mRNA_H-akashiwo_Contig1158.1.2 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1158.1.2
Unique NamemRNA_H-akashiwo_Contig1158.1.2
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1158.1.2 vs. uniprot
Match: A0A067BWG4_SAPPC (40S ribosomal protein S27 n=6 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BWG4_SAPPC)

HSP 1 Score: 154 bits (390), Expect = 2.070e-47
Identity = 73/81 (90.12%), Postives = 77/81 (95.06%), Query Frame = 1 
Query:   37 MPRDLLNPSASEEARKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVLCGSCSMMLCQPTGGRARLTEGCSFRRKV 279
            M RDLL+PSASEE  KHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVLCGSCS+MLCQPTGG+ARLTEGCSFR+K 
Sbjct:    1 MARDLLHPSASEERSKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVLCGSCSVMLCQPTGGKARLTEGCSFRKKT 81
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BLAST of mRNA_H-akashiwo_Contig1158.1.2 vs. uniprot
Match: F0YBZ0_AURAN (40S ribosomal protein S27 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBZ0_AURAN)

HSP 1 Score: 152 bits (384), Expect = 1.700e-46
Identity = 71/81 (87.65%), Postives = 77/81 (95.06%), Query Frame = 1 
Query:   37 MPRDLLNPSASEEARKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVLCGSCSMMLCQPTGGRARLTEGCSFRRKV 279
            M +DLL+PS+ EE RKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQT VLCGSCSMMLCQPTGG+ARLTEGCSFR+K+
Sbjct:    1 MVKDLLHPSSVEEKRKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTTVLCGSCSMMLCQPTGGKARLTEGCSFRKKL 81
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BLAST of mRNA_H-akashiwo_Contig1158.1.2 vs. uniprot
Match: A0A835Z0C8_9STRA (40S ribosomal protein S27 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0C8_9STRA)

HSP 1 Score: 152 bits (383), Expect = 2.420e-46
Identity = 70/81 (86.42%), Postives = 76/81 (93.83%), Query Frame = 1 
Query:   37 MPRDLLNPSASEEARKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVLCGSCSMMLCQPTGGRARLTEGCSFRRKV 279
            MP D+L+PSA EE RKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVV+CG+CS +LC PTGG+ARLTEGCSFRRKV
Sbjct:    1 MPHDILHPSAEEEKRKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVVCGACSTILCHPTGGKARLTEGCSFRRKV 81
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BLAST of mRNA_H-akashiwo_Contig1158.1.2 vs. uniprot
Match: M4BSI3_HYAAE (40S ribosomal protein S27 n=20 Tax=Oomycota TaxID=4762 RepID=M4BSI3_HYAAE)

HSP 1 Score: 151 bits (381), Expect = 5.490e-46
Identity = 68/81 (83.95%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:   37 MPRDLLNPSASEEARKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVLCGSCSMMLCQPTGGRARLTEGCSFRRKV 279
            +PRDLL+PSA+EEA KHKL+RLVQSPNS+FMDVKCPGCFNITTVFSHAQTVVLCGSCS+MLCQPTGG+ARLT+GC +R+K 
Sbjct:    5 LPRDLLHPSAAEEASKHKLRRLVQSPNSYFMDVKCPGCFNITTVFSHAQTVVLCGSCSVMLCQPTGGKARLTDGCQYRKKT 85
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BLAST of mRNA_H-akashiwo_Contig1158.1.2 vs. uniprot
Match: F4RQL1_MELLP (40S ribosomal protein S27 n=3 Tax=Pucciniales TaxID=5258 RepID=F4RQL1_MELLP)

