mRNA_H-akashiwo_Contig1146.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1146.6.1
Unique NamemRNA_H-akashiwo_Contig1146.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1146.6.1 vs. uniprot
Match: A0A6V7Q0G3_ANACO (Integrase catalytic domain-containing protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7Q0G3_ANACO)

HSP 1 Score: 157 bits (396), Expect = 6.630e-42
Identity = 89/258 (34.50%), Postives = 130/258 (50.39%), Query Frame = 1
Query:   16 LWHLRMGHASTKFLSVMNSYSVVNGMVPYNSSDNELFCEPCVLAKAKRSPFGLPGVKIKEDRQVCLMDLISADLTGPFSVRSVTGNRYVLILIEHYSDYCWIYPLKNKSQATANVMTLFELLHNQLGTYPNKFRTDRGGEFYNDELQSFLSNKGIIAESGPASTPEYNMKQERKQLFLETMANAQLDASPLTKGYWDLSWVVAVYVSNRLPAHKDKGFLTRFELLWNKKPDVSHMRPFGCVGYCALSSANRKKMNPKS 789
            +WH R+GH S   L VM S ++VNG+    +  +   CE C   KA R PF     K K       +DL+ +DL GP S  S +G+RY+L+ ++ ++ Y W+Y +K KS+  +  +   E +   +       RTD GGEF ++E  SF   +GI  E   A TP+ N   ERK   L     + L A  L K  W      A YV NR+P      F + +EL+W +KP+V H + FG   Y  +    R K++PK+
Sbjct:    9 IWHARLGHLSMDKLKVMVSKNLVNGLPNLATFGSSELCEGCQYGKAHRLPFDKSVTKSKAP-----LDLVHSDLMGPTSTPSYSGSRYMLLFVDDFTRYTWVYFVKEKSEVFSKFIEFKETVEGVVNRKIKCLRTDNGGEFTSNEFFSFCRQQGIKRELSCAYTPQQNGVAERKIRHLVETCKSWLHAKNLPKALWAEGMACAAYVINRVPLCPT-NFKSPYELMWGEKPNVKHFKVFGSTCYVHVPGNLRGKLDPKA 260          
BLAST of mRNA_H-akashiwo_Contig1146.6.1 vs. uniprot
Match: UPI0016589FE9 (uncharacterized protein LOC118514016 isoform X1 n=1 Tax=Anopheles stephensi TaxID=30069 RepID=UPI0016589FE9)

HSP 1 Score: 161 bits (408), Expect = 2.210e-41
Identity = 92/263 (34.98%), Postives = 143/263 (54.37%), Query Frame = 1
Query:    4 NTKFLWHLRMGHASTKFLSVMNSYSVVNGMVPYNSSDNELFCEPCVLAKAKRSPFGLPGVKIKEDRQVCLMDLISADLTGPFSVRSVTGNRYVLILIEHYSDYCWIYPLKNKSQATANVMTLFELLHNQLGTYPNKFRTDRGGEFYNDELQSFLSNKGIIAESGPASTPEYNMKQERKQLFLETMANAQLDASPLTKGYWDLSWVVAVYVSNRLP-AHKDKGFLTRFELLWNKKPDVSHMRPFGCVGYCALSSANRKKMNPKS 789
            N +  WH R+GH     +  M  Y +V+G+   +       CE C+  K  RSPF  P V  K   +V  +D+I +D+ GP    ++ G RY + LI+ +S Y ++Y LK KS+    +    +L+ NQ G  P   R+D+GGE+++  L+ F +++GI  E   A +P+ N   ERK   L  M    L  + + K +W  +   A Y+ NRLP A  D+   T FE+ + KKPD++++R FGCVGY  + S  RKK++ K+
Sbjct:  404 NCQHTWHRRLGHRDPAVIGEMKRYDLVSGLKVVDCGIRWT-CECCIECKMARSPF--PPVAEKTSTEV--LDIIHSDVCGPMEETTLGGCRYYMTLIDDHSRYTFVYFLKKKSEVENKIREYVKLVQNQFGRKPRIIRSDQGGEYFSKALRKFCADEGIKMEFTAAYSPQQNGVAERKNRSLTEMGRCMLRDAGMHKRFWAEAVNTACYLQNRLPSAAVDR---TPFEIWFGKKPDLTNLRLFGCVGYVLIPSVKRKKLDVKA 658          
