mRNA_H-akashiwo_Contig1138.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1138.2.1
Unique NamemRNA_H-akashiwo_Contig1138.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1138.2.1 vs. uniprot
Match: A0A7S4DBC8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBC8_HETAK)

HSP 1 Score: 307 bits (787), Expect = 2.850e-100
Identity = 167/185 (90.27%), Postives = 171/185 (92.43%), Query Frame = 1
Query:  247 LKFSHKGGNWRCAG---RDLIIFTLLYADDVVLIAKEAAHLQRLLNSLDSFCGVSAMSVNISKTMVVPFFSKNPLDEFSFVFVNKQLKVVNEYKYLGCYFDRELSFKFHIEAALQRAAKASFASFFSDIENLPNLKTSLIVRLYHTLVLSVLLYNAEVWGLLILKGSLKKLEKFHLSCLKRILKV 792
            +K   +GG    AG    DLIIFTLLYADDVVLIAKEAAHLQRLLNSLD FCGVSAMSVNISKTM+VPFFSK+PLDEFSFVFVNKQLKVVNEYKYLGCYFDRELSFKFHIEAALQRAAKASF SFFSDIENLPNLKTSLIVRLYHTLVLSVLLYN EVWGLLILKGSLKKLEKFHLSCLKRILKV
Sbjct:    2 VKILAQGGG-ELAGVQVGDLIIFTLLYADDVVLIAKEAAHLQRLLNSLDVFCGVSAMSVNISKTMIVPFFSKSPLDEFSFVFVNKQLKVVNEYKYLGCYFDRELSFKFHIEAALQRAAKASF-SFFSDIENLPNLKTSLIVRLYHTLVLSVLLYNVEVWGLLILKGSLKKLEKFHLSCLKRILKV 184          
BLAST of mRNA_H-akashiwo_Contig1138.2.1 vs. uniprot
Match: A0A6V1P5X7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P5X7_HETAK)

HSP 1 Score: 288 bits (736), Expect = 2.950e-89
Identity = 155/265 (58.49%), Postives = 190/265 (71.70%), Query Frame = 1
Query:    7 CAFVDFRKAYDTVRHSILWNRLLSLGMGPKLVELLKSIYAKVKCSVRHGTNLSSFFDYLVGVRQGCVLSPLVFNLFIVSWLKFSHKGGNWRCAGR--DLIIFTLLYADDVVLIAKEAAHLQRLLNSLDSFCGVSAMSVNISKTMVVPFF-SKNPLDEFSFVFVNKQLKVVNEYKYLGCYFDRELSFKFHIEAALQRAAKASFASFFSDIENLPNLKTSLIVRLYHTLVLSVLLYNAEVWGLLILKGSLKKLEKFHLSCLKRILKV 792
            CAFVDFRKAYD+V+HS+LW RL SLG+GPKL ELL+SIY KV+C+VR    LS  F Y +GVRQGC+LSP++FNLFI   +    +  +        DL++F LLYADDVVL+A  AA L  LL SL  FC  S M+VN+ KT VV F  S++P +    +F NK L+VVNEYKYLGC+ D++L+F FHI AAL+RA +ASF S F  I    N+K SL +RLY TLVLSVLL+N EVWG L  K  L+KLEKFHLSCL+RIL V
Sbjct:  182 CAFVDFRKAYDSVKHSVLWKRLDSLGLGPKLTELLRSIYDKVRCTVRKDNQLSDLFPYDIGVRQGCILSPIIFNLFIDELVNVIQQNSDSLSGIEIGDLVVFILLYADDVVLVADNAADLSSLLRSLQEFCTASGMNVNVKKTKVVIFGKSRDPTNLPVVLFDNKPLEVVNEYKYLGCFVDKDLNFSFHIGAALKRAERASF-SLFRCIGGFRNMKVSLKLRLYKTLVLSVLLFNVEVWGHLARKVDLRKLEKFHLSCLRRILMV 445          
BLAST of mRNA_H-akashiwo_Contig1138.2.1 vs. uniprot
Match: A0A8H8XFJ2_9GAMM (Reverse transcriptase domain-containing protein n=3 Tax=Bathymodiolus brooksi thiotrophic gill symbiont TaxID=1052209 RepID=A0A8H8XFJ2_9GAMM)

