mRNA_H-akashiwo_Contig1142.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1142.4.1
Unique NamemRNA_H-akashiwo_Contig1142.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1142.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1142contigH-akashiwo_Contig1142:60082..64441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size373
Hectar predicted targeting categorysignal anchor
Exons2
Cds size282
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387095.9511495-UTR-H-akashiwo_Contig1142:60081..601721681387095.9511495-UTR-H-akashiwo_Contig1142:60081..60172Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1142 60082..60172 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387095.9693627-CDS-H-akashiwo_Contig1142:60172..603981681387095.9693627-CDS-H-akashiwo_Contig1142:60172..60398Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1142 60173..60398 -
1681387095.9825473-CDS-H-akashiwo_Contig1142:64385..644411681387095.9825473-CDS-H-akashiwo_Contig1142:64385..64441Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1142 64386..64441 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1142.4.1prot_H-akashiwo_Contig1142.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1142 60173..64441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1142.4.1

>prot_H-akashiwo_Contig1142.4.1 ID=prot_H-akashiwo_Contig1142.4.1|Name=mRNA_H-akashiwo_Contig1142.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=94bp
TRELVVKDVLGWYQRSIDRRKEKTGRALFLWHYLSLVYWVITSIFFCHLC
IKTFPLLLFLKNHYLAGKRRVVGKYYALRGIKKVTSQYSFEEQ*
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mRNA from alignment at H-akashiwo_Contig1142:60082..64441-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1142.4.1 ID=mRNA_H-akashiwo_Contig1142.4.1|Name=mRNA_H-akashiwo_Contig1142.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=4360bp|location=Sequence derived from alignment at H-akashiwo_Contig1142:60082..64441- (Heterosigma akashiwo CCMP452)
ACCCGGGAGCTCGTGGTCAAGGACGTGCTCGGCTGGTACCAACGGTCGAT
CGACAGGTGGGGGGCGGAGCCCAGCCCAGCCCAGCCCTCCCCTCCCCTCC
CCTCCCCTCCCAGCCTGGCGCAAGCATCTTTTGATATTTTGGTGTACATG
GTGTTGTCGAGAAGAAGTTCACCATTATCGGCCAGAGTATAATAGTTTAC
CAGTATCGGCCGTTTGAAGGGGGCTTTACATGACGATGGACTAGACTTTG
TTGCCACTGCATTCTCGCCCAGTTGGTTTGGTAGAAGCAACTCGCACTTG
ACAATGTCAAGTGCGTTCTCACACAGTTGGTTTGTTGGAAACAACCCGCA
CGCTTTTACAAAGTGAACAAAACCTGATGACTTGATGATGTTGTGCGCTG
