mRNA_H-akashiwo_Contig1133.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1133.6.1
Unique NamemRNA_H-akashiwo_Contig1133.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1133.6.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 323 bits (829), Expect = 3.710e-107
Identity = 153/279 (54.84%), Postives = 201/279 (72.04%), Query Frame = 1
Query:    1 LKKKYRITDAGKLENFLGLKINRNLGKKTIHVSQSQFIKDALIKFGYDHCPPAKTPMDPTMDLSVNKEYKANEDDINRFRSMVGTLSWIATWSIPEISFAVHKLQRATNYPEAKHFAAAGRVFKYLKGSGNKSIKLGGGTILRAYCDADFCTDRIDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELVQQNEIEVKYINTSEQVGDLFTKAL 837
            L  KY +TD G+L   LG+K+ R+   K  H+SQ+ FIKDAL KFG D+ P  KTP+D T+DL+    +KA   D N +RSMVGTL+W+A W+ PE++F VHKLQR    PE KHF A  R F+YLKG+ ++S++LGG  +LRA+ D+DFC DR+DGKSVTGYI+FLGD+P+VW+S+LQ +VTT T EAEYLAL    KD+MWLR LL E+G  Q +PT V EDN+AC+ WA ++ V ++NRH HV+YH  +E V    I + YI T +QV D+ TKAL
Sbjct:   57 LASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKAL 335          
BLAST of mRNA_H-akashiwo_Contig1133.6.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 248 bits (633), Expect = 4.670e-72
Identity = 118/277 (42.60%), Postives = 185/277 (66.79%), Query Frame = 1
Query:   13 YRITDAGKLENFLGLKINRNLGKKTIHVSQSQFIKDALIKFGYDHCPPAKTPMDPTMDLSVNKEY--KANEDDINRFRSMVGTLSWIATWSIPEISFAVHKLQRATNYPEAKHFAAAGRVFKYLKGSGNKSIKLGGGTILRAYCDADFCTDRIDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELVQQNEIEVKYINTSEQVGDLFTKAL 837
            Y ++D G++E+ LG+K+ R+   +TI +SQ  FI++A  KF      P   P++  +D+++N +   + +  +  +FRS+VGT++W+A W+ PE+++++H L +    P A   AA+  + +YL  + +K + LGG   L AY DADFC++R  G+S +G+ +FLG SP++W+SR+Q  VT  TTEAEY++L     DVMWL+ LL  LG+KQ     + EDN ACI+WA + TV++  RH+HV+YHY +E+VQ  EIEVKY++T  Q+ D+FTK L
Sbjct:  706 YNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQ-GCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPL 981          
BLAST of mRNA_H-akashiwo_Contig1133.6.1 vs. uniprot
Match: A0A6A3JMT1_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3JMT1_9STRA)

HSP 1 Score: 199 bits (506), Expect = 6.320e-58
Identity = 107/281 (38.08%), Postives = 171/281 (60.85%), Query Frame = 1
Query:   13 YRITDAGKLENFLGLKINRNLGKKTIHVSQSQFIKDALIKFGYDHCPPAKTPMDPTMDLSVNKEYKANED-DINR---FRSMVGTLSWIATWSIPEISFAVHKLQRATNYPEAKHFAAAGRVFKYLKGSGNKSIKLGG--GTILRAYCDADFCTDRIDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELVQQNEIEVKYINTSEQVGDLFTKAL 837
            +++ D G +   LG++++ ++ +KT+ + Q ++I D + +F      P+ TP+D ++ ++   + +  E+  I R   FRS++G+LS++A  + P+I+ AV +L R    P  +H+ AA ++ +YLKG+ N  +  GG     L AY DAD+ +DR D +SV+G ++ L  +PVVW +  QK+V   TTEAEY+AL  C K+ MW R LL  LG KQ   TT++EDN   I+ A       + +H+ + YHY+RE +   +IE+KYINT EQV D  TK L
Sbjct:   95 FKLKDLGAVRYILGIEVHHDIAEKTLMLRQPRYIDDLVQRFNQTEAHPSVTPIDLSLPVTKEDQPETQEEMTIMRGKPFRSIIGSLSYLAGSTRPDIAVAVSRLSRYLENPGIRHWDAAIKIVRYLKGTRNYGVHFGGKMSPELIAYSDADWGSDRDDRRSVSGTVLMLFGAPVVWKTGYQKTVALSTTEAEYMALTMCVKECMWARLLLKNLGLKQEGATTIHEDNQGAIALARNTGYQSRTKHISIRYHYLRERIIAGDIELKYINTKEQVADFLTKGL 375          
BLAST of mRNA_H-akashiwo_Contig1133.6.1 vs. uniprot
Match: A0A6A3GI70_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GI70_9STRA)