BLAST of mRNA_H-akashiwo_Contig1146.6.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY)

HSP 1 Score: 155 bits (392), Expect = 2.980e-39
Identity = 86/258 (33.33%), Postives = 131/258 (50.78%), Query Frame = 1
Query:   13 FLWHLRMGHASTKFLSVMNSYSVVNGMVPYNSSDNELFCEPCVLAKAKRSPFGLPGVKIKEDRQVCLMDLISADLTGPFSVRSVTGNRYVLILIEHYSDYCWIYPLKNKSQATANVMTLFELLHNQLGTYPNKFRTDRGGEFYNDELQSFLSNKGIIAESGPASTPEYNMKQERKQLFLETMANAQLDASPLTKGYWDLSWVVAVYVSNRLPAHKDKGFLTRFELLWNKKPDVSHMRPFGCVGYCALSSANRKKMNPK 786
            +LWHLR GH     L +++  S+V G+ P  +  N+L CE C+  K  R  F +     +  R   L++++  D+ GPF + S+ GNRY L  I+ +S  CWIY LK KS+A   +     +   Q G Y    R+DRGGE+ +   + F    GII +     TP+ N   ERK   +  MA + +    L + +W  +   AVY+ NR P  K   ++T  E    +KP V H + FGC+ Y  +    RKK++ +
Sbjct:  329 WLWHLRYGHLGFSGLKLLSKTSMVKGL-PEINPPNQL-CEACIKGKQHRQSFKVG----RSGRAQRLLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLKEFKAMAEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPT-KSVKYMTPNEAWSGQKPGVGHFKIFGCIAYAHVPEHTRKKLDDR 579          
BLAST of mRNA_H-akashiwo_Contig1146.6.1 vs. uniprot
Match: A0A6V7PE18_ANACO (Uncharacterized protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7PE18_ANACO)

HSP 1 Score: 155 bits (391), Expect = 4.410e-39
Identity = 88/258 (34.11%), Postives = 129/258 (50.00%), Query Frame = 1
Query:   16 LWHLRMGHASTKFLSVMNSYSVVNGMVPYNSSDNELFCEPCVLAKAKRSPFGLPGVKIKEDRQVCLMDLISADLTGPFSVRSVTGNRYVLILIEHYSDYCWIYPLKNKSQATANVMTLFELLHNQLGTYPNKFRTDRGGEFYNDELQSFLSNKGIIAESGPASTPEYNMKQERKQLFLETMANAQLDASPLTKGYWDLSWVVAVYVSNRLPAHKDKGFLTRFELLWNKKPDVSHMRPFGCVGYCALSSANRKKMNPKS 789
            +WH R+GH S   L VM S ++VNG+    +  +   CE C   KA R PF     K K       +DL+ +DL GP S  S +G+RY+L+ ++ ++ Y W+Y +K KS+  +  +   E +   +       RTD GGEF ++E  SF   +GI  E   A TP+ N   ERK   L     + L A  L K  W      A YV N +P      F + +EL+W +KP+V H + FG   Y  +    R K++PK+
Sbjct:  372 IWHARLGHLSMDKLKVMVSKNLVNGLPNLATFGSSELCEGCQYGKAHRLPFDKSVTKSKAP-----LDLVHSDLMGPTSTPSYSGSRYMLLFVDDFTRYTWVYFVKEKSEVFSKFIEFKETVEGVVNRKIKCLRTDNGGEFTSNEFFSFCRQQGIKRELSCAYTPQQNGVAERKIRHLVETCKSWLHAKNLPKALWAEGMACAAYVINHVPLCPT-NFKSPYELMWGEKPNVKHFKVFGSTCYVHVPGNLRGKLDPKA 623          
BLAST of mRNA_H-akashiwo_Contig1146.6.1 vs. uniprot
