mRNA_H-akashiwo_Contig1155.16.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1155.16.1
Unique NamemRNA_H-akashiwo_Contig1155.16.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1155.16.1 vs. uniprot
Match: A0A7S3XW83_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XW83_HETAK)

HSP 1 Score: 145 bits (365), Expect = 8.050e-41
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:   11 MRFSPACNSFAASYLIRQTSCTAREFQFCTKHLSAARQLHTTMQKQKENECSIFSNLYVSEGRDEQFINELHE 229
            MRFSPACNSFAASYLIRQTS TAREFQFCTKHLSAARQLHTTMQKQKENECSIFSNLYVSEGRDEQFINELHE
Sbjct:    1 MRFSPACNSFAASYLIRQTSSTAREFQFCTKHLSAARQLHTTMQKQKENECSIFSNLYVSEGRDEQFINELHE 73
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1155.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XW83_HETAK8.050e-4198.63Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1155contigH-akashiwo_Contig1155:301991..302381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size231
Hectar predicted targeting categoryother localisation
Exons2
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387100.038584-CDS-H-akashiwo_Contig1155:301990..3020261681387100.038584-CDS-H-akashiwo_Contig1155:301990..302026Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1155 301991..302026 -
1681387100.0472503-CDS-H-akashiwo_Contig1155:302188..3023711681387100.0472503-CDS-H-akashiwo_Contig1155:302188..302371Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1155 302189..302371 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387100.0555172-UTR-H-akashiwo_Contig1155:302371..3023811681387100.0555172-UTR-H-akashiwo_Contig1155:302371..302381Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1155 302372..302381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1155.16.1prot_H-akashiwo_Contig1155.16.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1155 301991..302371 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1155.16.1

>prot_H-akashiwo_Contig1155.16.1 ID=prot_H-akashiwo_Contig1155.16.1|Name=mRNA_H-akashiwo_Contig1155.16.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=73bp
MRFSPACNSFAASYLIRQTSCTAREFQFCTKHLSAARQLHTTMQKQKENE
CSIFSNLYVSEGRDEQFINELHE
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mRNA from alignment at H-akashiwo_Contig1155:301991..302381-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1155.16.1 ID=mRNA_H-akashiwo_Contig1155.16.1|Name=mRNA_H-akashiwo_Contig1155.16.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=391bp|location=Sequence derived from alignment at H-akashiwo_Contig1155:301991..302381- (Heterosigma akashiwo CCMP452)
CTGGGGGGCAATGCGCTTTTCCCCGGCATGCAACTCATTTGCAGCCTCAT
ACTTGATCAGGCAGACATCTTGTACGGCCCGGGAATTTCAGTTCTGTACT
AAACATTTGAGCGCTGCAAGGCAGCTTCACACAACAATGCAGAAGCAAAA
AGAAAACGAGTGCAGCATTTTCAGCAACCTATATGTCTCCGAGGTAAAAA
TGGAAATTCATAGAAAATACATATCTACTTTCTTATTCTGATTATACCCA
GAAGAATTTGCTGAACAACTCCCCCAGCTACATACTACAGTATGGTACAA
GTACGTGAGAATCACCATTGGGTTTCTTTTTTCCACAACAATGTTTAAAT
CATAGGGAAGGGATGAACAATTCATCAATGAGCTCCACGAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1155:301991..302381-

>mRNA_H-akashiwo_Contig1155.16.1 ID=mRNA_H-akashiwo_Contig1155.16.1|Name=mRNA_H-akashiwo_Contig1155.16.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=219bp|location=Sequence derived from alignment at H-akashiwo_Contig1155:301991..302381- (Heterosigma akashiwo CCMP452)
ATGCGCTTTTCCCCGGCATGCAACTCATTTGCAGCCTCATACTTGATCAG
GCAGACATCTTGTACGGCCCGGGAATTTCAGTTCTGTACTAAACATTTGA
GCGCTGCAAGGCAGCTTCACACAACAATGCAGAAGCAAAAAGAAAACGAG
TGCAGCATTTTCAGCAACCTATATGTCTCCGAGGGAAGGGATGAACAATT
CATCAATGAGCTCCACGAA
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