HSP 1 Score: 196 bits (498), Expect = 1.290e-57
Identity = 101/282 (35.82%), Postives = 170/282 (60.28%), Query Frame = 1
Query:   10 KYRITDAGKLENFLGLKINRNLGKKTIHVSQSQFIKDALIKFGYDHCPPAKTPMDPTMDLSVNKEYKANEDDINR----FRSMVGTLSWIATWSIPEISFAVHKLQRATNYPEAKHFAAAGRVFKYLKGSGNKSIKLGG--GTILRAYCDADFCTDRIDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELVQQNEIEVKYINTSEQVGDLFTKAL 837
            K+RI D G+    LG++I+ ++ ++T+ +S   + +  + KFG ++  P  TP++P + L+   E +  ED        +RS+VG+L ++A  + P+IS AV KL R    P  KH+ A  +V +YL  + +  I   G  GT L AY DAD+  +R D +SV+G ++ L  +PVVW S  QK+V   +TEAEY+AL +C K+ +W+R LL ++G +Q+  T + EDN   ++ A  +    + +H+ + YH++RE V  +E+E++Y++T+ Q+ D  TK L
Sbjct:   21 KFRIKDMGRARFILGIEIDYDMERRTLGISHKAYTESIIKKFGQENAKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSDEVELQYVDTNNQLADFMTKCL 302          
BLAST of mRNA_H-akashiwo_Contig1133.6.1 vs. uniprot
Match: A0A6G0MQP7_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MQP7_9STRA)

HSP 1 Score: 194 bits (494), Expect = 6.040e-57
Identity = 102/282 (36.17%), Postives = 168/282 (59.57%), Query Frame = 1
Query:   10 KYRITDAGKLENFLGLKINRNLGKKTIHVSQSQFIKDALIKFGYDHCPPAKTPMDPTMDLSVNKEYKANEDDINR----FRSMVGTLSWIATWSIPEISFAVHKLQRATNYPEAKHFAAAGRVFKYLKGSGNKSIKLGG--GTILRAYCDADFCTDRIDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELVQQNEIEVKYINTSEQVGDLFTKAL 837
            K+RI D G+    LG++I+ ++ ++T+ +SQ  + +  + KFG ++  P  TP++P + L+   E +  ED        +RS+VG+L ++A  + P+IS AV KL      P  KH+ A  +V +YL  + +  I   G  GT L AY DAD+  +R D +SV+G ++ L  +PVVW S  QK+V   +TEAEY+AL +C K+ +W+R LL ++G +Q+  T + EDN   +S A  +    + +H+ +  H++RE V  NE+E++Y++T  Q+ D  TK L
Sbjct:   27 KFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQLTKADESQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSCFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTHLEAYSDADWVDNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMSLAKNVGYQARTKHIDIRCHFIREKVVSNEVELEYVDTKNQLADFMTKGL 308          
BLAST of mRNA_H-akashiwo_Contig1133.6.1 vs. uniprot
Match: A0A6A3HAR6_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=21 Tax=Phytophthora TaxID=4783 RepID=A0A6A3HAR6_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.120e-56
Identity = 101/282 (35.82%), Postives = 171/282 (60.64%), Query Frame = 1
Query:   10 KYRITDAGKLENFLGLKINRNLGKKTIHVSQSQFIKDALIKFGYDHCPPAKTPMDPTMDLSVNKEYKANEDDINR----FRSMVGTLSWIATWSIPEISFAVHKLQRATNYPEAKHFAAAGRVFKYLKGSGNKSIKLGG--GTILRAYCDADFCTDRIDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELVQQNEIEVKYINTSEQVGDLFTKAL 837
            K+RI D G+    L ++I+ ++ ++T+ +SQ  + +  + KFG ++  P  TP++P + L+ + E +  ED        +RS+VG+L ++A  + P+IS AV KL R    P  KH+ A  +V +YL  + +  I   G  GT L AY DAD+  +R D +SV+G ++ L  +PVVW S  QK+V   +TEAEY+AL +C K+ +W+R LL ++G +Q+  T + EDN   ++ A  +    + +H+ + YH++RE V  +E+E++Y++T+ Q+ D  TK L
Sbjct:  132 KFRIKDTGRARFILSIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQLTKSDEPQTEEDKAKMKSRPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSDADWVGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALISTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSDEVELEYVDTNNQLADFMTKGL 413          
BLAST of mRNA_H-akashiwo_Contig1133.6.1 vs. uniprot
Match: A0A6A4DK21_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4DK21_9STRA)