Match: A0A0V0IV83_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0IV83_SOLCH)

HSP 1 Score: 154 bits (388), Expect = 9.740e-39
Identity = 92/258 (35.66%), Postives = 129/258 (50.00%), Query Frame = 1
Query:   16 LWHLRMGHASTKFLSVMNSYSVVNGMVPYNSSDNELFCEPCVLAKAKRSPFGLPGVKIKEDRQVCLMDLISADLTGPFSVRSVTGNRYVLILIEHYSDYCWIYPLKNKSQATANVMTLFELLHNQLGTYPNKFRTDRGGEFYNDELQSFLSNKGIIAESGPASTPEYNMKQERKQLFLETMANAQLDASPLTKGYWDLSWVVAVYVSNRLPAHKDKGFLTRFELLWNKKPDVSHMRPFGCVGYCALSSANRKKMNPKS 789
            LWHLR GH + K L ++    +V G+   +S D    CE C+  K  R  F +     K  R    ++LI ADL GP   +S+ G+RY L+ I+ YS   W+Y L++KS+          L+ NQ        R DRGGEF ++E   F    GI  E     TPE N   ERK   +  MA + L A  L   +W  +   ++Y+ N  P  K     T +E    +KP+VSH+R FGCV Y  +SS  R+K++ KS
Sbjct:  448 LWHLRYGHLNIKGLKLLGDKGMVLGLPKISSLD---LCEGCIYGKQTRKSFPVG----KAWRASKCLELIYADLCGPMQTKSLGGSRYFLLFIDDYSGMSWVYFLESKSETFEKFQKFKALVENQSSCCIKVLRKDRGGEFVSNEFNLFCETNGIHRELTTPYTPEQNGVAERKNRTVVEMARSMLQAKELANQFWAEAVAASIYLLNLSPT-KVVMNKTPYEAWHCRKPNVSHLRVFGCVAYALVSSQARQKLDEKS 697          
BLAST of mRNA_H-akashiwo_Contig1146.6.1 vs. uniprot
Match: A0A068B703_GOSBA (Polyprotein n=5 Tax=Gossypium TaxID=3633 RepID=A0A068B703_GOSBA)

HSP 1 Score: 153 bits (387), Expect = 1.410e-38
Identity = 86/261 (32.95%), Postives = 129/261 (49.43%), Query Frame = 1
Query:    4 NTKFLWHLRMGHASTKFLSVMNSYSVVNGMVPYNSSDNELFCEPCVLAKAKRSPFGLPGVKIKEDRQVCLMDLISADLTGPFSVRSVTGNRYVLILIEHYSDYCWIYPLKNKSQATANVMTLFELLHNQLGTYPNKFRTDRGGEFYNDELQSFLSNKGIIAESGPASTPEYNMKQERKQLFLETMANAQLDASPLTKGYWDLSWVVAVYVSNRLPAHKDKGFLTRFELLWNKKPDVSHMRPFGCVGYCALSSANRKKMNPK 786
            N  +LWHLR GH     L +++  ++VNG+   N  D    CE CV  K  R  F +     K  R    ++++  D++GP+ + S+ GNRY L  I+ YS  CW+Y LK KS+A         ++  Q G Y    R+DRGGE+     +SF  + GII +     TP+ N   ERK   +  MA + +    L + +W  +   AVY+ N+ P  K     T  E     KP V H++ FGC+ Y  +    RKK++ +
Sbjct:  480 NESWLWHLRYGHLGFSGLKLLSKTNMVNGLPSINHPDQ--LCEACVKGKQHRQKFEVG----KSRRARRPLEIVHTDISGPYDIESLGGNRYYLTFIDDYSRKCWVYFLKAKSEALEKFKEFKAMVEKQSGRYLKILRSDRGGEYTAKLYESFCKDHGIIHQLTARRTPQQNGVAERKNRTILDMARSMIKGKHLPRTFWAEAVECAVYLLNQCPT-KSVRHKTPEEAWSGHKPRVGHLKIFGCIAYAHVPEQQRKKLDDR 733          
BLAST of mRNA_H-akashiwo_Contig1146.6.1 vs. uniprot
Match: A0A6A3BY51_HIBSY (Histone acetyltransferase n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BY51_HIBSY)