ACGCACAACAACAATGCTCACGGCTGCCCTTCCTGACAGCTGCTCTGGTG
CTGTGCTGGCAACAGCCATCCTGGATGTTGCCGTGCTGACTGTGATCACA
AGATCACGTGTTGTGAACCATGTTTTCCTTTCTCATCATTCCCACTTTTA
CATTAATCCACCCACAAAAGATCTTCTCATCTCATCTACACTTTGGGGGC
TGGGCACTTGTCCTTGCCCCCTTAGTCTTCCAGCTGGGCTGCCTAATGCA
GCTTTTACTCTTCACAAAGGTTATGAGGCCCTTACCACGCTTGAACGTCT
CTGCGTTCGCGCGGCCCGCTGGATTGTTTCGAGATCTCTGCCCGTCACTC
TATGTCCACTGGGGCTGTGGATACCCTTGAAGGCCATTCTGTGCTGCTCG
CCCTGACCTGACTCCGTGTCAATTCTGAACTGGGCGGCCTGGGCTAGAGT
CCCCGTCGTTTCCAATCGACCGGACTTGCCTGGATGGCTCGTGTTTTTCT
GGGGACTTTTGACACTATCATTCTTCCACCGTGCCCGAAAAGTTGTGCTC
CTTTTTGGAGCACGAGCGATTCGAGCTTCTTCTGATGTTTCCCTTCTGCT
CCTACTGCTGCCAACGGCGTTCGGCGCCCCGCTCTTCTGGACCCTGCTAG
CGATGGGCACCGTGAAGTGCTTTTTAGCCATCAGATCCTCCTCTCCTACG
CCACGGCCATTTGGTGGGTTCTTTCTAACCTAGGCGGCACACGACTGTGA
CCTCTGGATTCTGCTCTCGTCTTTTGGATAAACTGCTTTTGAACACGATT
ATGAACTTTTCTTAAACACGATGATCACGACGACGACAACACGGCTCCTT
CTCCCTCTTTGGTCAATCAAAAAGATTTTTCATTCCTTCTTCTGGATAAT
TTGGACTTTGCACATCTCTCTGGAGCGCTTTCTGTGAGCTCTTGACTCTC
TCTGCCACGTTCATTTACTCAGCACTAGAATCAACAGTGGGGGAAGTCAT
TACCCCCTGCTGCCAGGGCCTGGAGAATCTTGATGCACTGGTTTTCGATT
AAGTTTATGCTGCTGCCAAAATCTTCGATGACGACTGTTACTCTCTTCTC
TCTGTGCTTTGACTCAACTTGGCATTTGGGGCACCCTTACCCTCTTGGGC
AGTTTAGATATAGATTGGGCGACTACCTGCCTCTAAATAGTGGTAGATGA
AATGGTGGATTCTTGTGCCTGCACATCTGGTGGGCCCTTTTTTCTCACAT
CGTCGCTCAACTGTGGTGGGTCTCTTGAGCTCTCGAGTTCACTTGCCTCC
TCACAACTGGTGGGCTTTCTTCTCCTCACAACTTCTGCTTGCCTGTGGTG
GGCCTTTGTTACAAATGCATTCTCGCTCAGTTGGTTTGGTAGAAGCAACC
CGCACTTGACAATGTCAAGTGCATTCTCACACAGTTGGTTTGTTGGAAAC
AACCCGCACGCTTTTACAAAGTGAACAAAACCTGATGACTTGGTGATGTT
GTGCGCTGACGCACAACAACAATGCTCACGGCTGCCCTTCCAGACAGCTG
CTCTGGTGCTGTGCTGGCAACAGCCATCCTGGATGTTGCCGTGCTGACTG
TGATCACAAGATCACGTATTGTGAACCATTTTTTCCTCTCTTATCATTCC
CACTTTTACATTAATCCACCCACAAAAGATCTTCTATAGTCTTATCTGCA
CTTTGGGGGCTGGGCACTTGTCCTTGCACCCTTAGTCTTCCAGCTGGGCT
GCCTAATGCAGTTTAACTTCTACACAAAGCTAGATATTGTGAAAAGAAGT
TGCAGTGAGTTGTTAAGGGTTGCTGTGACTTGCTGCGCTTGCATGCATGG
GAATCATTCTGAAAGAGGCAGCATGGAGAAGAAGAAGGGCCGAGCATCTC
ATATCAGTGAGGTCGTTGTACGGCCCTTTTCATTTTCCCTTCATTTTTTT
TCAGGTACAAAAAATGATAATATACTTTAGATCTGGCATCATCCGTTCAC
ACAGCAACCACAGTGCAGTTGTTTAGGTTCTTGACTTGTCCCCAGTCACA
GACCCTGGGTTCAATCCCTGTTGACAACCATCTTAGTTGGCAATACAGGC
TTTTCTTCTACTTCTTCTACACTCAGACAAGAAGAAGTTGCAGCTCTCTT
CTGATTGGTTGTAGGCACAACAAGCATGGAGTGTGCTCTGTCTGAGTAAT
CAGGAAGAAGAAGTGACCAGCACAAGAAGAAGAAGGAGCATGGTCATCTA
CAGCACTGAGAAACACTACTGTTGTTCTTATATAACTCTTGTTGTTGTTT