HSP 1 Score: 193 bits (491), Expect = 1.220e-56
Identity = 109/283 (38.52%), Postives = 167/283 (59.01%), Query Frame = 1
Query:   13 YRITDAGKLENFLGLKINRNLGKKTIHVSQSQFIKDALIKFGYDHCPPAKTPMDPTMDLSVNKEYKAN---EDDINR---FRSMVGTLSWIATWSIPEISFAVHKLQRATNYPEAKHFAAAGRVFKYLKGSGNKSIKLGGGTI--LRAYCDADFCTDRIDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELVQQNEIEVKYINTSEQVGDLFTKAL 837
            +++ D G +   LG++++ ++  KT+ + Q ++I D + +F      P+ TP+D  + L V KE +     E  I R   FRS++G+LS++A  + P+I+ AV +L R    P  +H+ AA ++ +YLKG+ N  +   G     L AY DAD+ +DR D +SV+G ++ L  +PVVW +  QK+V   TTE EY+AL  C K+ MW R LL  LG KQ   TT++EDN   I+ A       + +H+ + YHY+RE +   +IE+KYINT EQV D  TK L
Sbjct:   15 FKLKDLGAVRYILGIEVHHDIADKTLMLRQPRYIDDLVQRFNQTEAHPSVTPID--LSLPVTKEDQPETQAEMTIMRGKPFRSIIGSLSYLAGSTRPDIAVAVSRLSRYLENPGIRHWDAAIKIVRYLKGTRNYGVHFDGKMPPELIAYSDADWGSDRDDRRSVSGTVLMLFSAPVVWKTGFQKTVALSTTETEYMALTMCVKECMWARLLLKNLGLKQEGATTIHEDNQGAIALARNTGYQSRTKHISIRYHYLRERIIAGDIELKYINTKEQVADFLTKGL 295          
BLAST of mRNA_H-akashiwo_Contig1133.6.1 vs. uniprot
Match: A0A6A4F359_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4F359_9STRA)

HSP 1 Score: 193 bits (491), Expect = 1.160e-55
Identity = 102/282 (36.17%), Postives = 168/282 (59.57%), Query Frame = 1
Query:   10 KYRITDAGKLENFLGLKINRNLGKKTIHVSQSQFIKDALIKFGYDHCPPAKTPMDPTMDLSVNKEYKANEDDINR----FRSMVGTLSWIATWSIPEISFAVHKLQRATNYPEAKHFAAAGRVFKYLKGSGNKSIKLGG--GTILRAYCDADFCTDRIDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELVQQNEIEVKYINTSEQVGDLFTKAL 837
            K+RI D G+    LG++I+ ++ ++T+ +SQ  + +  + KFG ++  P  TP++P + L+   E +  ED        +RS+VG+L ++A  + P+IS AV KL R    P  KH+ A  +V +YL  + +  I   G  GT L AY DAD+  +R D +SV+G ++ +  +PVVW S  QK+V   +TEAEY+AL +C K+ +W+R LL ++G +Q+  T   EDN   ++ A  +      +H+ + YH++RE V  NE+E++Y++T  Q+ D  TK L
Sbjct:  101 KFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQLTKADEPQIEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSDADWAGNRDDRRSVSGMLLMMCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLNDIGAEQVGATVRYEDNQGAMALAKNVGYQAHTKHIDIRYHFIREKVVINEVELEYVDTKNQLADFMTKGL 382          
BLAST of mRNA_H-akashiwo_Contig1133.6.1 vs. uniprot
Match: A0A6A3VCN8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3VCN8_9STRA)