HSP 1 Score: 157 bits (397), Expect = 5.140e-40
Identity = 95/278 (34.17%), Postives = 155/278 (55.76%), Query Frame = 1
Query:    1 VFCAFVDFRKAYDTVRHSILWNRLLSLGMGPKLVELLKSIYAKVKCSVRHGTNLSSFFDYLVGVRQGCVLSPLVFNLFI---VSWLKFSHKGGNWRCAGRDLI-----------IFTLLYADDVVLIAKEAAHLQRLLNSLDSFCGVSAMSVNISKTMVVPFFSKNPLDEFSFVFVNKQLKVVNEYKYLGCYFDRELSFKFHIEAALQRAAKASFASFFSDIENLPNLKTSLIVRLYHTLVLSVLLYNAEVWGLLILKGSLKKLEKFHLSCLKRILKV 792
            ++CAF+D+RKA+D+V   +LW +LL   +   ++ +++++Y   K  VR G+N S FF   +GVRQG  LSPL+F++F+     ++  ++ G N  C    L+           ++ LLYADD V+ A+ AA LQ  LN++  +C    + VN +KT VV F      +   F++ N++L VV+E++YLG  F R+ +F  +    +Q+A KA F  +        +L   ++++L+  +V  +LLY AEVWG    K  +   E  HL   K I+KV
Sbjct:  352 LYCAFIDYRKAFDSVDRILLWQKLLRTSIDGNMLVIIQNMYKNAKSCVRDGSNCSDFFPSNIGVRQGENLSPLLFSVFLNDLTEFMSHAYNGLNDVCNISHLLFDNDDIEVYFKLYLLLYADDTVIFAETAAELQSALNAMYLYCETWKLKVNTAKTNVVIFSKSRQSENIDFIYNNERLTVVDEFQYLGTIFSRKGNFGRNKARLVQQARKAMF--YVLRKARKLSLPIDILLQLFDVMVAPILLYGAEVWGYE--KNDIS--ETLHLEFCKYIMKV 623          
BLAST of mRNA_H-akashiwo_Contig1138.2.1 vs. uniprot
Match: A0A8J2MDS5_COTCN (Similar to jockey\pol: RNA-directed DNA polymerase from mobile element jockey (Drosophila funebris) n=1 Tax=Cotesia congregata TaxID=51543 RepID=A0A8J2MDS5_COTCN)

HSP 1 Score: 148 bits (374), Expect = 2.280e-39
Identity = 90/263 (34.22%), Postives = 145/263 (55.13%), Query Frame = 1
Query:    1 VFCAFVDFRKAYDTVRHSILWNRLLSLGMGPKLVELLKSIYAKVKCSVRHGTNLSSFFDYLVGVRQGCVLSPLVFNLFIVSWLK-FSHKGGNWRCAGRDLIIFTLLYADDVVLIAKEAAHLQRLLNSLDSFCGVSAMSVNISKTMVVPFFSKNPLDEFSFVFVNKQLKVVNEYKYLGCYFDRELSFKFHIEAALQRAAKASFASFFSDIENLPNLKTSLIVRLYHTLVLSVLLYNAEVWGLLILKGSLKKLEKFHLSCLKRIL 786
            +F  FVDF++A+D+V H +LWN+L   G+ PK+  +LK +Y +  C +R G  LS  F+   GV QG +LSPL+F L++   +K F  K         +  +  LLYADD+V+++    +L++ +N L+ +CG   +++N SKT +V F   +P ++      N  ++  NEY+YLG              AA ++A  A+ A+  S +  L       ++++Y + V S LLY A VWGL      L+KL++ HL   KR+L
Sbjct:    1 MFGLFVDFKRAFDSVPHVLLWNKLFKAGISPKIFRILKILYDQAICQIRSGGMLSEKFEVTEGVLQGEILSPLLFILYLYDIVKYFREKKAKSIQINSNYDMIMLLYADDLVILSDSILNLRKNVNILEEYCGTHKLNINFSKTKIVHFKRGDPNEKTKIYCGNNLIEWTNEYEYLGVPITGSALGLSAANAACRKARLATGAAL-SSLAGLKARSWDGMLKIYKSCVQSSLLYAAPVWGL----RYLEKLKQTHLMFFKRLL 258          
BLAST of mRNA_H-akashiwo_Contig1138.2.1 vs. uniprot
