mRNA_H-akashiwo_Contig1150.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1150.2.1
Unique NamemRNA_H-akashiwo_Contig1150.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1150.2.1 vs. uniprot
Match: A0A518HQ46_9BACT (Non-specific serine/threonine protein kinase n=1 Tax=Stieleria neptunia TaxID=2527979 RepID=A0A518HQ46_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 5.440e-5
Identity = 23/58 (39.66%), Postives = 37/58 (63.79%), Query Frame = 3 
Query:  135 SRHRILRGHKFRCFDSQIDPSGQCFATASEDGTVKIWHLASGQPMAVLEHSASEVRTM 308
            +R   L GH  R F + + P+G+   T SEDG V++W++A+GQP+ VL   +S +R +
Sbjct: 1097 NRLATLVGHNDRVFAACLHPNGRTLVTGSEDGEVRLWNVATGQPLFVLRSFSSPIRQL 1154
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1150.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A518HQ46_9BACT5.440e-539.66Non-specific serine/threonine protein kinase n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1150contigH-akashiwo_Contig1150:156159..157024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FSW0
PFAMsBromodomain,WD40
Model size387
Max annot lvl2759|Eukaryota
KEGG koko:K01265,ko:K11797
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.74e-05
EggNOG OGsCOG2319@1|root,KOG0263@2759|Eukaryota
EC3.4.11.18
Descriptiontranscription initiation from RNA polymerase II promoter
Cds size294
COG categoryQ
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387098.6627405-UTR-H-akashiwo_Contig1150:156158..1561681681387098.6627405-UTR-H-akashiwo_Contig1150:156158..156168Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1150 156159..156168 -
1681387098.7110288-UTR-H-akashiwo_Contig1150:156941..1570241681387098.7110288-UTR-H-akashiwo_Contig1150:156941..157024Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1150 156942..157024 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387098.6757798-CDS-H-akashiwo_Contig1150:156168..1563301681387098.6757798-CDS-H-akashiwo_Contig1150:156168..156330Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1150 156169..156330 -
1681387098.6908352-CDS-H-akashiwo_Contig1150:156669..1567211681387098.6908352-CDS-H-akashiwo_Contig1150:156669..156721Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1150 156670..156721 -
1681387098.7012162-CDS-H-akashiwo_Contig1150:156861..1569411681387098.7012162-CDS-H-akashiwo_Contig1150:156861..156941Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1150 156862..156941 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1150.2.1prot_H-akashiwo_Contig1150.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1150 156169..156941 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1150.2.1

>prot_H-akashiwo_Contig1150.2.1 ID=prot_H-akashiwo_Contig1150.2.1|Name=mRNA_H-akashiwo_Contig1150.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=98bp
MTEGPIFDVVCRAISDDSRHRILRGHKFRCFDSQIDPSGQCFATASEDGT
VKIWHLASGQPMAVLEHSASEVRTMFKGVWTHTPCFNPLSASFFVSL*
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mRNA from alignment at H-akashiwo_Contig1150:156159..157024-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1150.2.1 ID=mRNA_H-akashiwo_Contig1150.2.1|Name=mRNA_H-akashiwo_Contig1150.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=866bp|location=Sequence derived from alignment at H-akashiwo_Contig1150:156159..157024- (Heterosigma akashiwo CCMP452)
CGACGAAGAAAAGCGATTGGCGAAGGTTGTTTCAGGAGTACAATAGTGCC
CTCCTCCTCCAAGAAAAGCGATTGACGAAGAAAATGACAGAAGGTCCCAT
TTTTGACGTGGTATGCCGAGCTATCAGTGATGACTCCCGGCATAGAATTC
TACGTGGTCACAAGTACGAGGCCTTCGTTTTTTGCATACTTCTTCTGTTA
TTATATTTTATTGTACCATTATATACTGCTACTACAAAAACGTTCATATT
GTATTCTATCACACAGTACGATATAAGACCCTCCTTCTATCCATTTCACA
CAGGTTTCGCTGTTTTGACTCGCAAATTGACCCATCTGGGCAATGCTTTG
CAACTGTGAGTAATTTTTTTTACGCCATGTCTATGCATACGTATTATTGG
AAAAAATATGTGCATAAAATGTGTGGTGCTGTCAAACAAGAACCAGAAAA
CACTACTATGCGGGTCATATTTTTTGGCACATCGCATTTTATGATCAGAG
AATGAAATCCACTCAACCCACCCTAATGGGCTGTATACTGAATCTCTAAG
ATGAAACATACAACCAACAATACGTATCGCAAATGTTTTCAAGATATGTA
CCCGTTTGAAAGGCTAGAATTGAAACTAAAATTATCATCATCATCATCAT
CATCATCATCGTGTACCACACAATTGTTTTCATAATAACGACAGGCATCG
GAGGATGGAACGGTGAAAATTTGGCACCTAGCCAGTGGACAACCTATGGC
TGTACTAGAGCATTCTGCTTCAGAGGTGCGGACAATGTTCAAAGGAGTAT
GGACACATACACCTTGTTTTAACCCCCTTTCAGCATCCTTTTTTGTATCG
CTATAATCACTATAAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1150:156159..157024-

>mRNA_H-akashiwo_Contig1150.2.1 ID=mRNA_H-akashiwo_Contig1150.2.1|Name=mRNA_H-akashiwo_Contig1150.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=294bp|location=Sequence derived from alignment at H-akashiwo_Contig1150:156159..157024- (Heterosigma akashiwo CCMP452)
ATGACAGAAGGTCCCATTTTTGACGTGGTATGCCGAGCTATCAGTGATGA
CTCCCGGCATAGAATTCTACGTGGTCACAAGTTTCGCTGTTTTGACTCGC
AAATTGACCCATCTGGGCAATGCTTTGCAACTGCATCGGAGGATGGAACG
GTGAAAATTTGGCACCTAGCCAGTGGACAACCTATGGCTGTACTAGAGCA
TTCTGCTTCAGAGGTGCGGACAATGTTCAAAGGAGTATGGACACATACAC
CTTGTTTTAACCCCCTTTCAGCATCCTTTTTTGTATCGCTATAA
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