mRNA_H-akashiwo_Contig1135.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1135.5.1
Unique NamemRNA_H-akashiwo_Contig1135.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1135.5.1 vs. uniprot
Match: A0A7S1TWI2_9STRA (Methionine--tRNA ligase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWI2_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 9.220e-13
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 2 
Query:    2 KIASTAEGLGITPIQLCDKYVDCFKALNQRLKISNDNYVRTTDPAHEEVCR 154
            KIA  AE  G TPI +CD+Y   FKALNQRL +SND YVRTTD  H  +CR
Sbjct:  208 KIAKRAEDEGTTPIAICDRYSSAFKALNQRLLVSNDGYVRTTDEDHMAICR 258
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BLAST of mRNA_H-akashiwo_Contig1135.5.1 vs. uniprot
Match: A0A7S1XL31_9STRA (Methionine--tRNA ligase n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XL31_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 9.230e-13
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 2 
Query:    2 KIASTAEGLGITPIQLCDKYVDCFKALNQRLKISNDNYVRTTDPAHEEVCR 154
            KIA  AE  G TPI +CD+Y   FKALNQRL +SND YVRTTD  H  +CR
Sbjct:  208 KIAKRAEDEGTTPIAICDRYSSAFKALNQRLLVSNDGYVRTTDEDHMAICR 258
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BLAST of mRNA_H-akashiwo_Contig1135.5.1 vs. uniprot
Match: A0A7J6LE34_PEROL (Methionine--tRNA ligase n=4 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LE34_PEROL)

HSP 1 Score: 65.9 bits (159), Expect = 2.870e-11
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 2 
Query:    2 KIASTAEGLGITPIQLCDKYVDCFKALNQRLKISNDNYVRTTDPAHEEVCR 154
            KIA  AE  G TP ++CD Y   FKALNQRL+ISND Y+RTTD  H + C+
Sbjct:  213 KIAQKAESKGKTPKEICDIYASAFKALNQRLRISNDVYIRTTDEHHMKTCQ 263
[Close]
BLAST of mRNA_H-akashiwo_Contig1135.5.1 vs. uniprot
Match: A0A7J6M3W1_PERCH (Methionine--tRNA ligase n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6M3W1_PERCH)

HSP 1 Score: 65.5 bits (158), Expect = 3.920e-11
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 2 
Query:    2 KIASTAEGLGITPIQLCDKYVDCFKALNQRLKISNDNYVRTTDPAHEEVCR 154
            KIA  AE  G TP ++CD Y   F+ALNQRL+ISND Y+RTTD  H E C+
Sbjct:  178 KIAQKAESKGKTPQEICDIYASAFQALNQRLRISNDVYIRTTDHHHMETCQ 228
[Close]
BLAST of mRNA_H-akashiwo_Contig1135.5.1 vs. uniprot
Match: A0A7J6R2E4_PEROL (Methionyl-tRNA synthetase (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6R2E4_PEROL)

HSP 1 Score: 64.3 bits (155), Expect = 5.150e-11
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 2 
Query:    2 KIASTAEGLGITPIQLCDKYVDCFKALNQRLKISNDNYVRTTDPAHEEVCR 154
            KIA  AE  G TP ++CD Y   F+ALNQRL+ISND Y+RTTD  H + C+
Sbjct:   89 KIAQKAESKGKTPKEICDIYASAFQALNQRLRISNDVYIRTTDDHHMKTCQ 139
[Close]
BLAST of mRNA_H-akashiwo_Contig1135.5.1 vs. uniprot
Match: A0A7J6S074_PEROL (Methionine--tRNA ligase n=3 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6S074_PEROL)

HSP 1 Score: 64.7 bits (156), Expect = 7.310e-11
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 2 
Query:    2 KIASTAEGLGITPIQLCDKYVDCFKALNQRLKISNDNYVRTTDPAHEEVCR 154
            KIA  AE  G TP ++CD Y   F+ALNQRL+ISND Y+RTTD  H + C+
Sbjct:  213 KIAQKAESKGKTPKEICDIYASAFQALNQRLRISNDVYIRTTDEHHMQTCQ 263
[Close]
BLAST of mRNA_H-akashiwo_Contig1135.5.1 vs. uniprot
Match: A0A7J6QR08_PEROL (Methionyl-tRNA synthetase (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6QR08_PEROL)

HSP 1 Score: 64.3 bits (155), Expect = 8.370e-11
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 2 
Query:    2 KIASTAEGLGITPIQLCDKYVDCFKALNQRLKISNDNYVRTTDPAHEEVCR 154
            KIA  AE  G TP ++CD Y   F+ALNQRL+ISND Y+RTTD  H + C+
Sbjct:  213 KIAQKAESKGKTPKEICDIYASAFQALNQRLRISNDVYIRTTDERHIKTCQ 263
[Close]
BLAST of mRNA_H-akashiwo_Contig1135.5.1 vs. uniprot
Match: A0A7J6TFT1_PEROL (Methionyl-tRNA synthetase (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6TFT1_PEROL)