GGAAGCAGCAGGAGCTGCTGAATTATCAATTCACTTTCACTATGATGATG
ATGATGATGTTTATGTTAGTTTCAAGCCTAACCTTTCAAATCACTTTCAC
TATATCTGAATTTACATACAATAATATTTTTTCAAGAAGGCTTGCCTTCC
ACACACAGGCCTTTGGCCTCCTTTCTCTCACATGGCATTGTACCACTAGT
TCACTACAAGAGGCATTCTTATTTTCAAAGGTTACGGGCTTTCTCATGCA
GAAGTTCTCTGTTCCCTCCTTTTTGTTTTTTGCCGAGCCGCCAGCACGGG
GACTTAGCAGCTATCTTGCTGGACCAAGTCAAAAAATTTCGAAAACGACG
GGTATATATATCTAACCGCTGGAAAGTATCTTTTTCATCCTCAATTTCTG
GATGGGATGCGTTTTTCAGATTTGCTTTGGTTTCTTGTCTCGAAATGGAT
CTTACACTGCTGTAATCAATTACAAGGTCTCATGAACCAAACAGAATGCT
CTCTCTGCAATTGCGACACTTACTCTGCTCTGGTGCGGTGAAAACAAGGC
TCTGTGAATTTTCAAGCTTATTACTGCTGGGATTGCGGACAACGCATACC
CCAGAATAAAGCGCGATTCTCGCTTTGCACACCCAAGTCCAGACACTCTG
CCGCTTCTTGTGGATTTTGTTCATCCTGTTCCACAAAAATTGGCCTGATT
TTCTTTGTTCAACTTTGGAAGCTTCTTGTGTAATATCTGGTCTCTTTGAG
GTCATTCTTTTAATTCTCTTTTCTTTGAAAGTTTGAGGCGTATAAAGCAA
TCTCTTTTAGGGAAATGGGTGCATTGGCTATGTTTGCGGGGCAAACCCTA
GCTTTTATTTTTTAATTTTGGCTCTTATTTATTTTACAATACTTAGTCCG
GCACACAATTAAACGACTAATTGACGTAGGACACTTATGCAACCGAATCA
GACATTTACGCAGACCCCCGGAAATCGATGGGACACTTGCGAAGGACACT
TACAAAGACCTTTGTTGAGTGAAAAATCGGACATCTGGAAGAATTGCAAT
ATCGAACAATTGAAGAGGTAAAAGGGGACATGAAGATAGGATTATAATTG
CGGAACAGTCGCTTAATTGTGTGAGTTAAATTTATTTTCTTTTATAATTA
AACTACGAAGGAATTAAGACAGCCAACCAATCATTTGGCAGCCCCCTTTT
TCTGGATAAATCTGCACCTATCTATACTACCTAGATCCCGTGTCATCATT
CAATGTTTATTATCATGAACAACAACTATCATCTACATTACCACTCCTTC
TCCGTTTTCATGATGGTGCCGCTTACTCACAATCTCTTACCAGGCGGAAA
GAAAAGACGGGACGGGCGCTCTTCCTTTGGCACTACCTGAGTCTGGTCTA
CTGGGTGATCACGTCAATTTTCTTCTGCCATCTTTGCATAAAGACCTTCC
CTCTGCTGCTGTTCCTGAAGAACCACTACCTGGCCGGCAAACGGCGGGTG
GTGGGCAAGTACTATGCTCTGCGTGGGATCAAAAAGGTTACCTCGCAGTA
CTCGTTTGAGGAGCAATGACGACCGCTGGTTATTATTATGCCGATCTGGT
TGGTGTGTCCCTTTTAGGTATCGATAGAGTACACACCACAGAGATGATGA
TTGTTGGTGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1142:60082..64441-

>mRNA_H-akashiwo_Contig1142.4.1 ID=mRNA_H-akashiwo_Contig1142.4.1|Name=mRNA_H-akashiwo_Contig1142.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=282bp|location=Sequence derived from alignment at H-akashiwo_Contig1142:60082..64441- (Heterosigma akashiwo CCMP452)
ACCCGGGAGCTCGTGGTCAAGGACGTGCTCGGCTGGTACCAACGGTCGAT
CGACAGGCGGAAAGAAAAGACGGGACGGGCGCTCTTCCTTTGGCACTACC
TGAGTCTGGTCTACTGGGTGATCACGTCAATTTTCTTCTGCCATCTTTGC
ATAAAGACCTTCCCTCTGCTGCTGTTCCTGAAGAACCACTACCTGGCCGG
CAAACGGCGGGTGGTGGGCAAGTACTATGCTCTGCGTGGGATCAAAAAGG
TTACCTCGCAGTACTCGTTTGAGGAGCAATGA
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