mRNA_H-akashiwo_Contig1131.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1131.6.1
Unique NamemRNA_H-akashiwo_Contig1131.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1131.6.1 vs. uniprot
Match: A0A836CLB2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLB2_9STRA)

HSP 1 Score: 171 bits (432), Expect = 1.430e-51
Identity = 84/161 (52.17%), Postives = 111/161 (68.94%), Query Frame = 1
Query:    4 MSQRYKRVQNVEDDSPNPRSDREEAKKKRSDLIDTINAKIHALFWCAGAGAVMYYTDFIRVMLESDEVNRLYFNLGVVCFGINCCFMFYLTVYLPYIKKITLSWNIYCPRVIPTMTITGLACGLFLIMGMWPVWGFLTPLILGVVFMGMFFSLHFIPPLPC 486
            MSQRY RV   +  S    S+ EE K++R++L + I+ K+HA FW   AG V+YYTDF+RV+L+ D V R +FNL   CF +NC  M YLT++LP +++++  WNIYCPR IP  T  G+ CG+ L + +W VWGFLTPLIL VVFMG  F LHF+P  PC
Sbjct:    1 MSQRYSRVPTRDVKSTTETSE-EERKRRRTELAERISNKLHAAFWTIVAGVVVYYTDFVRVLLQDDRVKRPWFNLATACFAVNCVIMGYLTLWLPLVQRVSTPWNIYCPRAIPAATAVGVICGVSLNLALWSVWGFLTPLILLVVFMGCLFFLHFVP-WPC 159          
BLAST of mRNA_H-akashiwo_Contig1131.6.1 vs. uniprot
Match: D8LGK7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK7_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 8.190e-51
Identity = 84/161 (52.17%), Postives = 114/161 (70.81%), Query Frame = 1
Query:    4 MSQRYKRVQNVEDDSPNPRSDREEAKKKRSDLIDTINAKIHALFWCAGAGAVMYYTDFIRVMLESDEVNRLYFNLGVVCFGINCCFMFYLTVYLPYIKKITLSWNIYCPRVIPTMTITGLACGLFLIMGMWPVWGFLTPLILGVVFMGMFFSLHFIPPLPC 486
            MS RY RV     D  +P ++ E++K++RS L D I+ K+HA FW     AV+Y TDF+RV++E + V+RL+FN+G+VCF +N   + YLTV+LP+++ I +SWN+Y PR IPT T+ GL C L L M +W VWGFLTPLIL  VF+G  FSLHF+P  PC
Sbjct:   82 MSLRYSRV--TSGDGGSPATEAEQSKRRRSQLADRISNKLHAFFWVVVGVAVVYRTDFVRVLVEDERVDRLWFNIGLVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALNMSLWNVWGFLTPLILFAVFIGCLFSLHFVP-WPC 239          
BLAST of mRNA_H-akashiwo_Contig1131.6.1 vs. uniprot
Match: A0A024UNE8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UNE8_9STRA)

HSP 1 Score: 160 bits (406), Expect = 2.210e-47
Identity = 80/165 (48.48%), Postives = 105/165 (63.64%), Query Frame = 1
Query:   16 YKRVQNVED-DSP-----NPRSDREEAKK----KRSDLIDTINAKIHALFWCAGAGAVMYYTDFIRVMLESDEVNRLYFNLGVVCFGINCCFMFYLTVYLPYIKKITLSWNIYCPRVIPTMTITGLACGLFLIMGMWPVWGFLTPLILGVVFMGMFFSLHFIPPL 480
            Y+R+   +D DSP     N  ++ EE KK    K     + I+ KIHA  W  GAG ++YY D + V      V+R+YFNLG+VCFGIN C   YL ++LPY+KKI L WN+YCPR++PT TI G+ C L   MG+WPVWGF TP IL V+F+G   + HF+P L
Sbjct:   13 YQRLPLADDGDSPASVDANAETEIEELKKRAQGKPPSRAEVISTKIHAFLWIVGAGFLLYYLDVMHVAFRDSRVHRVYFNLGLVCFGINTCITLYLAIWLPYVKKIDLEWNVYCPRMVPTATIVGVVCALMFTMGLWPVWGFFTPGILFVLFLGALMTAHFLPAL 177          
BLAST of mRNA_H-akashiwo_Contig1131.6.1 vs. uniprot
Match: A0A8J2SGJ0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SGJ0_9STRA)