HSP 1 Score: 152 bits (385), Expect = 2.760e-38
Identity = 86/258 (33.33%), Postives = 132/258 (51.16%), Query Frame = 1
Query:   13 FLWHLRMGHASTKFLSVMNSYSVVNGMVPYNSSDNELFCEPCVLAKAKRSPFGLPGVKIKEDRQVCLMDLISADLTGPFSVRSVTGNRYVLILIEHYSDYCWIYPLKNKSQATANVMTLFELLHNQLGTYPNKFRTDRGGEFYNDELQSFLSNKGIIAESGPASTPEYNMKQERKQLFLETMANAQLDASPLTKGYWDLSWVVAVYVSNRLPAHKDKGFLTRFELLWNKKPDVSHMRPFGCVGYCALSSANRKKMNPK 786
            +LWHLR GH     L +++  S+V G+ P  +  N+L CE C+  K  R  F + G   +  R    ++++  D+ GPF + S+ GNRY L  I+ +S  CWIY LK KS+A   +     +   Q G Y    R+DRGGE+ +   + F    GII +     TP+ N   ERK   +  MA + +    L + +W  +   AVY+ NR P  K   ++T  E    +KP V H++ FGC+ Y  +    RKK++ +
Sbjct:  328 WLWHLRYGHLGFSGLKLLSKTSMVKGL-PEINPPNQL-CEACIKGKQHRQSFEV-GRSWRARRP---LEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPT-KSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDR 578          
BLAST of mRNA_H-akashiwo_Contig1146.6.1 vs. uniprot
Match: A0A2P6RE45_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6RE45_ROSCH)

HSP 1 Score: 151 bits (382), Expect = 3.600e-38
Identity = 88/258 (34.11%), Postives = 128/258 (49.61%), Query Frame = 1
Query:   16 LWHLRMGHASTKFLSVMNSYSVVNGMVPYNSSDNELFCEPCVLAKAKRSPFGLPGVKIKEDRQVCLMDLISADLTGPFSVRSVTGNRYVLILIEHYSDYCWIYPLKNKSQATANVMTLFELLHNQLGTYPNKFRTDRGGEFYNDELQSFLSNKGIIAESGPASTPEYNMKQERKQLFLETMANAQLDASPLTKGYWDLSWVVAVYVSNRLPAHKDKGFLTRFELLWNKKPDVSHMRPFGCVGYCALSSANRKKMNPKS 789
            LWH R+GH +   L VM   ++V G+    +  ++  CE C   K+ R PFG     I + R    ++ I  DL GP    S +G RY+LIL++ +S + W+Y +K KS A +      E++   LG    + RTD GGEF +DE  SF    GI  E   A TP+ N   E K   L     + L A  L K  W    + A YV NRL    +    T +EL++ +KP V H + FG + Y  +  + R K++ K+
Sbjct:  447 LWHARLGHVNFDKLKVMVRKNLVKGLPSLTTFPSKEVCEGCQFGKSHRLPFG-----ISQSRSKAPLECIHGDLFGPTRTPSFSGLRYMLILVDDFSRFTWVYCIKQKSDAFSKFQEFKEIVEGVLGLKIKRLRTDNGGEFISDEFFSFCRWFGIRRELSCAETPQQNGIAEWKIRHLTETCRSWLHAKNLPKALWAEGMMCAAYVINRLHLSPN-NMKTPYELMFGEKPSVKHFKVFGSICYVHVPDSRRGKLDAKA 698          
BLAST of mRNA_H-akashiwo_Contig1146.6.1 vs. uniprot
Match: A0A182GNT8_AEDAL (Uncharacterized protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GNT8_AEDAL)

HSP 1 Score: 151 bits (382), Expect = 3.850e-38
Identity = 83/257 (32.30%), Postives = 132/257 (51.36%), Query Frame = 1