HSP 1 Score: 150 bits (378), Expect = 1.440e-45
Identity = 70/81 (86.42%), Postives = 76/81 (93.83%), Query Frame = 1 
Query:   34 TMPRDLLNPSASEEARKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVLCGSCSMMLCQPTGGRARLTEGCSFRRK 276
            T+  DLLNPSA +E RKHKLKRLVQSPNS+FMDVKCPGCFNITTVFSHAQTVVLCGSC+ +LCQPTGG+ARLTEGCSFRRK
Sbjct:    2 TLAIDLLNPSAEQERRKHKLKRLVQSPNSYFMDVKCPGCFNITTVFSHAQTVVLCGSCATVLCQPTGGKARLTEGCSFRRK 82
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BLAST of mRNA_H-akashiwo_Contig1158.1.2 vs. uniprot
Match: E3KW44_PUCGT (40S ribosomal protein S27 n=4 Tax=Puccinia TaxID=5296 RepID=E3KW44_PUCGT)

HSP 1 Score: 150 bits (378), Expect = 3.480e-45
Identity = 70/81 (86.42%), Postives = 76/81 (93.83%), Query Frame = 1 
Query:   34 TMPRDLLNPSASEEARKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVLCGSCSMMLCQPTGGRARLTEGCSFRRK 276
            T+  DLLNPSA +E RKHKLKRLVQSPNS+FMDVKCPGCFNITTVFSHAQTVVLCGSC+ +LCQPTGG+ARLTEGCSFRRK
Sbjct:   31 TLAVDLLNPSAEQERRKHKLKRLVQSPNSYFMDVKCPGCFNITTVFSHAQTVVLCGSCATVLCQPTGGKARLTEGCSFRRK 111
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BLAST of mRNA_H-akashiwo_Contig1158.1.2 vs. uniprot
Match: W2JF57_PHYPR (40S ribosomal protein S27 n=10 Tax=Oomycota TaxID=4762 RepID=W2JF57_PHYPR)

HSP 1 Score: 151 bits (381), Expect = 3.580e-45
Identity = 68/81 (83.95%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:   37 MPRDLLNPSASEEARKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVLCGSCSMMLCQPTGGRARLTEGCSFRRKV 279
            MPRDLL+PSA+EEA KHKL+RLVQ+PNS+FMDVKCPGCFNITTVFSHAQTVVLCGSCS+MLCQPTGG+ARLT+GC +R+K 
Sbjct:    1 MPRDLLHPSAAEEASKHKLRRLVQAPNSYFMDVKCPGCFNITTVFSHAQTVVLCGSCSVMLCQPTGGKARLTDGCQYRKKT 81
[Close]
BLAST of mRNA_H-akashiwo_Contig1158.1.2 vs. uniprot
Match: D7FUE0_ECTSI (40S ribosomal protein S27 n=3 Tax=PX clade TaxID=569578 RepID=D7FUE0_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 4.010e-45
Identity = 69/81 (85.19%), Postives = 76/81 (93.83%), Query Frame = 1 
Query:   37 MPRDLLNPSASEEARKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVLCGSCSMMLCQPTGGRARLTEGCSFRRKV 279
            MP DLL+P++S E R HKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVV+CGSCS +LCQPTGG+ARLTEGCSFR+KV
Sbjct:    1 MPADLLHPTSSHEKRVHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVVCGSCSTILCQPTGGKARLTEGCSFRKKV 81
[Close]
BLAST of mRNA_H-akashiwo_Contig1158.1.2 vs. uniprot
Match: B8CCJ1_THAPS (RS27, ribosomal protein 27 40S small ribosomal subunit n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCJ1_THAPS)

HSP 1 Score: 148 bits (373), Expect = 8.100e-45
Identity = 68/81 (83.95%), Postives = 76/81 (93.83%), Query Frame = 1 
Query:   37 MPRDLLNPSASEEARKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVLCGSCSMMLCQPTGGRARLTEGCSFRRKV 279
            MP DLL+P+A +EAR HKLKRLV SPNSFFMD+KCPGCF ITTVFSHAQTVVLCGSC++MLCQPTGGRARLTEGCS+R+KV
Sbjct:    1 MPVDLLHPTAEQEARTHKLKRLVASPNSFFMDIKCPGCFQITTVFSHAQTVVLCGSCNVMLCQPTGGRARLTEGCSYRKKV 81
[Close]
BLAST of mRNA_H-akashiwo_Contig1158.1.2 vs. uniprot
Match: A0A3M6VGE9_9STRA (40S ribosomal protein S27 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VGE9_9STRA)

