mRNA_H-akashiwo_Contig115.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig115.2.1
Unique NamemRNA_H-akashiwo_Contig115.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig115.2.1 vs. uniprot
Match: A0A7S3Y9N2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9N2_HETAK)

HSP 1 Score: 96.7 bits (239), Expect = 1.120e-23
Identity = 43/56 (76.79%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:  142 SSKENRLTLGKEFANCASFGNPNMSRKNAVVISAADLKAWGRMPRYEQCAERGQHV 309
            +S ++RLTLG EFA CAS GNPNMSR+NAVVIS A+LKAWGRMP +E+CAERGQHV
Sbjct:   19 ASVQDRLTLGAEFAECASIGNPNMSRENAVVISVANLKAWGRMPFFEECAERGQHV 74
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BLAST of mRNA_H-akashiwo_Contig115.2.1 vs. uniprot
Match: A0A7S4DE81_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DE81_HETAK)

HSP 1 Score: 85.1 bits (209), Expect = 1.580e-18
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:  151 ENRLTLGKEFANCASFGNPNMSRKNAVVISAADLKAWGRMPRYEQCAERGQHV 309
            ++RL LG +F + AS GNPNMSR NAVVIS ADLKAWGRMP YE+CA R QHV
Sbjct:   67 QDRLALGAQFTDRASIGNPNMSRSNAVVISTADLKAWGRMPYYEECAGRAQHV 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig115.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3Y9N2_HETAK1.120e-2376.79Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DE81_HETAK1.580e-1871.70Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig115contigH-akashiwo_Contig115:61411..61919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size320
Hectar predicted targeting categoryother localisation
Exons2
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387098.3787127-CDS-H-akashiwo_Contig115:61410..615631681387098.3787127-CDS-H-akashiwo_Contig115:61410..61563Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig115 61411..61563 +
1681387098.3894608-CDS-H-akashiwo_Contig115:61754..619191681387098.3894608-CDS-H-akashiwo_Contig115:61754..61919Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig115 61755..61919 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig115.2.1prot_H-akashiwo_Contig115.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig115 61411..61919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig115.2.1

>prot_H-akashiwo_Contig115.2.1 ID=prot_H-akashiwo_Contig115.2.1|Name=mRNA_H-akashiwo_Contig115.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=106bp
MHQSLQATTAEETPPTNTRSMIAEIITTTPPLPLHHTTYKLGPMGCTSSK
ENRLTLGKEFANCASFGNPNMSRKNAVVISAADLKAWGRMPRYEQCAERG
QHVPIE
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mRNA from alignment at H-akashiwo_Contig115:61411..61919+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig115.2.1 ID=mRNA_H-akashiwo_Contig115.2.1|Name=mRNA_H-akashiwo_Contig115.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=509bp|location=Sequence derived from alignment at H-akashiwo_Contig115:61411..61919+ (Heterosigma akashiwo CCMP452)
ATGCATCAATCATTACAAGCAACAACTGCTGAAGAGACACCACCCACAAA
TACACGGTCGATGATTGCTGAAATCATCACCACCACTCCTCCTTTGCCTT
TGCATCATACAACATACAAGCTTGGACCCATGGGTTGCACCAGTTCTAAG
GAGGTGAGCTTTTGCTTATGCTGCTGACGAGTCACGAGAATGTGGCTTGA
CAAGTCTGATACCGTTGCTGCTGCTATGATAAGTATACTACAATACCCTC
ACGTCTGCATGCACACGGATAAATATCCCGCTGTCTCCTCTCAGTCTCGT
CTCTCCTCTCTCACTAAACCATGCCCCCTCTTGATTTCACACAGAACCGC
CTCACTCTTGGTAAAGAGTTTGCTAACTGCGCAAGCTTCGGAAACCCTAA
CATGAGCCGCAAGAATGCAGTGGTGATCTCCGCCGCGGACTTGAAGGCTT
GGGGGCGCATGCCTCGATATGAACAGTGCGCGGAGCGGGGCCAACACGTG
CCCATTGAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig115:61411..61919+

>mRNA_H-akashiwo_Contig115.2.1 ID=mRNA_H-akashiwo_Contig115.2.1|Name=mRNA_H-akashiwo_Contig115.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=318bp|location=Sequence derived from alignment at H-akashiwo_Contig115:61411..61919+ (Heterosigma akashiwo CCMP452)
ATGCATCAATCATTACAAGCAACAACTGCTGAAGAGACACCACCCACAAA
TACACGGTCGATGATTGCTGAAATCATCACCACCACTCCTCCTTTGCCTT
TGCATCATACAACATACAAGCTTGGACCCATGGGTTGCACCAGTTCTAAG
GAGAACCGCCTCACTCTTGGTAAAGAGTTTGCTAACTGCGCAAGCTTCGG
AAACCCTAACATGAGCCGCAAGAATGCAGTGGTGATCTCCGCCGCGGACT
TGAAGGCTTGGGGGCGCATGCCTCGATATGAACAGTGCGCGGAGCGGGGC
CAACACGTGCCCATTGAA
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