HSP 1 Score: 192 bits (488), Expect = 1.780e-55
Identity = 101/282 (35.82%), Postives = 168/282 (59.57%), Query Frame = 1
Query:   10 KYRITDAGKLENFLGLKINRNLGKKTIHVSQSQFIKDALIKFGYDHCPPAKTPMDPTMDLSVNKEYKANEDDINR----FRSMVGTLSWIATWSIPEISFAVHKLQRATNYPEAKHFAAAGRVFKYLKGSGNKSIKLGG--GTILRAYCDADFCTDRIDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELVQQNEIEVKYINTSEQVGDLFTKAL 837
            K+RI D G+    L ++I+ ++ ++T+ +SQ  + +  + KFG ++  P  TP++P + L+   E +  ED        +RS+VG+L ++A  + P+IS AV KL R    P  KH+ A  +V +YL  + +  I   G  GT L AY DAD+  +R D +SV+G ++ L  +PVVW S  QK+V   +TEAEY+AL +C K+ +W+R LL ++G +Q+  T + EDN   ++ A  +    + +H+ + YH++RE V  NE+E++ ++T  Q+ D  TK L
Sbjct:   77 KFRIKDMGRARFILSIEIDYDIERRTLGISQKAYTESIIKKFGQENTKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVINEVELESVDTKNQLADFMTKGL 358          
BLAST of mRNA_H-akashiwo_Contig1133.6.1 vs. uniprot
Match: A0A6G0MK94_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=A0A6G0MK94_9STRA)

HSP 1 Score: 192 bits (488), Expect = 6.740e-55
Identity = 100/282 (35.46%), Postives = 169/282 (59.93%), Query Frame = 1
Query:   10 KYRITDAGKLENFLGLKINRNLGKKTIHVSQSQFIKDALIKFGYDHCPPAKTPMDPTMDLSVNKEYKANEDDINR----FRSMVGTLSWIATWSIPEISFAVHKLQRATNYPEAKHFAAAGRVFKYLKGSGNKSIKLGG--GTILRAYCDADFCTDRIDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELVQQNEIEVKYINTSEQVGDLFTKAL 837
            K+RI D G+    LG++I+ ++ ++T+ +SQ  + +  + KFG ++  P  TP++P + L+   E +  ED        +RS+VG+L ++A  + P+IS AV KL R    P  KH+ A  +V +YL  + +  I   G  GT L AY DA++  +R D +SV+G ++ L  +PVVW S  QK+V   +TEAEY+AL +C K+ +W+R LL ++G +Q+    + EDN   ++ A  +    + +H+ + YH++RE V  +E+E++Y++T  Q+ D  TK L
Sbjct:  132 KFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPWLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSDANWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGAMVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSSEVELEYVDTKNQLADFMTKGL 413          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1133.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK3.710e-10754.84Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y1P1_HETAK4.670e-7242.60Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A6A3JMT1_9STRA6.320e-5838.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3GI70_9STRA1.290e-5735.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0MQP7_9STRA6.040e-5736.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3HAR6_9STRA1.120e-5635.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A4DK21_9STRA1.220e-5638.52Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A4F359_9STRA1.160e-5536.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3VCN8_9STRA1.780e-5535.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0MK94_9STRA6.740e-5535.46Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1133contigH-akashiwo_Contig1133:354083..354919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog67593.Physo140614
PFAMsRVT_2,Retrotran_gag_2,rve
Model size837
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.48e-49
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHHC@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size837
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387092.8628666-CDS-H-akashiwo_Contig1133:354082..3549191681387092.8628666-CDS-H-akashiwo_Contig1133:354082..354919Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1133 354083..354919 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1133.6.1prot_H-akashiwo_Contig1133.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1133 354083..354919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1133.6.1