Match: UPI001E1D5B82 (uncharacterized protein LOC123545968 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D5B82)

HSP 1 Score: 153 bits (386), Expect = 1.460e-38
Identity = 86/240 (35.83%), Postives = 138/240 (57.50%), Query Frame = 1
Query:    4 FCAFVDFRKAYDTVRHSILWNRLLSLGMGPKLVELLKSIYAKVKCSVRHGTNLSSFFDYLVGVRQGCVLSPLVFNLFIVSWLKFSHKGGNWRCAGRDLIIFTLLYADDVVLIAKEAAHLQRLLNSLDSFCGVSAMSVNISKTMVVPFFSKNPLDEFSFVFV--NKQLKVVNEYKYLGCYFDRELSFKFHIEAALQRAAKASFASFFSDIENLPNLKTSLIVRLYHTLVLSVLLYNAEVWG 717
            F AF+DFRKAYD +  S LWNRL + G+  K++  +KS+Y+ V  S+R     + +FD   G+RQGC+LSPL+FNL+I     F          G +L+   LLYADD+VL+A+ AA LQ+LLN+L  +C ++ M++ +SK+ ++ F   +     + VF   N  L++V+ Y+YLG      L     ++A  Q A++A      +  + +  +   +  +LY T+V  V+ Y + +WG
Sbjct:  317 FAAFIDFRKAYDFINRSKLWNRLCNTGINGKMLSAIKSLYSTVSASIRVNCFSTEWFDVKSGLRQGCILSPLLFNLYINDLAVFLKSLDIGVKIGDELLCI-LLYADDIVLLAENAADLQKLLNALRDWCNLNDMNIYVSKSKIIHFRPPS-CSRTNQVFTCGNDTLEIVDRYRYLGLLMHEHLDLNVMVKAVAQSASRA-LGLVIAKCKVMGGVPYDVFTKLYDTVVWPVISYGSAIWG 553          
BLAST of mRNA_H-akashiwo_Contig1138.2.1 vs. uniprot
Match: A0A5J4XXJ8_9CHLO (Endonuclease-reverse transcriptase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XXJ8_9CHLO)

HSP 1 Score: 149 bits (377), Expect = 1.300e-37
Identity = 90/240 (37.50%), Postives = 138/240 (57.50%), Query Frame = 1
Query:    1 VFCAFVDFRKAYDTVRHSILWNRLLSLGMGPKLVELLKSIYAKVKCSVRHGTNLSSFFDYLVGVRQGCVLSPLVFNLFIVSWLKFSHKGGNWRCAG-RDLIIFTLLYADDVVLIAKEAAHLQRLLNSLDSFCGVSAMSVNISKTMVVPFFSKNPLDEFSFVFVNKQLKVVNEYKYLGCYFDRELSFKFHIEAALQRAAKASFASFFSDIENLPNLKTSLIVRLYHTLVLSVLLYNAEVWG 717
            ++C FVDFRKA+DTV  ++LW  L  LG+  ++++++KS+YA    +VR    +S+ F  L+GV+QGC LSP +F L++    K   +  +        +++  LLYADD++L+++ A+ LQ+ L++L SFC    ++VN+SKT VV F ++   D   FV     ++ V  YKYLG  F       F  +A +  A KA FA        L    T+L  +L+ TLVL +L Y  EVWG
Sbjct:   74 LYCCFVDFRKAFDTVPRAVLWQVLEELGVHGRILDIIKSLYAHDSAAVRSSQGISAIFRCLMGVKQGCPLSPTLFGLYVDGLEKHLLETADIDAPTLMGVMVPLLLYADDLILMSESASGLQKQLDALASFCEQRQLTVNLSKTKVVVFETRQS-DMCDFVLSGAVVERVESYKYLGFVFHATKKLTFGTDALVATAKKALFA-MRRRCALLGIRDTALQCKLFDTLVLPILSYGCEVWG 311          
BLAST of mRNA_H-akashiwo_Contig1138.2.1 vs. uniprot
Match: A0A354GGU0_9FLAO (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Tenacibaculum sp. TaxID=1906242 RepID=A0A354GGU0_9FLAO)

HSP 1 Score: 148 bits (374), Expect = 1.490e-37