HSP 1 Score: 147 bits (370), Expect = 2.700e-44
Identity = 65/80 (81.25%), Postives = 77/80 (96.25%), Query Frame = 1 
Query:   40 PRDLLNPSASEEARKHKLKRLVQSPNSFFMDVKCPGCFNITTVFSHAQTVVLCGSCSMMLCQPTGGRARLTEGCSFRRKV 279
            PRDLL+P+A++EA KHKL+RLVQ+PNS+FMDVKCPGCFNITTVFSHAQTVVLCGSCS+MLCQPTGG+ARLT+GC +R+K 
Sbjct:    7 PRDLLHPTAADEASKHKLRRLVQTPNSYFMDVKCPGCFNITTVFSHAQTVVLCGSCSVMLCQPTGGKARLTDGCQYRKKT 86
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1158.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067BWG4_SAPPC2.070e-4790.1240S ribosomal protein S27 n=6 Tax=Saprolegniaceae ... [more]
F0YBZ0_AURAN1.700e-4687.6540S ribosomal protein S27 n=1 Tax=Aureococcus anop... [more]
A0A835Z0C8_9STRA2.420e-4686.4240S ribosomal protein S27 n=1 Tax=Tribonema minus ... [more]
M4BSI3_HYAAE5.490e-4683.9540S ribosomal protein S27 n=20 Tax=Oomycota TaxID=... [more]
F4RQL1_MELLP1.440e-4586.4240S ribosomal protein S27 n=3 Tax=Pucciniales TaxI... [more]
E3KW44_PUCGT3.480e-4586.4240S ribosomal protein S27 n=4 Tax=Puccinia TaxID=5... [more]
W2JF57_PHYPR3.580e-4583.9540S ribosomal protein S27 n=10 Tax=Oomycota TaxID=... [more]
D7FUE0_ECTSI4.010e-4585.1940S ribosomal protein S27 n=3 Tax=PX clade TaxID=5... [more]
B8CCJ1_THAPS8.100e-4583.95RS27, ribosomal protein 27 40S small ribosomal sub... [more]
A0A3M6VGE9_9STRA2.700e-4481.2540S ribosomal protein S27 n=1 Tax=Peronospora effu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1158contigH-akashiwo_Contig1158:32016..32497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008870490.1
Preferred nameRPS27
PFAMsRibosomal_S27e
Model size281
Max annot lvl2759|Eukaryota
KEGG koko:K02978,ko:K08053,ko:K18061
KEGG Pathwayko03010,ko04010,ko04014,ko05203,map03010,map04010,map04014,map05203
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000075,GO:0000077,GO:0000184,GO:0000278,GO:0000462,GO:0000469,GO:0000478,GO:0000479,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006915,GO:0006919,GO:0006950,GO:0006974,GO:0006978,GO:0006996,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007346,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008270,GO:0008283,GO:0008494,GO:0008630,GO:0008656,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010941,GO:0010942,GO:0010948,GO:0010950,GO:0010952,GO:0012501,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016504,GO:0016505,GO:0019222,GO:0019439,GO:0019538,GO:0022402,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0023052,GO:0030054,GO:0030162,GO:0030234,GO:0030312,GO:0030330,GO:0030490,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031570,GO:0031571,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034248,GO:0034250,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035556,GO:0042254,GO:0042255,GO:0042274,GO:0042770,GO:0042771,GO:0042772,GO:0042788,GO:0042886,GO:0042981,GO:0043028,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043280,GO:0043281,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045047,GO:0045182,GO:0045184,GO:0045727,GO:0045786,GO:0045862,GO:0045930,GO:0046483,GO:0046700,GO:0046872,GO:0046907,GO:0046914,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0052547,GO:0052548,GO:0055044,GO:0060255,GO:0061134,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072331,GO:0072332,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090079,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097190,GO:0097193,GO:0098772,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902806,GO:1902807,GO:1903047,GO:1990904,GO:2000045,GO:2000112,GO:2000116,GO:2000134,GO:2001056
Exons2
Evalue5.85e-49
EggNOG OGsCOG2051@1|root,KOG1779@2759|Eukaryota
Descriptionribosomal small subunit assembly
Cds size279
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01009,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387100.9375908-CDS-H-akashiwo_Contig1158:32015..321111681387100.9375908-CDS-H-akashiwo_Contig1158:32015..32111Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1158 32016..32111 -
1681387100.9508588-CDS-H-akashiwo_Contig1158:32314..324971681387100.9508588-CDS-H-akashiwo_Contig1158:32314..32497Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1158 32315..32497 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1158.1.2prot_H-akashiwo_Contig1158.1.2Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1158 32016..32497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1158.1.2