>prot_H-akashiwo_Contig1133.6.1 ID=prot_H-akashiwo_Contig1133.6.1|Name=mRNA_H-akashiwo_Contig1133.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=279bp
LKKKYRITDAGKLENFLGLKINRNLGKKTIHVSQSQFIKDALIKFGYDHC
PPAKTPMDPTMDLSVNKEYKANEDDINRFRSMVGTLSWIATWSIPEISFA
VHKLQRATNYPEAKHFAAAGRVFKYLKGSGNKSIKLGGGTILRAYCDADF
CTDRIDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKD
VMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHY
VRELVQQNEIEVKYINTSEQVGDLFTKAL
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mRNA from alignment at H-akashiwo_Contig1133:354083..354919+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1133.6.1 ID=mRNA_H-akashiwo_Contig1133.6.1|Name=mRNA_H-akashiwo_Contig1133.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=837bp|location=Sequence derived from alignment at H-akashiwo_Contig1133:354083..354919+ (Heterosigma akashiwo CCMP452)
CTTAAAAAGAAGTACAGAATTACTGATGCGGGTAAACTGGAGAACTTTCT AGGCCTAAAAATAAACAGGAACTTAGGCAAAAAGACAATTCACGTGTCTC AGTCACAGTTCATCAAAGATGCGCTGATCAAGTTTGGGTATGATCATTGT CCTCCTGCGAAGACTCCAATGGATCCTACAATGGATCTTAGTGTCAACAA GGAATACAAAGCTAATGAGGATGATATCAACAGGTTTCGTTCCATGGTGG GGACTCTTAGCTGGATCGCAACCTGGTCTATACCTGAGATCTCTTTTGCA GTACACAAGCTACAGCGTGCGACTAACTATCCAGAAGCCAAACACTTTGC TGCTGCAGGCAGGGTCTTCAAATACCTGAAAGGTTCTGGTAATAAGTCCA TCAAACTTGGTGGGGGCACAATTCTTCGTGCTTATTGCGATGCGGACTTC TGCACCGATAGGATTGATGGAAAATCAGTCACCGGTTATATTGTCTTCCT AGGGGACTCTCCTGTAGTTTGGACATCTAGACTACAGAAATCAGTGACTA CGTGTACTACTGAGGCCGAATATCTAGCTCTTGGAGAATGTGCAAAAGAT GTGATGTGGCTGCGATACTTGTTGGCAGAACTAGGCTTCAAACAAATCAA ACCTACAACAGTGAATGAGGACAACACAGCTTGCATCTCTTGGGCTACTG AAATCACTGTTACCAGGAAGAATCGCCATCTTCATGTGAACTATCACTAT GTCAGGGAGCTAGTTCAACAAAATGAGATTGAAGTGAAGTACATCAATAC TTCAGAACAAGTTGGAGATCTGTTCACCAAGGCTCTC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1133:354083..354919+

>mRNA_H-akashiwo_Contig1133.6.1 ID=mRNA_H-akashiwo_Contig1133.6.1|Name=mRNA_H-akashiwo_Contig1133.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=837bp|location=Sequence derived from alignment at H-akashiwo_Contig1133:354083..354919+ (Heterosigma akashiwo CCMP452)
CTTAAAAAGAAGTACAGAATTACTGATGCGGGTAAACTGGAGAACTTTCT
AGGCCTAAAAATAAACAGGAACTTAGGCAAAAAGACAATTCACGTGTCTC
AGTCACAGTTCATCAAAGATGCGCTGATCAAGTTTGGGTATGATCATTGT
CCTCCTGCGAAGACTCCAATGGATCCTACAATGGATCTTAGTGTCAACAA
GGAATACAAAGCTAATGAGGATGATATCAACAGGTTTCGTTCCATGGTGG
GGACTCTTAGCTGGATCGCAACCTGGTCTATACCTGAGATCTCTTTTGCA
GTACACAAGCTACAGCGTGCGACTAACTATCCAGAAGCCAAACACTTTGC
TGCTGCAGGCAGGGTCTTCAAATACCTGAAAGGTTCTGGTAATAAGTCCA
TCAAACTTGGTGGGGGCACAATTCTTCGTGCTTATTGCGATGCGGACTTC
TGCACCGATAGGATTGATGGAAAATCAGTCACCGGTTATATTGTCTTCCT
AGGGGACTCTCCTGTAGTTTGGACATCTAGACTACAGAAATCAGTGACTA
CGTGTACTACTGAGGCCGAATATCTAGCTCTTGGAGAATGTGCAAAAGAT
GTGATGTGGCTGCGATACTTGTTGGCAGAACTAGGCTTCAAACAAATCAA
ACCTACAACAGTGAATGAGGACAACACAGCTTGCATCTCTTGGGCTACTG
AAATCACTGTTACCAGGAAGAATCGCCATCTTCATGTGAACTATCACTAT
GTCAGGGAGCTAGTTCAACAAAATGAGATTGAAGTGAAGTACATCAATAC
TTCAGAACAAGTTGGAGATCTGTTCACCAAGGCTCTC
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