Identity = 93/278 (33.45%), Postives = 153/278 (55.04%), Query Frame = 1
Query:    1 VFCAFVDFRKAYDTVRHSILWNRLLSLGMGPKLVELLKSIYAKVKCSVRHGTNLSSFFDYLVGVRQGCVLSPLVFNLFIVSWLKF---SHKGGNW------RCAGRDLI-----IFTLLYADDVVLIAKEAAHLQRLLNSLDSFCGVSAMSVNISKTMVVPFFSKNPLDEFSFVFVNKQLKVVNEYKYLGCYFDRELSFKFHIEAALQRAAKASFASFFSDIENLPNLKTSLIVRLYHTLVLSVLLYNAEVWGLLILKGSLKKLEKFHLSCLKRILKV 792
            ++CAF+D+ KA+D +  S LW +LL +G+  K++ ++ ++Y   K  VR   NLS FF   VGVRQG  LSPL+F +++  +  F    ++G  +      R  G D+      ++ LLYADD +++A+    LQ  LNS+  +C  +++ +N++KT V+ F      +   F +  +Q++VV++Y YLG   +   SF   IE  + +A KA F S  +    L  L   L + L+   V+ +LLY  EVWG      ++ ++E F+   LK +LKV
Sbjct:   59 LYCAFIDYSKAFDLINRSTLWIKLLGIGVKGKIINVIYNLYDSAKSCVRKCNNLSDFFHCNVGVRQGENLSPLLFAIYLNDFESFVAQEYEGLTFLSSEASRLLGDDVFEMYLRLYILLYADDTIVLAESPNQLQAALNSVQRYCEKNSLKLNLTKTKVIVFSRGKIRNIPKFWYGEEQVEVVDDYIYLGVKINYNGSFTKAIEKQIDQARKAMF-SLITKARRL-QLPVDLQIELFDKTVVPILLYGCEVWGC----SNISEIEVFYRKFLKIVLKV 330          
BLAST of mRNA_H-akashiwo_Contig1138.2.1 vs. uniprot
Match: A0A3C1S4H7_9FLAO (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Tenacibaculum sp. TaxID=1906242 RepID=A0A3C1S4H7_9FLAO)

HSP 1 Score: 148 bits (374), Expect = 6.770e-37
Identity = 93/278 (33.45%), Postives = 153/278 (55.04%), Query Frame = 1
Query:    1 VFCAFVDFRKAYDTVRHSILWNRLLSLGMGPKLVELLKSIYAKVKCSVRHGTNLSSFFDYLVGVRQGCVLSPLVFNLFIVSWLKF---SHKGGNW------RCAGRDLI-----IFTLLYADDVVLIAKEAAHLQRLLNSLDSFCGVSAMSVNISKTMVVPFFSKNPLDEFSFVFVNKQLKVVNEYKYLGCYFDRELSFKFHIEAALQRAAKASFASFFSDIENLPNLKTSLIVRLYHTLVLSVLLYNAEVWGLLILKGSLKKLEKFHLSCLKRILKV 792
            ++CAF+D+ KA+D +  S LW +LL +G+  K++ ++ ++Y   K  VR   NLS FF   VGVRQG  LSPL+F +++  +  F    ++G  +      R  G D+      ++ LLYADD +++A+    LQ  LNS+  +C  +++ +N++KT V+ F      +   F +  +Q++VV++Y YLG   +   SF   IE  + +A KA F S  +    L  L   L + L+   V+ +LLY  EVWG      ++ ++E F+   LK +LKV
Sbjct:  478 LYCAFIDYSKAFDLINRSTLWIKLLGIGVKGKIINVIYNLYDSAKSCVRKCNNLSDFFHCNVGVRQGENLSPLLFAIYLNDFESFVAQEYEGLTFLSSEASRLLGDDVFEMYLRLYILLYADDTIVLAESPNQLQAALNSVQRYCEKNSLKLNLTKTKVIVFSRGKIRNIPKFWYGEEQVEVVDDYIYLGVKINYNGSFTKAIEKQIDQARKAMF-SLITKARRL-QLPVDLQIELFDKTVVPILLYGCEVWGC----SNISEIEVFYRKFLKIVLKV 749          
BLAST of mRNA_H-akashiwo_Contig1138.2.1 vs. uniprot
Match: A0A354GHD9_9FLAO (Reverse transcriptase domain-containing protein n=2 Tax=Tenacibaculum sp. TaxID=1906242 RepID=A0A354GHD9_9FLAO)