HSP 1 Score: 159 bits (401), Expect = 7.040e-47
Identity = 83/159 (52.20%), Postives = 103/159 (64.78%), Query Frame = 1
Query:   10 QRYKRVQNVEDDSPNPRSDREEAKKKRSDLIDTINAKIHALFWCAGAGAVMYYTDFIRVMLESDEVNRLYFNLGVVCFGINCCFMFYLTVYLPYIKKITLSWNIYCPRVIPTMTITGLACGLFLIMGMWPVWGFLTPLILGVVFMGMFFSLHFIPPLPC 486
            QRY RV   ED +    + R  AKK+RS+L + +  KI A  W A  G V Y TD   V+L   E NR + ++   CF  NC   FYLTV+LP++++I L WN+YCPRVIPTMT+ GL CG  LI G+WPVWG LTPLILG+V M    SLHFIP +PC
Sbjct:    6 QRYSRVP-TEDAA----TTRAAAKKRRSELAEQVATKIQAAAWVAAGGFVAYQTDLPVVLLAGTETNRFWCDVAAACFAANCVLCFYLTVWLPHVQRIDLEWNVYCPRVIPTMTVLGLTCGFSLIRGLWPVWGLLTPLILGLVAMACLMSLHFIP-IPC 158          
BLAST of mRNA_H-akashiwo_Contig1131.6.1 vs. uniprot
Match: W4FWN3_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FWN3_9STRA)

HSP 1 Score: 158 bits (399), Expect = 2.700e-46
Identity = 66/133 (49.62%), Postives = 93/133 (69.92%), Query Frame = 1
Query:   76 AKKKRSDLIDTINAKIHALFWCAGAGAVMYYTDFIRVMLESDEVNRLYFNLGVVCFGINCCFMFYLTVYLPYIKKITLSWNIYCPRVIPTMTITGLACGLFLIMGMWPVWGFLTPLILGVVFMGMFFSLHFIP 474
            A+ K     + ++ KIHAL W  GAG ++YY D +RV      V+R+YFN+G+VCFGIN C   YL+++LPY+KKI L W++YCPR++PT T+ G+ C L   +G+WPVWGF TP IL V+F+G   + HF+P
Sbjct:   45 AQGKPPSRAEVVSTKIHALMWIVGAGFLLYYLDVLRVAFRDARVHRVYFNIGLVCFGINACITLYLSIWLPYVKKIDLEWSVYCPRMVPTATVVGIVCALMFTVGLWPVWGFFTPGILFVLFLGTLMTAHFLP 177          
BLAST of mRNA_H-akashiwo_Contig1131.6.1 vs. uniprot
Match: A0A6G0XCK9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XCK9_9STRA)

HSP 1 Score: 157 bits (398), Expect = 3.090e-46
Identity = 72/149 (48.32%), Postives = 100/149 (67.11%), Query Frame = 1
Query:   28 QNVEDDSPNPRSDREEAKKKRSDLIDTINAKIHALFWCAGAGAVMYYTDFIRVMLESDEVNRLYFNLGVVCFGINCCFMFYLTVYLPYIKKITLSWNIYCPRVIPTMTITGLACGLFLIMGMWPVWGFLTPLILGVVFMGMFFSLHFIP 474
            +NVE++    +   +E    R++ + T   KIHA+ W  GA ++ Y+ D  RV      V+R+YFN+G+VCFGINCC   YL V+LPY+KKI L W++YCPR+IPT T+ GL C L L +G+WPVWGF TP IL V+F+G   + HF+P
Sbjct:   25 ENVENEIEELKKRMQEKSVSRAEWVST---KIHAVLWIVGAASLAYFLDVFRVAFRDARVHRIYFNIGLVCFGINCCITMYLAVWLPYVKKIDLEWSVYCPRMIPTATVVGLLCALMLTIGLWPVWGFFTPGILFVLFLGALMTAHFLP 170          
BLAST of mRNA_H-akashiwo_Contig1131.6.1 vs. uniprot
Match: A0A485KKF8_9STRA (Aste57867_8441 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKF8_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.030e-45
Identity = 79/169 (46.75%), Postives = 104/169 (61.54%), Query Frame = 1
Query:    1 TMSQRYKRVQNVEDDS-------PNPRSDREEAKK----KRSDLIDTINAKIHALFWCAGAGAVMYYTDFIRVMLESDEVNRLYFNLGVVCFGINCCFMFYLTVYLPYIKKITLSWNIYCPRVIPTMTITGLACGLFLIMGMWPVWGFLTPLILGVVFMGMFFSLHFIP 474
            T S  Y RV   ++D+       PN   + EE KK    K     + I+ K+HAL W  GAG+++Y  D  RV      V+R+YFN+G+VCFGINCC   YL V+LPYIKKI L W++YCPR++PT T  GL C L   +G+WPVWG  TP IL V+F+G   + HF+P
Sbjct:    7 TRSSSYHRVSQTDEDASSAVSVEPNVDVEIEELKKRVQGKPPTRAEWISTKLHALLWVLGAGSLVYTLDVFRVAFRDARVHRVYFNIGLVCFGINCCITLYLAVWLPYIKKIDLEWSVYCPRMVPTATAVGLLCALTFTIGLWPVWGLFTPGILFVLFLGSLMTAHFLP 175          
BLAST of mRNA_H-akashiwo_Contig1131.6.1 vs. uniprot
Match: A0A1W0A176_9STRA (Transmembrane protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A176_9STRA)