Query:   19 WHLRMGHASTKFLSVMNSYSVVNGMVPYNSSDNELFCEPCVLAKAKRSPFGLPGVKIKEDRQVCLMDLISADLTGPFSVRSVTGNRYVLILIEHYSDYCWIYPLKNKSQATANVMTLFELLHNQLGTYPNKFRTDRGGEFYNDELQSFLSNKGIIAESGPASTPEYNMKQERKQLFLETMANAQLDASPLTKGYWDLSWVVAVYVSNRLPAHKDKGFLTRFELLWNKKPDVSHMRPFGCVGYCALSSANRKKMNPKS 789
            WH R GH     +  M   ++ +G+V        L CEPC+  K  R+P      K   D    ++DL+  DL GP    + +GNR+++ +I+ +S Y  +Y L  KS+A   +M     +    G  P   R+D GGE+ N+ LQSF   +GI AE   A TP+ N   ER+  +L+ MA A L  + L K YW  + + A ++ NRLP+       T FE  + +KP++++++ FGC  +  +  + R K + K+
Sbjct:  412 WHRRFGHRDPAAVEKMVKENLCDGVV-VKDCGIRLTCEPCIEGKLSRTPIPKTAAKKTSD----VLDLVHTDLCGPMRTPTPSGNRFLMTVIDDHSRYAVVYLLAKKSEAPDKLMEYVRYVETLFGRKPKVVRSDSGGEYCNERLQSFFVREGIKAEYTTAYTPQQNGVAERRNRYLQEMATAMLIDAKLEKKYWGEAVMAAAHLQNRLPSRSVS--CTPFEKWFGRKPNLNYLKVFGCKAWVHVPDSKRGKFDSKA 661          
BLAST of mRNA_H-akashiwo_Contig1146.6.1 vs. uniprot
Match: A0A182G7X1_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G7X1_AEDAL)

HSP 1 Score: 151 bits (381), Expect = 8.290e-38
Identity = 84/257 (32.68%), Postives = 134/257 (52.14%), Query Frame = 1
Query:   19 WHLRMGHASTKFLSVMNSYSVVNGMVPYNSSDNELFCEPCVLAKAKRSPFGLPGVKIKEDRQVCLMDLISADLTGPFSVRSVTGNRYVLILIEHYSDYCWIYPLKNKSQATANVMTLFELLHNQLGTYPNKFRTDRGGEFYNDELQSFLSNKGIIAESGPASTPEYNMKQERKQLFLETMANAQLDASPLTKGYWDLSWVVAVYVSNRLPAHKDKGFLTRFELLWNKKPDVSHMRPFGCVGYCALSSANRKKMNPKS 789
            WH R GH     +  M   ++ +G+V        L CEPC+  K  R+P  +P    K+   V  +DL+  DL GP    + +GNR+++ +I+ +S Y  +Y L  KS+A   +M     +    G  P   R+D GGE+ N+ LQSF   +GI AE   A TP+ N   ER+  +L+ MA A L  + L K YW  + + A ++ NRLP+       T FE  + +KP++++++ FGC  +  +  + R K + K+
Sbjct:   49 WHRRFGHRDPAAVEKMVKENLCDGVV-VKDCGIRLTCEPCIEGKLSRTP--IPKTAAKKTSNV--LDLVHTDLCGPMRTPTPSGNRFLMTVIDDHSRYAVVYLLAKKSEAPDKLMEYVRYVETLFGRKPKVVRSDSGGEYCNERLQSFFVREGIKAEYTTAYTPQQNGVAERRNRYLQEMATAMLIDAKLEKKYWGEAVMAAAHLQNRLPSRSVS--CTPFEKWFGRKPNLNYLKVFGCKAWVHVPDSKRGKFDSKA 298          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1146.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V7Q0G3_ANACO6.630e-4234.50Integrase catalytic domain-containing protein n=1 ... [more]
UPI0016589FE92.210e-4134.98uncharacterized protein LOC118514016 isoform X1 n=... [more]
A0A6A2WSU7_HIBSY2.980e-3933.33Integrase catalytic domain-containing protein n=2 ... [more]
A0A6V7PE18_ANACO4.410e-3934.11Uncharacterized protein n=1 Tax=Ananas comosus var... [more]
