGAGGCCTGGGTGCATTTGCAAACAGCC CCGCGGCTTCCAGATGTGCTTATTACAGACATTAATATGCCAGGTGTTGA TGGGTACCAGCTTGTTCAAAAGCTGCGATCTAGGATAGAGTATGCTGCCT TGCCAATCGTTTTTTTGTCAGCCCGAGGAATGACACCTGATCGTATCCAA GGTTTTAGAAGTGGGGGTCAAGCTTATATAACAAAGCCTTTCGATCCTGA GGAGCTCATATCACTGATTGATAGCTTGGCAGCCACCAAGAGAAGAATGG AGGATCCAAAAGGAATCGTTTCCATGAGGGATGAGCTGGCCAAGGTTCGC CAAGCTTTAGTTGAAAGCACAAGCCTGCGCAGTGCACCCAAAAATGATGG TATACCACCACCATCCCTGACTAAGAGAGAACAGTCTGTGCTGGATCGGT TGGCAGAAGGTATGACAAACAAAGAAATAGCCCAGGACCTCGATTTAAGC CTGCGATATGTAGAAAAGGTGGTTGAAAGAATGTTTGAAAAAACCCAAAC GTCCAATAGAACAAAGCTTGTGCGCTATGCTGTGGAGAATGGAATGGTGT CAAGCTGA
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig116:646124..646831-

>mRNA_H-akashiwo_Contig116.16.1 ID=mRNA_H-akashiwo_Contig116.16.1|Name=mRNA_H-akashiwo_Contig116.16.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=702bp|location=Sequence derived from alignment at H-akashiwo_Contig116:646124..646831- (Heterosigma akashiwo CCMP452)
ATGTCTAGTGGGAAAACTGAAGTACTTCTTGTGGATGATGATGAGTCGAT
TTTGAAGTCGGTATCTCGCTACTTGGCTGGCCGGGGGGTCGTAGTGACCA
CCGCTGCTAGCGCAAAGGAGGCCTGGGTGCATTTGCAAACAGCCCCGCGG
CTTCCAGATGTGCTTATTACAGACATTAATATGCCAGGTGTTGATGGGTA
CCAGCTTGTTCAAAAGCTGCGATCTAGGATAGAGTATGCTGCCTTGCCAA
TCGTTTTTTTGTCAGCCCGAGGAATGACACCTGATCGTATCCAAGGTTTT
AGAAGTGGGGGTCAAGCTTATATAACAAAGCCTTTCGATCCTGAGGAGCT
CATATCACTGATTGATAGCTTGGCAGCCACCAAGAGAAGAATGGAGGATC
CAAAAGGAATCGTTTCCATGAGGGATGAGCTGGCCAAGGTTCGCCAAGCT
TTAGTTGAAAGCACAAGCCTGCGCAGTGCACCCAAAAATGATGGTATACC
ACCACCATCCCTGACTAAGAGAGAACAGTCTGTGCTGGATCGGTTGGCAG
AAGGTATGACAAACAAAGAAATAGCCCAGGACCTCGATTTAAGCCTGCGA
TATGTAGAAAAGGTGGTTGAAAGAATGTTTGAAAAAACCCAAACGTCCAA
TAGAACAAAGCTTGTGCGCTATGCTGTGGAGAATGGAATGGTGTCAAGCT
GA
back to top