mRNA_H-akashiwo_Contig114.18.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig114.18.1
Unique NamemRNA_H-akashiwo_Contig114.18.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig114.18.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 526 bits (1356), Expect = 3.080e-187
Identity = 256/281 (91.10%), Postives = 270/281 (96.09%), Query Frame = 1
Query:    1 MELHDHLVSLGFQRSGHESCLYTRRDGGSELMVAVYVDDLVISGSSQAIVSDFKQYLASKYDLTDQGGLTQILGIKVVRDKRGKCFYLSQTSFIKDALVKFGLDYLPACKTPIDHTVDLTPTPGFEAKLSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYIKGTQSESLRLGGDLVLRAYSDADFCNDRIDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAELGCPQHDPTPVVEDN 843
            MELHDHL SLGF+RSGHESCLY  RDGG+ELMVAVYVDDLVISGSSQA+VS+FKQ LASKY LTDQG LTQILGIKVVRDKR KCF+LSQTSFIKDAL KFGLDYLPACKTP+DHTVDLTPTPGF+A+LSDANLYRSMVGTLAWVANWTRPELAF VHKLQRTQ NPEPKHFEAVQRAFRY+KGTQSESLRLGGDLVLRA+SD+DFCNDR+DGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLL E+GCPQH+PTPVVEDN
Sbjct:    1 MELHDHLESLGFKRSGHESCLYIHRDGGNELMVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDN 281          
BLAST of mRNA_H-akashiwo_Contig114.18.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 337 bits (865), Expect = 7.590e-114
Identity = 165/182 (90.66%), Postives = 173/182 (95.05%), Query Frame = 1
Query:    1 MELHDHLVSLGFQRSGHESCLYTRRDGGSELMVAVYVDDLVISGSSQAIVSDFKQYLASKYDLTDQGGLTQILGIKVVRDKRGKCFYLSQTSFIKDALVKFGLDYLPACKTPIDHTVDLTPTPGFEAKLSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYI 546
            MELHDHL SLGF+RSGHESCLY  RDGG+ELMVAVYVDDLVISGSSQAIVS+FKQ LASKY+LTDQG LTQILGIKVVRDKR KCF+LSQTSFIKDAL KFGLDYLPACKTPIDHTVDLTPTPGF+A+LSDANLYRSMVGTLAWVANWTRPELAF VHKLQRTQ NPEPKHFEAVQRAFRY+
Sbjct:   87 MELHDHLESLGFKRSGHESCLYIHRDGGNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268          
BLAST of mRNA_H-akashiwo_Contig114.18.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 219 bits (557), Expect = 2.040e-61
Identity = 111/282 (39.36%), Postives = 181/282 (64.18%), Query Frame = 1
Query:    7 LHDHLVSLGFQRSGHESCLYTRRDG-GSELMVAVYVDDLVISGSSQAIVSDFKQYLASKYDLTDQGGLTQILGIKVVRDKRGKCFYLSQTSFIKDALVKFGLDYLPACKTPIDHTVDLTPTPGFEAKLS--DANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYIKGTQSESLRLGGDLVLRAYSDADFCNDRIDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAELGCPQHDPTPVVEDN 843
            L+  L+  G+ R+G++SC+Y++    G + +++VYVDD+V++ S ++ +S  K+ ++  Y+++D G +  ILGIKV RD+  +   LSQ SFI++A  KF +        P++  +D+        +LS  +A  +RS+VGT+ W+A WT PE+A+++H L +  ++P      A     RY+  T+ + + LGG L L AY+DADFC++R  G+S +G+ +FLG +PI+WSS++Q  VT +T EAEY++LR+AV D+MWL+ LL  LG  Q    P+ EDN