HSP 1 Score: 64.3 bits (155), Expect = 8.630e-11
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 2 
Query:    2 KIASTAEGLGITPIQLCDKYVDCFKALNQRLKISNDNYVRTTDPAHEEVCR 154
            KIA  AE  G TP ++CD Y   F+ALNQRL+ISND Y+RTTD  H + C+
Sbjct:  151 KIAQKAESKGKTPKEICDIYASAFQALNQRLRISNDVYIRTTDERHIKTCQ 201
[Close]
BLAST of mRNA_H-akashiwo_Contig1135.5.1 vs. uniprot
Match: A0A813H8Z3_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813H8Z3_POLGL)

HSP 1 Score: 64.3 bits (155), Expect = 9.630e-11
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 2 
Query:    2 KIASTAEGLGITPIQLCDKYVDCFKALNQRLKISNDNYVRTTDPAHEEVCR 154
            KIA +AE  G TP Q+CD+Y   F+ALNQRL +SND YVRTT+  H++V R
Sbjct:  201 KIAQSAEAEGQTPQQICDRYCLAFRALNQRLCVSNDFYVRTTEQRHKDVAR 251
[Close]
BLAST of mRNA_H-akashiwo_Contig1135.5.1 vs. uniprot
Match: C5L3J1_PERM5 (Methionine--tRNA ligase n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5L3J1_PERM5)

HSP 1 Score: 64.3 bits (155), Expect = 1.000e-10
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 2 
Query:    2 KIASTAEGLGITPIQLCDKYVDCFKALNQRLKISNDNYVRTTDPAHEEVCR 154
            KIA  AE  G TP ++CD Y   F+ALNQRL+ISND Y+RTTD  H + C+
Sbjct:  214 KIAQKAESKGKTPQEICDIYASAFQALNQRLRISNDIYIRTTDEHHMKTCQ 264
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1135.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1TWI2_9STRA9.220e-1362.75Methionine--tRNA ligase n=2 Tax=Phaeomonas parva T... [more]
A0A7S1XL31_9STRA9.230e-1362.75Methionine--tRNA ligase n=3 Tax=Phaeomonas parva T... [more]
A0A7J6LE34_PEROL2.870e-1158.82Methionine--tRNA ligase n=4 Tax=Perkinsus olseni T... [more]
A0A7J6M3W1_PERCH3.920e-1158.82Methionine--tRNA ligase n=1 Tax=Perkinsus chesapea... [more]
A0A7J6R2E4_PEROL5.150e-1156.86Methionyl-tRNA synthetase (Fragment) n=1 Tax=Perki... [more]
A0A7J6S074_PEROL7.310e-1156.86Methionine--tRNA ligase n=3 Tax=Perkinsus olseni T... [more]
A0A7J6QR08_PEROL8.370e-1156.86Methionyl-tRNA synthetase (Fragment) n=1 Tax=Perki... [more]
A0A7J6TFT1_PEROL8.630e-1156.86Methionyl-tRNA synthetase (Fragment) n=1 Tax=Perki... [more]
A0A813H8Z3_POLGL9.630e-1158.82Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
C5L3J1_PERM51.000e-1056.86Methionine--tRNA ligase n=1 Tax=Perkinsus marinus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1135contigH-akashiwo_Contig1135:143562..145653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size157
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387093.5151606-CDS-H-akashiwo_Contig1135:143561..1436411681387093.5151606-CDS-H-akashiwo_Contig1135:143561..143641Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1135 143562..143641 -
1681387093.527796-CDS-H-akashiwo_Contig1135:145577..1456531681387093.527796-CDS-H-akashiwo_Contig1135:145577..145653Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1135 145578..145653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1135.5.1prot_H-akashiwo_Contig1135.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1135 143562..145653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1135.5.1

