mRNA_H-akashiwo_Contig114.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig114.2.1
Unique NamemRNA_H-akashiwo_Contig114.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig114.2.1 vs. uniprot
Match: A0A4D9DGT0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DGT0_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.180e-11
Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:   70 RSFATAAAVGKPVEKTFAQIWLSDQGAYPVIGIISGAVALCTAFGLNFMATHPDVRIVKSKRTAILRD 273
            R+ +T+   G    K+F   WL D+GA+PVIGII GA+  C +F  N +  HPDVRI  SKR A +RD
Sbjct:   16 RTLSTSVPSGVRYGKSFGATWLGDKGAWPVIGIIGGALVFCGSFISNKIMFHPDVRITPSKRNADIRD 83
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BLAST of mRNA_H-akashiwo_Contig114.2.1 vs. uniprot
Match: W7TS82_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TS82_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.340e-9
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:   70 RSFATAAAVGKPVEKTFAQIWLSDQGAYPVIGIISGAVALCTAFGLNFMATHPDVRIVKSKRTA 261
            R+ +T+   G    K+F+  WL D+GA+PVIGII GA+  C +F  N +  HPDVRI  SKR A
Sbjct:   36 RTLSTSVPSGVRYGKSFSATWLGDKGAWPVIGIIGGALVFCGSFISNKIMFHPDVRITPSKRNA 99
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BLAST of mRNA_H-akashiwo_Contig114.2.1 vs. uniprot
Match: A0A7S2S5X7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5X7_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.080e-8
Identity = 28/53 (52.83%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:   97 GKPVEKTFAQIWLSDQGAYPVIGIISGAVALCTAFGLNFMATHPDVRIVKSKR 255
            G   EK+F +IWLSD G YPVIGIIS A   C  +    + T+PD+RI K KR
Sbjct:   52 GAVQEKSFKEIWLSDPGTYPVIGIISFACLFCGGYYSYNILTNPDIRITKGKR 104
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BLAST of mRNA_H-akashiwo_Contig114.2.1 vs. uniprot
Match: A0A6H5KK83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK83_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.870e-7
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:  112 KTFAQIWLSDQGAYPVIGIISGAVALCTAFGLNFMATHPDVRIVKSKRTAILR 270
            K+F + WLSD GA+PVIG+I  AV   T +  + +ATHPDVRI ++ R   +R
Sbjct:   71 KSFKEAWLSDIGAWPVIGVIGFAVTFVTYWSFSTLATHPDVRINRTIRETTIR 123
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BLAST of mRNA_H-akashiwo_Contig114.2.1 vs. uniprot
Match: D7FSK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK8_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 8.880e-6
Identity = 22/53 (41.51%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:  112 KTFAQIWLSDQGAYPVIGIISGAVALCTAFGLNFMATHPDVRIVKSKRTAILR 270
            K+F + WLSD+GA+PV+G+I  A+   T +  + + T+PDVRI ++ R   +R
Sbjct:   45 KSFKEAWLSDKGAWPVMGVIGFAITFVTYWSFSTLLTNPDVRINRTIRETTIR 97
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BLAST of mRNA_H-akashiwo_Contig114.2.1 vs. uniprot
Match: W4FJH4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FJH4_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.060e-5
Identity = 21/47 (44.68%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:  115 TFAQIWLSDQGAYPVIGIISGAVALCTAFGLNFMATHPDVRIVKSKR 255
            TFAQ WLSD  AYP+I +I GA+ L T   + +++  P+V   K+ R
Sbjct:    8 TFAQAWLSDTAAYPIIAVIGGALGLTTFSSIRYLSASPEVHFNKANR 54
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BLAST of mRNA_H-akashiwo_Contig114.2.1 vs. uniprot
Match: A0A1V9Z9E9_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z9E9_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 7.410e-5
Identity = 23/53 (43.40%), Postives = 31/53 (58.49%), Query Frame = 1 
Query:  115 TFAQIWLSDQGAYPVIGIISGAVALCTAFGLNFMATHPDVRIVKSKRTAILRD 273
            TFAQ WL D  A+PVIG+I GA AL     + ++   P V   K  R++ +RD
Sbjct:    9 TFAQAWLKDTAAWPVIGVIVGACALSAGASVRYLTKCPHVHWNKENRSSPIRD 61