HSP 1 Score: 148 bits (374), Expect = 7.240e-37
Identity = 91/278 (32.73%), Postives = 155/278 (55.76%), Query Frame = 1
Query:    1 VFCAFVDFRKAYDTVRHSILWNRLLSLGMGPKLVELLKSIYAKVKCSVRHGTNLSSFFDYLVGVRQGCVLSPLVFNLFIVSWLKF---SHKGGNW------RCAGRDLI-----IFTLLYADDVVLIAKEAAHLQRLLNSLDSFCGVSAMSVNISKTMVVPFFSKNPLDEFSFVFVNKQLKVVNEYKYLGCYFDRELSFKFHIEAALQRAAKASFASFFSDIENLPNLKTSLIVRLYHTLVLSVLLYNAEVWGLLILKGSLKKLEKFHLSCLKRILKV 792
            ++CAF+D+ KA+D +  S LW ++L+LG+   ++ ++ ++Y+K K  V++G +LS  F+  VGVRQG  LSPL+F +++  +  +    ++G  +      R  G + +     ++ LLYADD +++A+    LQ  LNS+  +C  + + +N++KT ++ F      +   F + N+Q++VV +Y YLG  F+   SF   +E    +A KA F S  +    L  L   + + L+   VL VLLY  EVWG      ++  +E F+   LK ILKV
Sbjct:  659 LYCAFIDYSKAFDLIDRSTLWMKVLNLGIRGNIINVIFNLYSKAKSCVKNGNDLSQLFNCNVGVRQGENLSPLLFAIYLNDFALYVSQEYEGLAFVSEETSRLLGDEAVDMFLRLYILLYADDTIVLAESPLQLQHALNSVKDYCDKNYLKLNLTKTKIIVFSRGKIRNIPKFFYGNEQVEVVKDYVYLGVKFNYNGSFTKAMEKQTDQARKAMF-SMLTKARRL-QLPVDIQIELFEKTVLPVLLYGCEVWGC----ANIDAIEVFYRKFLKIILKV 930          
BLAST of mRNA_H-akashiwo_Contig1138.2.1 vs. uniprot
Match: A0A023F6P3_TRIIF (Putative endonuclease-reverse transcriptase (Fragment) n=1 Tax=Triatoma infestans TaxID=30076 RepID=A0A023F6P3_TRIIF)

HSP 1 Score: 147 bits (370), Expect = 8.170e-37
Identity = 88/257 (34.24%), Postives = 152/257 (59.14%), Query Frame = 1
Query:    1 VFCAFVDFRKAYDTVRHSILWNRLLSLGMGPKLVELLKSIYAKVKCSVRHGTNLSSFFDYLVGVRQGCVLSPLVFNLFIVSWLKFSHKGGNWRCAGRDLIIFTLLYADDVVLIAKEAAHLQRLLNSLDSFCGVSAMSVNISKTMVVPFFSKNPLD-EFSFVFVNKQLKVVNEYKYLGCYFDRELSFKFHIEAALQRAAKASFASFFSDIENLPNLKTSLIVRLYHTLVLSVLLYNAEVWGLLILKGSLKKLEKFHLS 768
            V+C FVDF  A+D V  S L+ +LL+LG+  K V +L+++Y +  C+VR G  +S FF    GVRQGC+LSP++F++F+   L    +GG  R A  D ++  L+YADD+V++ +    LQR +N L+S+C    + VN+ K+ +V F     L  +  + + +++++VVN YKYLG      LSF  HI+  +  AAK +  S +  + +   +  S   ++++++  ++  Y A++WG    + +L+KL +F + 
Sbjct:  122 VYCFFVDFSAAFDRVNRSALFLKLLNLGVSSKFVTILRALYRETLCAVRGGNGISEFFSVASGVRQGCLLSPILFSVFVDD-LPGLLEGGV-RVA--DTVVKILMYADDIVILDENPLQLQRNINILESYCQHWGLEVNLKKSQIVVFRKGGRLSGKEKWRYGDQEIEVVNNYKYLGVTMTPRLSFDTHIKEKVS-AAKLALNSVWMGVISTKMVPLSHKYQIFNSVCRAIACYAAQIWGFQRYE-ALEKLLRFFIK 372          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1138.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DBC8_HETAK2.850e-10090.27Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6V1P5X7_HETAK2.950e-8958.49Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8H8XFJ2_9GAMM5.140e-4034.17Reverse transcriptase domain-containing protein n=... [more]
