mRNA_H-akashiwo_Contig1136.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1136.1.1
Unique NamemRNA_H-akashiwo_Contig1136.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1136.1.1 vs. uniprot
Match: A0A7S3Y8Z6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8Z6_HETAK)

HSP 1 Score: 159 bits (403), Expect = 6.180e-44
Identity = 81/100 (81.00%), Postives = 86/100 (86.00%), Query Frame = 1
Query:    4 VSKVLQLLDVRKSVGPDGVSPRVLKHCARQLARPLTRLFQKVGIPGVFPRSWKVARVTPVYKKKDASLPENYRPISVLPTLATTFERVLMKQLSSFLFRH 303
            VSKVL+ LDV KSVGPDGVSPRVLK CA QL  PLTRLFQK+G    FP SWKVARVTPVYKK+DASLP+NYRPISVLPTLATTFERVLM QL+SFL  H
Sbjct:  316 VSKVLRSLDVNKSVGPDGVSPRVLKDCAGQLVAPLTRLFQKIGKAAEFPTSWKVARVTPVYKKEDASLPKNYRPISVLPTLATTFERVLMPQLASFLIEH 415          
BLAST of mRNA_H-akashiwo_Contig1136.1.1 vs. uniprot
Match: A0A7S3Y8N4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8N4_HETAK)

HSP 1 Score: 156 bits (395), Expect = 2.400e-42
Identity = 79/100 (79.00%), Postives = 86/100 (86.00%), Query Frame = 1
Query:    4 VSKVLQLLDVRKSVGPDGVSPRVLKHCARQLARPLTRLFQKVGIPGVFPRSWKVARVTPVYKKKDASLPENYRPISVLPTLATTFERVLMKQLSSFLFRH 303
            VSKVL+ LDV KSVGPDGVSPRVLK CA QL  PLTRLFQK+G    FP SWKVARVTPV+KK+DA+LP+NYRPISVLPTLATTFERVLM QL+SFL  H
Sbjct:  316 VSKVLRSLDVNKSVGPDGVSPRVLKDCAGQLVAPLTRLFQKIGKAAEFPTSWKVARVTPVHKKEDANLPKNYRPISVLPTLATTFERVLMPQLASFLIEH 415          
BLAST of mRNA_H-akashiwo_Contig1136.1.1 vs. uniprot
Match: A0A8B6DA78_MYTGA (Reverse transcriptase domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6DA78_MYTGA)

HSP 1 Score: 92.8 bits (229), Expect = 2.020e-20
Identity = 47/101 (46.53%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 EVSKVLQLLDVRKSVGPDGVSPRVLKHCARQLARPLTRLFQKVGIPGVFPRSWKVARVTPVYKKKDASLPENYRPISVLPTLATTFERVLMKQLSSFLFRH 303
            EV   L LLDV K+ GPD +S R+LK+ AR+L+RPL +LF K     V+P +WK+  V PV+K  D  L  NYRPIS+L  +  + ER + K   +FL +H
Sbjct:  125 EVFDHLSLLDVTKATGPDEISGRLLKYAARELSRPLAQLFNKSIREAVYPETWKLESVIPVFKSCDRELVSNYRPISLLSIIGKSMERCVFKHFFNFLTKH 225          
BLAST of mRNA_H-akashiwo_Contig1136.1.1 vs. uniprot
Match: A0A091RXI1_9GRUI (Uncharacterized protein (Fragment) n=1 Tax=Mesitornis unicolor TaxID=54374 RepID=A0A091RXI1_9GRUI)