Sbjct:  647 LNGFLLQQGYTRNGYDSCVYSKVSSTGGKTLISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQ-GCVPIYEDN 927          
BLAST of mRNA_H-akashiwo_Contig114.18.1 vs. uniprot
Match: A0A507DKM5_9FUNG (DNA-directed DNA polymerase (Fragment) n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DKM5_9FUNG)

HSP 1 Score: 202 bits (514), Expect = 2.000e-59
Identity = 116/291 (39.86%), Postives = 172/291 (59.11%), Query Frame = 1
Query:    7 LHDHLVSLGFQRSGHESCLYTRR--DGGSELMVAVYVDDLVISGSSQAIVSDFKQYLASKYDLTDQGGLTQILGIKVVRDKRGKCFYLSQTSFIKDALVKFGLDYLPACKTPIDHTVDLTPTPGFEAKLS---DANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYIKGTQSESLRLGGDLV-LRAYSDADFCNDRIDGKSVTGYILFLGDA-PIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAELGCPQH-----DPTPVVEDN 843
            LH  L SLGF+R  +++ +Y R      S   ++VYVDDL+I   +++ +S  K  L +++++TD G +   LG++V RD      YL Q S++ D L +FG+       TP+D T  L P      K S       YR +VG+L ++   TRP++A AV  L R  SNP P+H +A +R  RY++GT   SL +GG+ V L  YSDAD+ N+ ID +S+TGY+ ++G+A P+ W+SK Q  V  S+ EAEY+AL  A ++ +WL SLL EL  P++      PT + EDN
Sbjct:   16 LHKELTSLGFKRLANDNAVYIRTLPKSDSSQYISVYVDDLLIFAKTKSEISSIKTSLHNEFNMTDLGEVNHYLGMRVRRDYSRHVIYLDQESYVNDILERFGMQDCKPVNTPMDRT-KLEPYEVENTKTSPNPQEGEYRKIVGSLVYLMICTRPDIAVAVSMLSRFASNPSPQHLQAAKRVLRYLRGTSDYSLCIGGNNVTLHGYSDADWGNNIIDRRSITGYLFYIGNAGPVTWASKRQPTVALSSTEAEYMALSFATQETIWLCSLLQELQIPEYLDENARPTTIYEDN 305          
BLAST of mRNA_H-akashiwo_Contig114.18.1 vs. uniprot
Match: A0A2P4YNZ8_9STRA (Retrovirus-related pol Polyprotein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YNZ8_9STRA)

HSP 1 Score: 196 bits (498), Expect = 5.880e-58
Identity = 105/282 (37.23%), Postives = 165/282 (58.51%), Query Frame = 1
Query:   16 HLVSLGFQRSGHESCLYTRRDGGSELMVAVYVDDLVISGSSQAIVSDFKQYLASKYDLTDQGGLTQILGIKVVRDKRGKCFYLSQTSFIKDALVKFGLDYLPACKTPIDHTVDLT----PTPGFEAKLSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYIKGTQSESLRLGGDL--VLRAYSDADFCNDRIDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAELGCPQHDPTPVVEDN 843
            HL ++GF+      C+YTR +G SE +V +YVDD++I+   + I++  K  +A K+ + D G    ILGI++  D   K   +SQ ++ +  + KFGL+      T +D +V LT    P    +     +  YRS+VG+L ++A  TRP++A AV KL R   NP+ +H++A  +  RY+  T+  ++   G +   L AYSDAD+  +R D +SV+G +L +  AP+VW S  Q  V  S+ EAEY+AL   +K+++W+R LL  +G  QH PT + EDN
Sbjct:    4 HLKTMGFKAGDAGPCVYTRGEGDSECIVCLYVDDMLIASREKDIIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERKALTISQRAYTEPIINKFGLENAKPSLTSLDPSVHLTKADEPQNADDKAKMKSKPYRSLVGSLMYLACGTRPDIAVAVAKLSRYLENPDHRHWDAGIKVVRYLMKTKDAAITYDGRMGTELTAYSDADWAGNRDDRRSVSGVMLMMCGAPVVWRSTFQKTVALSSTEAEYMALSDCIKEVVWMRRLLKNIGAAQHGPTVIYEDN 285          