A0A8J2MDS5_COTCN2.280e-3934.22Similar to jockey\pol: RNA-directed DNA polymerase... [more]
UPI001E1D5B821.460e-3835.83uncharacterized protein LOC123545968 n=1 Tax=Merce... [more]
A0A5J4XXJ8_9CHLO1.300e-3737.50Endonuclease-reverse transcriptase n=1 Tax=Treboux... [more]
A0A354GGU0_9FLAO1.490e-3733.45Reverse transcriptase domain-containing protein (F... [more]
A0A3C1S4H7_9FLAO6.770e-3733.45Reverse transcriptase domain-containing protein (F... [more]
A0A354GHD9_9FLAO7.240e-3732.73Reverse transcriptase domain-containing protein n=... [more]
A0A023F6P3_TRIIF8.170e-3734.24Putative endonuclease-reverse transcriptase (Fragm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1138contigH-akashiwo_Contig1138:238019..238810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog10224.XP_006823893.1
PFAMsRVT_1
Model size792
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.51e-33
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,38VUX@33154|Opisthokonta,3C5TU@33208|Metazoa,3DF9K@33213|Bilateria
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size792
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387094.3132665-CDS-H-akashiwo_Contig1138:238018..2388101681387094.3132665-CDS-H-akashiwo_Contig1138:238018..238810Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1138 238019..238810 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1138.2.1prot_H-akashiwo_Contig1138.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1138 238019..238810 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1138.2.1

>prot_H-akashiwo_Contig1138.2.1 ID=prot_H-akashiwo_Contig1138.2.1|Name=mRNA_H-akashiwo_Contig1138.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=264bp
VFCAFVDFRKAYDTVRHSILWNRLLSLGMGPKLVELLKSIYAKVKCSVRH
GTNLSSFFDYLVGVRQGCVLSPLVFNLFIVSWLKFSHKGGNWRCAGRDLI
IFTLLYADDVVLIAKEAAHLQRLLNSLDSFCGVSAMSVNISKTMVVPFFS
KNPLDEFSFVFVNKQLKVVNEYKYLGCYFDRELSFKFHIEAALQRAAKAS
FASFFSDIENLPNLKTSLIVRLYHTLVLSVLLYNAEVWGLLILKGSLKKL
EKFHLSCLKRILKV