HSP 1 Score: 86.3 bits (212), Expect = 7.600e-20
Identity = 40/97 (41.24%), Postives = 62/97 (63.92%), Query Frame = 1
Query:    4 VSKVLQLLDVRKSVGPDGVSPRVLKHCARQLARPLTRLFQKVGIPGVFPRSWKVARVTPVYKKKDASLPENYRPISVLPTLATTFERVLMKQLSSFL 294
            VS +L  LD+ KS+GPDG+ PR+LK  A  LA+PL  ++Q+  + G  P  W++A VTP+YKK     P NYRP+S+      T E++++  ++ +L
Sbjct:    6 VSDLLHHLDIHKSIGPDGLHPRMLKELAEVLAKPLFIIYQQSWLTGEVPVDWRLANVTPIYKKGRKEDPGNYRPVSLTSVPGKTMEQIILSTITHYL 102          
BLAST of mRNA_H-akashiwo_Contig1136.1.1 vs. uniprot
Match: UPI0012D451D1 (uncharacterized protein LOC116346514 n=1 Tax=Contarinia nasturtii TaxID=265458 RepID=UPI0012D451D1)

HSP 1 Score: 87.0 bits (214), Expect = 1.610e-19
Identity = 40/97 (41.24%), Postives = 64/97 (65.98%), Query Frame = 1
Query:    1 EVSKVLQLLDVRKSVGPDGVSPRVLKHCARQLARPLTRLFQKVGIPGVFPRSWKVARVTPVYKKKDASLPENYRPISVLPTLATTFERVLMKQLSSF 291
            +V K LQ +++ K  GPDG+SP++LK+CA+ LA PLT LF+K    G  P   K +R+ P++K    +   NYRP+ ++PT+A  FE V+  ++++F
Sbjct:   60 DVLKALQSINMNKGAGPDGISPKLLKNCAKSLATPLTVLFRKSLHQGCVPDVLKKSRIVPIFKSGKKNSASNYRPVVIIPTIAKIFEMVVYGKINTF 156          
BLAST of mRNA_H-akashiwo_Contig1136.1.1 vs. uniprot
Match: A0A093J4Z1_FULGA (RNA-directed DNA polymerase from mobile element jockey (Fragment) n=1 Tax=Fulmarus glacialis TaxID=30455 RepID=A0A093J4Z1_FULGA)

HSP 1 Score: 84.0 bits (206), Expect = 6.690e-19
Identity = 38/95 (40.00%), Postives = 62/95 (65.26%), Query Frame = 1
Query:    4 VSKVLQLLDVRKSVGPDGVSPRVLKHCARQLARPLTRLFQKVGIPGVFPRSWKVARVTPVYKKKDASLPENYRPISVLPTLATTFERVLMKQLSS 288
            V+ +L   D  +S+GPDG+ PRVL+  A++LA+PL+ ++Q+  + G  P  W++A V+P+YKK     P NYRP+S+   L    ER +++ L+S
Sbjct:    9 VNNLLGHPDTHRSMGPDGIHPRVLRELAKELAKPLSIIYQQSWLTGDVPDDWRLANVSPIYKKGQKEDPGNYRPVSLTSVLGNIMERFVLRALTS 103          
BLAST of mRNA_H-akashiwo_Contig1136.1.1 vs. uniprot
Match: A0A2H9T5P0_9ZZZZ (Reverse transcriptase domain-containing protein n=1 Tax=invertebrate metagenome TaxID=1711999 RepID=A0A2H9T5P0_9ZZZZ)

HSP 1 Score: 89.7 bits (221), Expect = 9.180e-19
Identity = 42/101 (41.58%), Postives = 67/101 (66.34%), Query Frame = 1
Query:    1 EVSKVLQLLDVRKSVGPDGVSPRVLKHCARQLARPLTRLFQKVGIPGVFPRSWKVARVTPVYKKKDASLPENYRPISVLPTLATTFERVLMKQLSSFLFRH 303
            EV  ++++LDV+K+ GPDG+S R+L+  + +++ PL+ +F       +FP SWK+A V P++K  DAS+  NYRPIS+L  +   FERV+ K +  FL  +
Sbjct:  525 EVEDIIKILDVKKASGPDGISHRMLQLLSSEISIPLSFIFNYSLSSCIFPESWKIAHVMPIFKANDASIVSNYRPISLLSCIGKLFERVVYKHIYIFLIEN 625          
BLAST of mRNA_H-akashiwo_Contig1136.1.1 vs. uniprot
Match: A0A0P4VX79_SCYOL (Uncharacterized protein n=1 Tax=Scylla olivacea TaxID=85551 RepID=A0A0P4VX79_SCYOL)