BLAST of mRNA_H-akashiwo_Contig114.18.1 vs. uniprot
Match: A0A2N9HCU5_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HCU5_FAGSY)

HSP 1 Score: 202 bits (515), Expect = 1.380e-55
Identity = 113/277 (40.79%), Postives = 158/277 (57.04%), Query Frame = 1
Query:   19 LVSLGFQRSGHESCLYTRRDGGSELMVAVYVDDLVISGSSQAIVSDFKQYLASKYDLTDQGGLTQILGIKVVRDKRGKCFYLSQTSFIKDALVKFGLDYLPACKTPIDHTVDLTPTPGFEAKLSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYIKGTQSESLRLGGD--LVLRAYSDADFCNDRIDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAELGCPQHDPTPVVEDN 843
            +   GF  S ++S L+ R    S  ++ +YVDD++I+G   A + D +++L+  +++ D G L+  LG++V     G  +YLSQ  +  D L K GL       TP++  V L PT G    LSDA LYR +VG+L ++   TRP+LA+AVH + +  S P   H+ AV R  RYIKGT    L       L LRAY+DAD+  D ID +S TGY   LG + I W SK Q  V  S+ EAEY AL  A  +++WLR LL ++G PQ   TP+  DN
Sbjct:  696 VAQQGFTPSSYDSALFIRHTSTSIALILLYVDDMIITGDDTAGIRDLQKFLSQHFEMKDLGTLSYFLGLEVTSSSDG--YYLSQAKYASDLLSKAGLTDSKTVFTPLELNVKLNPTDG--EPLSDATLYRQLVGSLIYLTV-TRPDLAYAVHLVSQFMSAPRSTHYAAVLRILRYIKGTLFHGLHFSAQSSLELRAYADADWAGDPIDRRSTTGYCFLLGSSLISWRSKKQSVVARSSTEAEYRALADATSELLWLRWLLTDMGAPQTTSTPIHCDN 967          
BLAST of mRNA_H-akashiwo_Contig114.18.1 vs. uniprot
Match: A0A6A3HKQ8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HKQ8_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.080e-54
Identity = 106/283 (37.46%), Postives = 166/283 (58.66%), Query Frame = 1
Query:   16 HLVSLGFQRSGHESCLYTRRDGGSELMVAVYVDDLVISGSSQAIVSDFKQYLASKYDLTDQGGLTQILGIKVVRDKRGKCFYLSQTSFIKDALVKFGLDYLPACKTPIDHTVDLTP-----TPGFEAKLSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYIKGTQSESLRLGGDL--VLRAYSDADFCNDRIDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAELGCPQHDPTPVVEDN 843
            HL S+GF+ +  + C+YTR +G  E +V +YVDD++I+   + +++  K  +A K+ + D G    ILGI++  D   +   +SQ ++ +  + KFG +    C TP++  V LT      T   +AK+  +  YRS+VG+L ++A  TRP+++ AV KL R   NP  KH++A  +  RY+  T+   +   G L   L AYSDAD+  +R D +SV+G +L L  AP+VW S  Q  V  S++EAEY+AL   VK+ +W+R LL ++G  Q   T + EDN
Sbjct:   78 HLKSMGFEPADADPCVYTRGEGEDECIVCLYVDDMLIASRQKTVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQLTKADEPQTEEVKAKMK-SKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSIEAEYMALSDCVKECVWMRRLLEDIGPEQVGATVIYEDN 359          
BLAST of mRNA_H-akashiwo_Contig114.18.1 vs. uniprot
Match: A0A2K3MW90_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MW90_TRIPR)

HSP 1 Score: 199 bits (505), Expect = 3.630e-54
Identity = 110/277 (39.71%), Postives = 159/277 (57.40%), Query Frame = 1