HSP 1 Score: 154 bits (388), Expect = 8.190e-45
Identity = 73/161 (45.34%), Postives = 101/161 (62.73%), Query Frame = 1
Query:    1 TMSQRYKRVQN---VEDDSPNPRSDREEAKKKRSDLIDTINAKIHALFWCAGAGAVMYYTDFIRVMLESDEVNRLYFNLGVVCFGINCCFMFYLTVYLPYIKKITLSWNIYCPRVIPTMTITGLACGLFLIMGMWPVWGFLTPLILGVVFMGMFFSLHFIP 474
            T S  Y+R+Q    +EDD       ++  + K     + ++ K+HA  W   A A+ Y  D + V      V+RLYFN+G+VCFG+NCC   YL V+LPY+KKI L W++YCPR+IPT TI G+ C L  I+G+WPVWGF TP IL V+F+G   + HF+P
Sbjct:    3 TRSSSYQRLQEEIVLEDDDQEIEQLKKRTQPKPPSKAEYVSTKLHAALWIGSAVALAYCLDVLNVAFHDPRVHRLYFNIGLVCFGMNCCITLYLAVWLPYVKKIDLEWSVYCPRMIPTATIIGILCALGFILGLWPVWGFFTPGILFVLFLGSLMTAHFLP 163          
BLAST of mRNA_H-akashiwo_Contig1131.6.1 vs. uniprot
Match: A0A1V9ZHJ8_9STRA (Transmembrane protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHJ8_9STRA)

HSP 1 Score: 147 bits (372), Expect = 2.690e-42
Identity = 64/124 (51.61%), Postives = 84/124 (67.74%), Query Frame = 1
Query:  109 INAKIHALFWCAGAGAVMYYTDFIRVMLESDEVNRLYFNLGVVCFGINCCFMFYLTVYLPYIKKITLSWNIYCPRVIPTMTITGLACGLFLIMGMWPVWGFLTPLILGVVFMGMFFSLHFIPPL 480
            ++ K+HA  W   AG V Y+ D   V      V+RL FN+G+VCFGINCC   YL ++LPY+KKI L W++YCPR+IPT T+ GL C L  I G+WP+WGF TP IL V+F+G   + HF+P L
Sbjct:   49 LSTKLHAALWVVCAGLVAYFLDVFNVAFGDPRVHRLSFNVGLVCFGINCCITAYLAIWLPYVKKIDLEWSVYCPRMIPTATVAGLGCALGFIFGLWPIWGFFTPGILFVLFLGTLMTAHFLPAL 172          
BLAST of mRNA_H-akashiwo_Contig1131.6.1 vs. uniprot
Match: A0A067CEE4_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067CEE4_SAPPC)

HSP 1 Score: 142 bits (359), Expect = 2.350e-40
Identity = 63/130 (48.46%), Postives = 87/130 (66.92%), Query Frame = 1
Query:   85 KRSDLIDTINAKIHALFWCAGAGAVMYYTDFIRVMLESDEVNRLYFNLGVVCFGINCCFMFYLTVYLPYIKKITLSWNIYCPRVIPTMTITGLACGLFLIMGMWPVWGFLTPLILGVVFMGMFFSLHFIP 474
            K     + ++ K+HAL W  GA  + YY D + + L    V+RLYFN+GVVC G+N C   YL ++LPY++K+ L W++YCPR+IPT TI GL   L LI+G+WPVWG  TP IL V+F+G   + HF+P
Sbjct:   39 KAPSKAEWLSTKLHALLWVGGACLLAYYLDVVHIALRDVRVHRLYFNIGVVCAGVNGCITAYLALWLPYVRKVDLEWSVYCPRMIPTATIVGLVGALGLILGLWPVWGLFTPGILFVLFLGTLMTAHFLP 168          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1131.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLB2_9STRA1.430e-5152.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LGK7_ECTSI8.190e-5152.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A024UNE8_9STRA2.210e-4748.48Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A8J2SGJ0_9STRA7.040e-4752.20Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
W4FWN3_9STRA2.700e-4649.62Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A6G0XCK9_9STRA3.090e-4648.32Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485KKF8_9STRA1.030e-4546.75Aste57867_8441 protein n=1 Tax=Aphanomyces stellat... [more]
A0A1W0A176_9STRA8.190e-4545.34Transmembrane protein n=1 Tax=Thraustotheca clavat... [more]
A0A1V9ZHJ8_9STRA2.690e-4251.61Transmembrane protein n=1 Tax=Achlya hypogyna TaxI... [more]
A0A067CEE4_SAPPC2.350e-4048.46Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1131contigH-akashiwo_Contig1131:85789..86277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LGK7
Model size489
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.29e-51
EggNOG OGs2BN0F@1|root,2S1N7@2759|Eukaryota
Cds size486
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387092.652294-CDS-H-akashiwo_Contig1131:85788..862741681387092.652294-CDS-H-akashiwo_Contig1131:85788..86274Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1131 85789..86274 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387092.6610844-UTR-H-akashiwo_Contig1131:86274..862771681387092.6610844-UTR-H-akashiwo_Contig1131:86274..86277Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1131 86275..86277 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1131.6.1prot_H-akashiwo_Contig1131.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1131 85789..86274 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1131.6.1