>prot_H-akashiwo_Contig1158.1.2 ID=prot_H-akashiwo_Contig1158.1.2|Name=mRNA_H-akashiwo_Contig1158.1.2|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=93bp
RETLIERTPRRTMPRDLLNPSASEEARKHKLKRLVQSPNSFFMDVKCPGC
FNITTVFSHAQTVVLCGSCSMMLCQPTGGRARLTEGCSFRRKV
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mRNA from alignment at H-akashiwo_Contig1158:32016..32497-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1158.1.2 ID=mRNA_H-akashiwo_Contig1158.1.2|Name=mRNA_H-akashiwo_Contig1158.1.2|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=482bp|location=Sequence derived from alignment at H-akashiwo_Contig1158:32016..32497- (Heterosigma akashiwo CCMP452)
CGAGAAACACTCATTGAGAGAACACCTCGGAGAACAATGCCTCGTGATCT
CCTCAACCCTTCCGCCTCTGAGGAGGCTAGAAAGCACAAACTGAAGAGGC
TAGTTCAGTCCCCTAATAGCTTTTTCATGGACGTTAAGTGCCCCGGCTGC
TTCAACATCACCACCGTATTCAGTCACGCCCAGGTAATAAATAAATAAAT
GGAATAATTAGTAACAAATACCCGTCTCGACCCCACCAGCATGCTTCTGA
TACTTCATGGATGAATATTAGTTATTAATGAATATTATGGGTTGAAATAG
TCCAAAATTCTCCGTCATTCGCTCCATTATTTTGACAATTTGCTATTACT
TCTTCATGATGCCTAACTATTGTGCTCTGAACCCAGACCGTTGTCCTTTG
CGGTAGCTGCTCTATGATGCTTTGCCAGCCGACTGGTGGCCGTGCACGCC
TCACAGAAGGGTGCTCTTTCAGAAGAAAGGTA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1158:32016..32497-

>mRNA_H-akashiwo_Contig1158.1.2 ID=mRNA_H-akashiwo_Contig1158.1.2|Name=mRNA_H-akashiwo_Contig1158.1.2|organism=Heterosigma akashiwo CCMP452|type=CDS|length=279bp|location=Sequence derived from alignment at H-akashiwo_Contig1158:32016..32497- (Heterosigma akashiwo CCMP452)
CGAGAAACACTCATTGAGAGAACACCTCGGAGAACAATGCCTCGTGATCT
CCTCAACCCTTCCGCCTCTGAGGAGGCTAGAAAGCACAAACTGAAGAGGC
TAGTTCAGTCCCCTAATAGCTTTTTCATGGACGTTAAGTGCCCCGGCTGC
TTCAACATCACCACCGTATTCAGTCACGCCCAGACCGTTGTCCTTTGCGG
TAGCTGCTCTATGATGCTTTGCCAGCCGACTGGTGGCCGTGCACGCCTCA
CAGAAGGGTGCTCTTTCAGAAGAAAGGTA
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