HSP 1 Score: 89.7 bits (221), Expect = 9.250e-19
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 1
Query:    1 EVSKVLQLLDVRKSVGPDGVSPRVLKHCARQLARPLTRLFQKVGIPGVFPRSWKVARVTPVYKKKDASLPENYRPISVLPTLATTFERVL 270
            +V ++L  +DV K+ GPD VSPR+LKHCAR+L+ PLT +F        +P  WK ARV PV+KK   S P NYRPIS+L  +    E+++
Sbjct:  369 QVERLLGAVDVGKATGPDDVSPRLLKHCARELSAPLTTVFTSCLREKKWPSVWKEARVVPVHKKNSRSEPNNYRPISLLSVMGKLLEKIV 458          
BLAST of mRNA_H-akashiwo_Contig1136.1.1 vs. uniprot
Match: A0A091U0C0_PHORB (Uncharacterized protein (Fragment) n=1 Tax=Phoenicopterus ruber ruber TaxID=9218 RepID=A0A091U0C0_PHORB)

HSP 1 Score: 83.6 bits (205), Expect = 1.140e-18
Identity = 39/91 (42.86%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    4 VSKVLQLLDVRKSVGPDGVSPRVLKHCARQLARPLTRLFQKVGIPGVFPRSWKVARVTPVYKKKDASLPENYRPISVLPTLATTFERVLMK 276
            VS +L+ LD+ KS+GPDG+ PRVLK  A  L +PL+ ++Q+  + G  P  W++A VTP+YKK     P NYRP+S+        E+V+++
Sbjct:   16 VSDLLRHLDMHKSMGPDGIHPRVLKELAEVLIKPLSIIYQQSWLTGEVPVDWRLANVTPIYKKGQKEDPGNYRPVSLTSVPRKVMEQVILR 106          
BLAST of mRNA_H-akashiwo_Contig1136.1.1 vs. uniprot
Match: A0A8K1G244_9PASS (Uncharacterized protein n=1 Tax=Zosterops borbonicus TaxID=364589 RepID=A0A8K1G244_9PASS)

HSP 1 Score: 86.7 bits (213), Expect = 1.170e-18
Identity = 38/97 (39.18%), Postives = 62/97 (63.92%), Query Frame = 1
Query:    4 VSKVLQLLDVRKSVGPDGVSPRVLKHCARQLARPLTRLFQKVGIPGVFPRSWKVARVTPVYKKKDASLPENYRPISVLPTLATTFERVLMKQLSSFL 294
            V ++L  LD+ KS+GPDG+ PRV++  A +LA+PL+ ++Q+  + G  P  WK+A VTP++KK     P NYRP+S+ P      E+ ++  ++  L
Sbjct:   30 VRELLSCLDIHKSMGPDGIHPRVMRELADELAKPLSIIYQQSWLTGEVPDDWKLANVTPIHKKSGKDDPSNYRPVSLTPVPGKVMEQFILSVITQHL 126          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1136.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y8Z6_HETAK6.180e-4481.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y8N4_HETAK2.400e-4279.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8B6DA78_MYTGA2.020e-2046.53Reverse transcriptase domain-containing protein n=... [more]
A0A091RXI1_9GRUI7.600e-2041.24Uncharacterized protein (Fragment) n=1 Tax=Mesitor... [more]
UPI0012D451D11.610e-1941.24uncharacterized protein LOC116346514 n=1 Tax=Conta... [more]
A0A093J4Z1_FULGA6.690e-1940.00RNA-directed DNA polymerase from mobile element jo... [more]
A0A2H9T5P0_9ZZZZ9.180e-1941.58Reverse transcriptase domain-containing protein n=... [more]
A0A0P4VX79_SCYOL9.250e-1947.78Uncharacterized protein n=1 Tax=Scylla olivacea Ta... [more]
A0A091U0C0_PHORB1.140e-1842.86Uncharacterized protein (Fragment) n=1 Tax=Phoenic... [more]
A0A8K1G244_9PASS1.170e-1839.18Uncharacterized protein n=1 Tax=Zosterops borbonic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1136contigH-akashiwo_Contig1136:18047..18349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7070.TC004344-PA
PFAMsExo_endo_phos_2,RVT_1
Model size303
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.61e-17
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39N4Q@33154|Opisthokonta,3C0YC@33208|Metazoa,3DH14@33213|Bilateria
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size303
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387093.7339566-CDS-H-akashiwo_Contig1136:18046..183491681387093.7339566-CDS-H-akashiwo_Contig1136:18046..18349Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1136 18047..18349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1136.1.1prot_H-akashiwo_Contig1136.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1136 18047..18349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1136.1.1