>prot_H-akashiwo_Contig1131.6.1 ID=prot_H-akashiwo_Contig1131.6.1|Name=mRNA_H-akashiwo_Contig1131.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=162bp
MSQRYKRVQNVEDDSPNPRSDREEAKKKRSDLIDTINAKIHALFWCAGAG
AVMYYTDFIRVMLESDEVNRLYFNLGVVCFGINCCFMFYLTVYLPYIKKI
TLSWNIYCPRVIPTMTITGLACGLFLIMGMWPVWGFLTPLILGVVFMGMF
FSLHFIPPLPC*
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mRNA from alignment at H-akashiwo_Contig1131:85789..86277-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1131.6.1 ID=mRNA_H-akashiwo_Contig1131.6.1|Name=mRNA_H-akashiwo_Contig1131.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=489bp|location=Sequence derived from alignment at H-akashiwo_Contig1131:85789..86277- (Heterosigma akashiwo CCMP452)
ACAATGAGCCAGAGGTACAAGAGAGTGCAGAATGTTGAGGATGATTCGCC AAATCCACGGTCAGATCGTGAGGAGGCAAAGAAAAAAAGATCAGATCTTA TCGATACAATCAATGCAAAGATCCATGCATTGTTCTGGTGCGCTGGCGCA GGAGCAGTAATGTATTACACAGATTTCATCCGTGTAATGCTCGAAAGTGA TGAAGTCAATCGTCTTTACTTCAATCTTGGCGTAGTTTGCTTTGGAATCA ATTGCTGTTTCATGTTCTATTTGACAGTTTACCTCCCATACATTAAAAAG ATTACTCTCTCTTGGAACATATATTGTCCTCGAGTTATCCCGACCATGAC CATTACTGGTCTAGCATGCGGCTTATTTTTGATCATGGGGATGTGGCCAG TGTGGGGATTTTTGACTCCTCTGATTCTAGGGGTCGTTTTTATGGGGATG TTTTTCTCGCTGCATTTCATCCCTCCTTTGCCTTGCTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1131:85789..86277-

>mRNA_H-akashiwo_Contig1131.6.1 ID=mRNA_H-akashiwo_Contig1131.6.1|Name=mRNA_H-akashiwo_Contig1131.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=486bp|location=Sequence derived from alignment at H-akashiwo_Contig1131:85789..86277- (Heterosigma akashiwo CCMP452)
ATGAGCCAGAGGTACAAGAGAGTGCAGAATGTTGAGGATGATTCGCCAAA
TCCACGGTCAGATCGTGAGGAGGCAAAGAAAAAAAGATCAGATCTTATCG
ATACAATCAATGCAAAGATCCATGCATTGTTCTGGTGCGCTGGCGCAGGA
GCAGTAATGTATTACACAGATTTCATCCGTGTAATGCTCGAAAGTGATGA
AGTCAATCGTCTTTACTTCAATCTTGGCGTAGTTTGCTTTGGAATCAATT
GCTGTTTCATGTTCTATTTGACAGTTTACCTCCCATACATTAAAAAGATT
ACTCTCTCTTGGAACATATATTGTCCTCGAGTTATCCCGACCATGACCAT
TACTGGTCTAGCATGCGGCTTATTTTTGATCATGGGGATGTGGCCAGTGT
GGGGATTTTTGACTCCTCTGATTCTAGGGGTCGTTTTTATGGGGATGTTT
TTCTCGCTGCATTTCATCCCTCCTTTGCCTTGCTAA
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