Query:   19 LVSLGFQRSGHESCLYTRRDGGSELMVAVYVDDLVISGSSQAIVSDFKQYLASKYDLTDQGGLTQILGIKVVRDKRGKCFYLSQTSFIKDALVKFGLDYLPACKTPIDHTVDLTPTPGFEAKLSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYIKGTQSESLRLGGD--LVLRAYSDADFCNDRIDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAELGCPQHDPTPVVEDN 843
            L   GF  S H+S L+TRR     +++ +YVDD++I+G  +  +S  +QYL+  +++ D G L+  LG++V +D  G  +YLSQ  +  D L + G+       TP++    LTP  G    L DA  YR +VG+L ++   TRP++A+AVHK+ +  + P   HF AV R  RY+KGT    LR   +  LVL  YSDAD+  D  D  S TGY  FLG + I W SK Q  V+ S+ E+EY AL  A  +++WLR LL ++G  Q   T +  DN
Sbjct:  781 LTQFGFLSSPHDSALFTRRSDSGIVILLLYVDDMIITGDDKTGISALQQYLSQHFEMKDLGSLSYFLGLEVSQDSDG--YYLSQAKYASDLLSRAGITDCKTELTPLEVNCKLTPLDG--TPLEDATRYRQLVGSLVYLTV-TRPDIAYAVHKVSQFMAAPRSSHFSAVLRIIRYVKGTLFHGLRFSANSSLVLSGYSDADWGGDPTDRCSTTGYCFFLGSSLISWRSKKQTVVSRSSTESEYRALADAASELLWLRWLLEDMGVTQSSATTLHCDN 1052          
BLAST of mRNA_H-akashiwo_Contig114.18.1 vs. uniprot
Match: A0A6A3VCN8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3VCN8_9STRA)

HSP 1 Score: 188 bits (478), Expect = 5.850e-54
Identity = 104/282 (36.88%), Postives = 163/282 (57.80%), Query Frame = 1
Query:   16 HLVSLGFQRSGHESCLYTRRDGGSELMVAVYVDDLVISGSSQAIVSDFKQYLASKYDLTDQGGLTQILGIKVVRDKRGKCFYLSQTSFIKDALVKFGLDYLPACKTPIDHTVDLTPTPGFEAKLSDANL----YRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYIKGTQSESLRLGGDL--VLRAYSDADFCNDRIDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAELGCPQHDPTPVVEDN 843
            HL S+GF+ +  + C+YTR +G  E +V +YVDD++I+   +A+++  K  +A K+ + D G    IL I++  D   +   +SQ ++ +  + KFG +    C TP++  V LT     + +   A +    YRS+VG+L ++A  TRP+++ AV KL R   NP  KH++A  +  RY+  T+   +   G L   L AYSDAD+  +R D +SV+G +L L  AP+VW S  Q  V  S+ EAEY+AL   VK+ +W+R LL ++G  Q   T + EDN
Sbjct:   23 HLKSMGFEPADADPCVYTRGEGEDECIVRLYVDDMLIASRQKAVIASEKAGIAEKFRIKDMGRARFILSIEIDYDIERRTLGISQKAYTESIIKKFGQENTKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATVIYEDN 304          
BLAST of mRNA_H-akashiwo_Contig114.18.1 vs. uniprot
Match: UPI000CD8E793 (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD8E793)

HSP 1 Score: 189 bits (479), Expect = 6.960e-54
Identity = 109/277 (39.35%), Postives = 159/277 (57.40%), Query Frame = 1
Query:   19 LVSLGFQRSGHESCLYTRRDGGSELMVAVYVDDLVISGSSQAIVSDFKQYLASKYDLTDQGGLTQILGIKVVRDKRGKCFYLSQTSFIKDALVKFGLDYLPACKTPIDHTVDLTPTPGFEAKLSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYIKGTQSESLRLGG--DLVLRAYSDADFCNDRIDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAELGCPQHDPTPVVEDN 843
            + SLGF  S ++S L+T+      +++ +YVDD++I+GS    + D KQ L+S +++ D G L   LG++V+    G   YLSQ  +  D + + G+       TP+D    L+P  G  + LSD  LYR +VG+L ++   TRP+LAFAVH + +  ++P   H+ AV R  RYIKGT    L       L LRA+SDAD+  D  D +S TG+  FLGD  I W SK Q  V  S+ EAEY AL    ++++WLR LL+++G     PT +  DN
Sbjct:   56 IQSLGFTASNYDSGLFTKTTTSGTILLILYVDDMIITGSDAHGILDLKQSLSSYFEMKDLGLLHYFLGLEVLPHDTG--IYLSQAKYASDIISRAGITDCKVANTPLDPNFHLSPGDG--SLLSDPTLYRQLVGSLIYLTV-TRPDLAFAVHIVSQFMASPRTTHYIAVLRILRYIKGTIFHGLYFSSTSSLELRAFSDADWDGDITDRRSTTGFCFFLGDLLISWRSKKQSLVARSSTEAEYRALADTTQELVWLRWLLSDMGLSLSSPTVIWCDN 327          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig114.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK3.080e-18791.10Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6S2_HETAK7.590e-11490.66Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y1P1_HETAK2.040e-6139.36Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A507DKM5_9FUNG2.000e-5939.86DNA-directed DNA polymerase (Fragment) n=1 Tax=Pow... [more]
A0A2P4YNZ8_9STRA5.880e-5837.23Retrovirus-related pol Polyprotein (Fragment) n=1 ... [more]
A0A2N9HCU5_FAGSY1.380e-5540.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3HKQ8_9STRA1.080e-5437.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2K3MW90_TRIPR3.630e-5439.71Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3VCN8_9STRA5.850e-5436.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI000CD8E7936.960e-5439.35uncharacterized mitochondrial protein AtMg00810-li... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig114contigH-akashiwo_Contig114:1250302..1251144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog67593.Physo140614
PFAMsRVT_2,Retrotran_gag_2,rve
Model size843
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.59e-52
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHHC@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size843
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387095.1947262-CDS-H-akashiwo_Contig114:1250301..12511441681387095.1947262-CDS-H-akashiwo_Contig114:1250301..1251144Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig114 1250302..1251144 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig114.18.1prot_H-akashiwo_Contig114.18.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig114 1250302..1251144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig114.18.1

>prot_H-akashiwo_Contig114.18.1 ID=prot_H-akashiwo_Contig114.18.1|Name=mRNA_H-akashiwo_Contig114.18.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=281bp
MELHDHLVSLGFQRSGHESCLYTRRDGGSELMVAVYVDDLVISGSSQAIV
SDFKQYLASKYDLTDQGGLTQILGIKVVRDKRGKCFYLSQTSFIKDALVK
FGLDYLPACKTPIDHTVDLTPTPGFEAKLSDANLYRSMVGTLAWVANWTR
PELAFAVHKLQRTQSNPEPKHFEAVQRAFRYIKGTQSESLRLGGDLVLRA
YSDADFCNDRIDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLAL
RSAVKDIMWLRSLLAELGCPQHDPTPVVEDN
back to top

mRNA from alignment at H-akashiwo_Contig114:1250302..1251144-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig114.18.1 ID=mRNA_H-akashiwo_Contig114.18.1|Name=mRNA_H-akashiwo_Contig114.18.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=843bp|location=Sequence derived from alignment at H-akashiwo_Contig114:1250302..1251144- (Heterosigma akashiwo CCMP452)
ATGGAACTGCATGATCATCTTGTATCTCTGGGCTTCCAACGCAGTGGGCA CGAATCTTGCTTGTATACTCGCCGTGATGGGGGCAGTGAGCTGATGGTGG CTGTGTACGTCGACGATTTAGTGATCAGTGGCAGTTCTCAGGCTATTGTC TCTGACTTTAAGCAATATCTCGCATCCAAATACGATCTCACTGATCAGGG GGGGCTTACCCAAATCCTTGGCATCAAAGTCGTTCGCGATAAAAGGGGCA AATGCTTCTATCTCTCCCAGACCTCCTTTATTAAGGACGCATTAGTCAAA TTCGGACTCGATTATCTCCCTGCGTGCAAAACGCCTATCGATCACACTGT GGATCTCACACCTACCCCTGGGTTTGAAGCGAAGCTCTCCGACGCAAACT TATACAGGTCTATGGTTGGTACACTTGCCTGGGTTGCGAACTGGACCAGA CCAGAGTTGGCTTTTGCAGTCCATAAGCTTCAACGTACTCAAAGTAACCC GGAGCCCAAACATTTCGAGGCGGTCCAGCGTGCATTTCGGTACATCAAAG GCACTCAGTCTGAGTCCCTGCGTCTGGGTGGTGATCTGGTACTACGGGCG TATTCTGATGCGGATTTTTGTAATGACCGTATTGATGGGAAGTCGGTTAC CGGCTATATTCTCTTTTTGGGTGACGCGCCTATAGTCTGGTCTTCAAAGC TTCAAGGTGCTGTCACTACTTCTACAGTGGAAGCTGAGTATCTAGCTCTT CGTTCAGCAGTCAAGGACATCATGTGGCTTCGCTCTCTTCTTGCTGAACT GGGGTGTCCTCAGCATGATCCCACTCCTGTTGTGGAAGACAAC
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig114:1250302..1251144-

>mRNA_H-akashiwo_Contig114.18.1 ID=mRNA_H-akashiwo_Contig114.18.1|Name=mRNA_H-akashiwo_Contig114.18.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=843bp|location=Sequence derived from alignment at H-akashiwo_Contig114:1250302..1251144- (Heterosigma akashiwo CCMP452)
ATGGAACTGCATGATCATCTTGTATCTCTGGGCTTCCAACGCAGTGGGCA
CGAATCTTGCTTGTATACTCGCCGTGATGGGGGCAGTGAGCTGATGGTGG
CTGTGTACGTCGACGATTTAGTGATCAGTGGCAGTTCTCAGGCTATTGTC
TCTGACTTTAAGCAATATCTCGCATCCAAATACGATCTCACTGATCAGGG
GGGGCTTACCCAAATCCTTGGCATCAAAGTCGTTCGCGATAAAAGGGGCA
AATGCTTCTATCTCTCCCAGACCTCCTTTATTAAGGACGCATTAGTCAAA
TTCGGACTCGATTATCTCCCTGCGTGCAAAACGCCTATCGATCACACTGT
GGATCTCACACCTACCCCTGGGTTTGAAGCGAAGCTCTCCGACGCAAACT
TATACAGGTCTATGGTTGGTACACTTGCCTGGGTTGCGAACTGGACCAGA
CCAGAGTTGGCTTTTGCAGTCCATAAGCTTCAACGTACTCAAAGTAACCC
GGAGCCCAAACATTTCGAGGCGGTCCAGCGTGCATTTCGGTACATCAAAG
GCACTCAGTCTGAGTCCCTGCGTCTGGGTGGTGATCTGGTACTACGGGCG
TATTCTGATGCGGATTTTTGTAATGACCGTATTGATGGGAAGTCGGTTAC
CGGCTATATTCTCTTTTTGGGTGACGCGCCTATAGTCTGGTCTTCAAAGC
TTCAAGGTGCTGTCACTACTTCTACAGTGGAAGCTGAGTATCTAGCTCTT
CGTTCAGCAGTCAAGGACATCATGTGGCTTCGCTCTCTTCTTGCTGAACT
GGGGTGTCCTCAGCATGATCCCACTCCTGTTGTGGAAGACAAC
back to top