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig114.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A4D9DGT0_9STRA1.180e-1148.53Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TS82_9STRA1.340e-948.44Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S2S5X7_9STRA2.080e-852.83Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6H5KK83_9PHAE2.870e-749.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSK8_ECTSI8.880e-641.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W4FJH4_9STRA1.060e-544.68Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A1V9Z9E9_9STRA7.410e-543.40Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig114contigH-akashiwo_Contig114:56870..57420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog112098.XP_008615790.1
PFAMsB12D
Model size551
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons1
Evalue8.63e-07
EggNOG OGs2CYHD@1|root,2S4ED@2759|Eukaryota
DescriptionNADH-ubiquinone reductase complex 1 MLRQ subunit
Cds size249
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387094.7953892-UTR-H-akashiwo_Contig114:56869..568961681387094.7953892-UTR-H-akashiwo_Contig114:56869..56896Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig114 56870..56896 +
1681387094.8165295-UTR-H-akashiwo_Contig114:57145..574201681387094.8165295-UTR-H-akashiwo_Contig114:57145..57420Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig114 57146..57420 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387094.8068733-CDS-H-akashiwo_Contig114:56896..571451681387094.8068733-CDS-H-akashiwo_Contig114:56896..57145Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig114 56897..57145 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig114.2.1prot_H-akashiwo_Contig114.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig114 56897..57145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig114.2.1

>prot_H-akashiwo_Contig114.2.1 ID=prot_H-akashiwo_Contig114.2.1|Name=mRNA_H-akashiwo_Contig114.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=83bp
MNAAIASLRKTAVSRSFATAAAVGKPVEKTFAQIWLSDQGAYPVIGIISG
AVALCTAFGLNFMATHPDVRIVKSKRTAILRD*
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mRNA from alignment at H-akashiwo_Contig114:56870..57420+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig114.2.1 ID=mRNA_H-akashiwo_Contig114.2.1|Name=mRNA_H-akashiwo_Contig114.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=551bp|location=Sequence derived from alignment at H-akashiwo_Contig114:56870..57420+ (Heterosigma akashiwo CCMP452)
CATTTCATAGAAATCATACTCTACAGGATGAACGCTGCTATCGCATCCCT
TAGAAAGACTGCCGTTTCCCGGTCCTTCGCGACTGCAGCAGCCGTGGGCA
AGCCAGTTGAGAAGACATTCGCCCAGATCTGGCTCTCTGATCAGGGTGCA
TACCCTGTCATTGGCATCATCTCTGGCGCTGTGGCTCTATGCACTGCCTT
TGGCCTTAACTTCATGGCCACTCACCCTGATGTCAGAATCGTCAAGTCAA
AGAGAACTGCCATTCTCCGCGACTAAGTTTTAGCTCTTTTCCTCTGGAGT
GTTTTTTTCTTCCGTGTAATGCTGTTGTGCCAATGAATGACTGTCTGCAA
CTCCGTGGAACTAGTTCGTGCCTTTCTTGACCCCAGGTCTGACTTTACGC
TGGTTCCAAACACCCGACATACATATTTTTCTTCTTCTCCCGGTGCCTCA
CTTGCAGCCAGGACTGTCGAGAAGACTGCTCAACATTTCTCTCTCGGCAG
TGGTCTAACAAAAAAATAGCAGATGATAGAGTCCTTCTGTTTGATGATTC
A
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Coding sequence (CDS) from alignment at H-akashiwo_Contig114:56870..57420+

>mRNA_H-akashiwo_Contig114.2.1 ID=mRNA_H-akashiwo_Contig114.2.1|Name=mRNA_H-akashiwo_Contig114.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=249bp|location=Sequence derived from alignment at H-akashiwo_Contig114:56870..57420+ (Heterosigma akashiwo CCMP452)
ATGAACGCTGCTATCGCATCCCTTAGAAAGACTGCCGTTTCCCGGTCCTT
CGCGACTGCAGCAGCCGTGGGCAAGCCAGTTGAGAAGACATTCGCCCAGA
TCTGGCTCTCTGATCAGGGTGCATACCCTGTCATTGGCATCATCTCTGGC
GCTGTGGCTCTATGCACTGCCTTTGGCCTTAACTTCATGGCCACTCACCC
TGATGTCAGAATCGTCAAGTCAAAGAGAACTGCCATTCTCCGCGACTAA
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