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mRNA from alignment at H-akashiwo_Contig1138:238019..238810+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1138.2.1 ID=mRNA_H-akashiwo_Contig1138.2.1|Name=mRNA_H-akashiwo_Contig1138.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=792bp|location=Sequence derived from alignment at H-akashiwo_Contig1138:238019..238810+ (Heterosigma akashiwo CCMP452)
GTGTTTTGTGCCTTTGTCGACTTTAGGAAAGCATACGACACAGTTCGCCA TTCCATTCTGTGGAACCGTTTGTTATCTTTGGGTATGGGCCCTAAATTGG TAGAATTACTCAAAAGCATCTATGCCAAGGTCAAGTGCTCAGTTCGGCAT GGTACCAACCTCTCTTCGTTCTTTGACTATCTAGTTGGAGTTCGGCAAGG CTGTGTCCTTTCCCCTCTTGTATTTAATTTATTCATTGTGAGTTGGTTAA AATTCTCGCACAAGGGGGGGAATTGGCGGTGTGCAGGTAGGGACCTTATT ATCTTTACTCTTTTGTATGCGGATGATGTGGTGCTTATCGCAAAGGAGGC CGCACATCTACAGAGACTACTGAATTCTTTGGATAGTTTTTGTGGAGTTT CAGCAATGAGTGTCAATATTTCGAAAACCATGGTTGTGCCTTTCTTTTCC AAAAATCCCCTGGATGAGTTCTCTTTTGTCTTTGTTAACAAGCAGCTTAA AGTTGTCAATGAGTATAAATATTTGGGTTGTTATTTTGACAGGGAACTGT CATTCAAATTTCACATTGAAGCAGCCCTGCAGAGAGCTGCAAAGGCTTCT TTTGCATCATTCTTTTCTGATATTGAGAATCTGCCGAACCTCAAGACTTC TCTGATAGTGAGGTTATATCATACTCTGGTCCTTTCTGTTCTTCTCTATA ATGCCGAGGTATGGGGGCTTTTGATTTTAAAAGGTAGTCTTAAAAAGCTT GAAAAGTTCCACCTTTCCTGTCTGAAGAGGATACTGAAAGTT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1138:238019..238810+

>mRNA_H-akashiwo_Contig1138.2.1 ID=mRNA_H-akashiwo_Contig1138.2.1|Name=mRNA_H-akashiwo_Contig1138.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=792bp|location=Sequence derived from alignment at H-akashiwo_Contig1138:238019..238810+ (Heterosigma akashiwo CCMP452)
GTGTTTTGTGCCTTTGTCGACTTTAGGAAAGCATACGACACAGTTCGCCA
TTCCATTCTGTGGAACCGTTTGTTATCTTTGGGTATGGGCCCTAAATTGG
TAGAATTACTCAAAAGCATCTATGCCAAGGTCAAGTGCTCAGTTCGGCAT
GGTACCAACCTCTCTTCGTTCTTTGACTATCTAGTTGGAGTTCGGCAAGG
CTGTGTCCTTTCCCCTCTTGTATTTAATTTATTCATTGTGAGTTGGTTAA
AATTCTCGCACAAGGGGGGGAATTGGCGGTGTGCAGGTAGGGACCTTATT
ATCTTTACTCTTTTGTATGCGGATGATGTGGTGCTTATCGCAAAGGAGGC
CGCACATCTACAGAGACTACTGAATTCTTTGGATAGTTTTTGTGGAGTTT
CAGCAATGAGTGTCAATATTTCGAAAACCATGGTTGTGCCTTTCTTTTCC
AAAAATCCCCTGGATGAGTTCTCTTTTGTCTTTGTTAACAAGCAGCTTAA
AGTTGTCAATGAGTATAAATATTTGGGTTGTTATTTTGACAGGGAACTGT
CATTCAAATTTCACATTGAAGCAGCCCTGCAGAGAGCTGCAAAGGCTTCT
TTTGCATCATTCTTTTCTGATATTGAGAATCTGCCGAACCTCAAGACTTC
TCTGATAGTGAGGTTATATCATACTCTGGTCCTTTCTGTTCTTCTCTATA
ATGCCGAGGTATGGGGGCTTTTGATTTTAAAAGGTAGTCTTAAAAAGCTT
GAAAAGTTCCACCTTTCCTGTCTGAAGAGGATACTGAAAGTT
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