>prot_H-akashiwo_Contig1136.1.1 ID=prot_H-akashiwo_Contig1136.1.1|Name=mRNA_H-akashiwo_Contig1136.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=101bp
EVSKVLQLLDVRKSVGPDGVSPRVLKHCARQLARPLTRLFQKVGIPGVFP
RSWKVARVTPVYKKKDASLPENYRPISVLPTLATTFERVLMKQLSSFLFR
H
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mRNA from alignment at H-akashiwo_Contig1136:18047..18349+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1136.1.1 ID=mRNA_H-akashiwo_Contig1136.1.1|Name=mRNA_H-akashiwo_Contig1136.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=303bp|location=Sequence derived from alignment at H-akashiwo_Contig1136:18047..18349+ (Heterosigma akashiwo CCMP452)
GAAGTGTCTAAGGTGCTGCAGTTGCTGGACGTGCGCAAATCGGTGGGCCC GGACGGAGTTAGCCCGCGGGTACTGAAGCACTGCGCCCGGCAGCTGgcGC GCCCTCTCACTCGGCTTTTTCAGAAAGTGGGCATACCTGGTGTGTTCCCC AGGAGCTGGAAGGTGGCAAGGGTCACCCCTGTCTACAAGAAGAAGGATGC CAGCCTCCCGGAGAACTACCGGCCGATCTCGGTGCTGCCCACTTTGGCCA CCACGTTTGAGCGCGTTCTCATGAAGCAGCTCAGCAGTTTTCTATTCAGG CAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1136:18047..18349+

>mRNA_H-akashiwo_Contig1136.1.1 ID=mRNA_H-akashiwo_Contig1136.1.1|Name=mRNA_H-akashiwo_Contig1136.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=303bp|location=Sequence derived from alignment at H-akashiwo_Contig1136:18047..18349+ (Heterosigma akashiwo CCMP452)
GAAGTGTCTAAGGTGCTGCAGTTGCTGGACGTGCGCAAATCGGTGGGCCC
GGACGGAGTTAGCCCGCGGGTACTGAAGCACTGCGCCCGGCAGCTGgcGC
GCCCTCTCACTCGGCTTTTTCAGAAAGTGGGCATACCTGGTGTGTTCCCC
AGGAGCTGGAAGGTGGCAAGGGTCACCCCTGTCTACAAGAAGAAGGATGC
CAGCCTCCCGGAGAACTACCGGCCGATCTCGGTGCTGCCCACTTTGGCCA
CCACGTTTGAGCGCGTTCTCATGAAGCAGCTCAGCAGTTTTCTATTCAGG
CAC
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