>prot_H-akashiwo_Contig1135.5.1 ID=prot_H-akashiwo_Contig1135.5.1|Name=mRNA_H-akashiwo_Contig1135.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=52bp
EDREHGRGAGHHPHPAVRQVRRLLQGTEPAPEDLERQLRPHHRPRPRGGV
PP
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mRNA from alignment at H-akashiwo_Contig1135:143562..145653-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1135.5.1 ID=mRNA_H-akashiwo_Contig1135.5.1|Name=mRNA_H-akashiwo_Contig1135.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2092bp|location=Sequence derived from alignment at H-akashiwo_Contig1135:143562..145653- (Heterosigma akashiwo CCMP452)
GAAGATCGCGAGCACGGCCGAGGGGCTGGGCATCACCCCCATCCAGCTGT
GCGACAAGTACGTCGACTGCTTCAAGGTGGGCGGAGGGAGGAGCGCCCGA
CGGGGCAGTGAGTGGGGGGGGGGAGGGCAACGCACCGGAACCGAATGGAA
AAATAAAGAGATCTGAAAAGTGCTCTGTGTAGCTCGTTCATGTGCCTGAT
AGCCGACTTTTTTTTTCTTTTTTTTCTTCTTTTTTTCCCCCTACGTTTTA
GCATTTAAGTGACAAAAATTGCTTGTTGTAACTGTTGCTATCGCTACCCA
TTATCGTCCATGTGTGTGCAGTTGTCTTTTAAGAGGAAGGTATTCTTGTA
CATGCTGCTGTTGGAGAGCGGGGTGCCTTAGATCGCTCCATATGCCCGGA
ATTCTAGCTCTATAGCATCTTTTGAAAGTTGCCAGGAATTGGGCGGAAGA
TGAACTGGTCTCAGTTGGTGAAGGTGCTGTGGGCGTGTTGCAGTCAGCCG
AGCTGATCTCCGAGGTTTTGGAGCAGAGGGTCATCAAACTCTGGTGTCAA
GGTGCGAGCCATACCACGCCCTCGCCCGTCCCAGCAGCTTGCAGGTGAAT
CCAATGGCAGCTTGTTCTCTTCTACTTTCAAGTGAAGGGGTAGTAGAGAA
GGGTCAGGTTTGCGGAGTAGGGCCACAGCACTCTCTTGAATTCTATCAAG
CTTCTTCAAATGGCTTTCTGCAGCTCCCCCAGTAGGCCAGGCTGCCATAC
TCAATCTTTGAGCGCACAAAAGCTTTGTAAGCCCTCATGATGCTCTTGTC
ATCAAGCATGTGGCTCATCCTTCTGATTGCTCCCAAGCGCTTGCGGGCAT
CTGAGGCTATTGCTTGTATATATGCCGAGACCAGTTCCCCCTAGCATCTA
TAGTCAAACCAAGAATTTCCATCTCCTTCTTCTCCTTGACTGCTATTCTT
CCCATGCGGAGGGGGGGGTGAAGCTTCTCCGTGTTCTTCCGCTTCTTGGT
GTTGGAGACGACCGGCCCCTGGGATTCTTGGGCCCAAACTCCAGCAGCCA
CTCCTTGCCAAACAGGTACAACTGATGGAGGTCTGTGTCCAGCTCCCGCC
GTGCCAGCCGCGCCGCCCGCTCCTCCCTCTCCACCTCTTTGACAAGAGTG
AGATCATCAGCGTAGAAGTGACAGGCCTTCTGCAGAGCTGCCCGCACCCG
TTGGGGAGCGTTCCTCACAAAGAGGTCAAAAAGAAGAGGAGACCAGATGG
CGCCCTGCGGTACGCCGGACTTGATGCCCACATGCTCTGAGATCTCACCA
TTAGAGGCAACAAAGAGCGCCCTGTCGGAGAGATAGCTCTCAAAGAGCTT
GTAGGACTGATTTTTTTTATAAGAGGTAGCAAACCCCCGCATCATCATCA
TTGAGTGTAGGAGGTGGTAGTATGCTTTTTATCATTATTTTTACTATTTT
TGAATTTTTATGAATTTACATATACATATCTATATTTTTTTTTGAAAAAA
AAGGAACATGGAAGTAGTGGACAAAGTTCAAACTGAGTGTTGTGAACCAC
TCAAGTTCAACTGAATATTTAATGTTTGATGATTCATCATATTTTGAAAG
TCACCAGGAATAAAAAAACAGAACCCAATGAGGCAGACAAACTAATATAG
AAATTGACCTACTAATAGAAAGGTTGGAACATGAAATTCTTTTCAAAGCA
ACAAGAATATATCTCCATTTTTGATAAGACATGCATGCATAGACAACTAC
GCGTGTCGCAGCAGCAACAGTCACAATGCTCAAGTTTCGTCGCTTTGCAT
TTCCTCTAAACGAAGTCTGCGCATGGAGCAAAATGGTGGTCATGTACATA
AAAGTAAGCACAGCAACAGGTACAGCGTATGATGTATGTACTCAAGCTTT
GTAGATTTGCATGCTGAAACAGAGCATGCATTAATACACCACGCTGTACT
ATATATATATTTTCTTAACCCCCCCCTCCTCCCTTCCTCTCTCCCTCCTC
CGCCCCCCCCAGGCACTGAACCAGCGCCTGAAGATCTCGAACGACAACTA
CGTCCGCACCACCGACCCCGCCCACGAGGAGGTGTGCCGCCA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1135:143562..145653-

>mRNA_H-akashiwo_Contig1135.5.1 ID=mRNA_H-akashiwo_Contig1135.5.1|Name=mRNA_H-akashiwo_Contig1135.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=156bp|location=Sequence derived from alignment at H-akashiwo_Contig1135:143562..145653- (Heterosigma akashiwo CCMP452)
GAAGATCGCGAGCACGGCCGAGGGGCTGGGCATCACCCCCATCCAGCTGT
GCGACAAGTACGTCGACTGCTTCAAGGCACTGAACCAGCGCCTGAAGATC
TCGAACGACAACTACGTCCGCACCACCGACCCCGCCCACGAGGAGGTGTG
CCGCCA
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