A0A0V0IV83_SOLCH9.740e-3935.66Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
A0A068B703_GOSBA1.410e-3832.95Polyprotein n=5 Tax=Gossypium TaxID=3633 RepID=A0A... [more]
A0A6A3BY51_HIBSY2.760e-3833.33Histone acetyltransferase n=2 Tax=Hibiscus syriacu... [more]
A0A2P6RE45_ROSCH3.600e-3834.11Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A182GNT8_AEDAL3.850e-3832.30Uncharacterized protein n=2 Tax=Aedes albopictus T... [more]
A0A182G7X1_AEDAL8.290e-3832.68Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1146contigH-akashiwo_Contig1146:243650..244498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog400682.PAC_15703055
PFAMsRVT_2
Model size795
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.99e-33
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3ACW4@33154|Opisthokonta,3BVPH@33208|Metazoa
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size765
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387097.254887-UTR-H-akashiwo_Contig1146:243649..2436791681387097.254887-UTR-H-akashiwo_Contig1146:243649..243679Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1146 243650..243679 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387097.2724457-CDS-H-akashiwo_Contig1146:243679..2438181681387097.2724457-CDS-H-akashiwo_Contig1146:243679..243818Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1146 243680..243818 +
1681387097.2846575-CDS-H-akashiwo_Contig1146:243872..2444981681387097.2846575-CDS-H-akashiwo_Contig1146:243872..244498Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1146 243873..244498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1146.6.1prot_H-akashiwo_Contig1146.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1146 243680..244498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1146.6.1

>prot_H-akashiwo_Contig1146.6.1 ID=prot_H-akashiwo_Contig1146.6.1|Name=mRNA_H-akashiwo_Contig1146.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=255bp
MGHASTKFLSVMNSYSVVNGMVPYNSSDNELFCEPCVLAKAKRSPFGLPG
VKIKEDRQVCLMDLISADLTGPFSVRSVTGNRYVLILIEHYSDYCWIYPL
KNKSQATANVMTLFELLHNQLGTYPNKFRTDRGGEFYNDELQSFLSNKGI
IAESGPASTPEYNMKQERKQLFLETMANAQLDASPLTKGYWDLSWVVAVY
VSNRLPAHKDKGFLTRFELLWNKKPDVSHMRPFGCVGYCALSSANRKKMN
PKSC*
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mRNA from alignment at H-akashiwo_Contig1146:243650..244498+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1146.6.1 ID=mRNA_H-akashiwo_Contig1146.6.1|Name=mRNA_H-akashiwo_Contig1146.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=849bp|location=Sequence derived from alignment at H-akashiwo_Contig1146:243650..244498+ (Heterosigma akashiwo CCMP452)
GGTAATACAAAGTTCTTATGGCATCTAAGGATGGGTCATGCCAGTACAAA GTTTCTAAGTGTCATGAACTCTTACAGTGTTGTCAATGGCATGGTGCCTT ATAATAGTTCTGATAATGAATTATTTTGTGAGCCTTGTGTTTTGGCAAAG GCCAAGAGGTCACCATTTGGTAAAGTTCCTATTGTGAAAAGGGGCAAACT GACAGATGAACAAATTGAGCAAGGACTGCCTGGTGTCAAAATTAAAGAAG ACAGGCAAGTGTGTTTAATGGATCTCATATCTGCAGATCTCACTGGTCCT TTTTCTGTCAGATCAGTTACTGGAAATAGATATGTTCTTATACTTATAGA ACATTATTCTGATTATTGTTGGATCTATCCTCTCAAAAATAAGTCTCAAG CAACTGCCAATGTTATGACTTTATTTGAACTATTGCACAATCAGTTGGGT ACTTACCCTAATAAGTTCAGAACAGATAGAGGAGGGGAGTTTTATAATGA TGAACTTCAATCATTTTTATCCAACAAAGGAATTATTGCTGAATCAGGTC CTGCAAGTACTCCTGAGTACAACATGAAACAGGAGCGTAAACAGCTTTTC TTGGAGACTATGGCAAATGCACAGCTGGATGCATCTCCACTCACCAAAGG TTACTGGGACTTGAGTTGGGTTGTAGCTGTCTATGTTTCCAACAGACTAC CAGCTCATAAAGACAAAGGGTTTCTCACCAGGTTTGAGTTATTATGGAAT AAAAAACCTGATGTGTCACACATGAGGCCTTTTGGCTGTGTAGGGTACTG TGCTTTGTCATCAGCAAATAGAAAGAAAATGAATCCAAAAAGCTGTTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1146:243650..244498+

>mRNA_H-akashiwo_Contig1146.6.1 ID=mRNA_H-akashiwo_Contig1146.6.1|Name=mRNA_H-akashiwo_Contig1146.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=765bp|location=Sequence derived from alignment at H-akashiwo_Contig1146:243650..244498+ (Heterosigma akashiwo CCMP452)
ATGGGTCATGCCAGTACAAAGTTTCTAAGTGTCATGAACTCTTACAGTGT
TGTCAATGGCATGGTGCCTTATAATAGTTCTGATAATGAATTATTTTGTG
AGCCTTGTGTTTTGGCAAAGGCCAAGAGGTCACCATTTGGACTGCCTGGT
GTCAAAATTAAAGAAGACAGGCAAGTGTGTTTAATGGATCTCATATCTGC
AGATCTCACTGGTCCTTTTTCTGTCAGATCAGTTACTGGAAATAGATATG
TTCTTATACTTATAGAACATTATTCTGATTATTGTTGGATCTATCCTCTC
AAAAATAAGTCTCAAGCAACTGCCAATGTTATGACTTTATTTGAACTATT
GCACAATCAGTTGGGTACTTACCCTAATAAGTTCAGAACAGATAGAGGAG
GGGAGTTTTATAATGATGAACTTCAATCATTTTTATCCAACAAAGGAATT
ATTGCTGAATCAGGTCCTGCAAGTACTCCTGAGTACAACATGAAACAGGA
GCGTAAACAGCTTTTCTTGGAGACTATGGCAAATGCACAGCTGGATGCAT
CTCCACTCACCAAAGGTTACTGGGACTTGAGTTGGGTTGTAGCTGTCTAT
GTTTCCAACAGACTACCAGCTCATAAAGACAAAGGGTTTCTCACCAGGTT
TGAGTTATTATGGAATAAAAAACCTGATGTGTCACACATGAGGCCTTTTG
GCTGTGTAGGGTACTGTGCTTTGTCATCAGCAAATAGAAAGAAAATGAAT
CCAAAAAGCTGTTAA
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