mRNA_H-akashiwo_Contig1129.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1129.5.1
Unique NamemRNA_H-akashiwo_Contig1129.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1129.5.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 498 bits (1283), Expect = 6.570e-176
Identity = 246/269 (91.45%), Postives = 255/269 (94.80%), Query Frame = 1
Query:   49 KYGIDFLQTYSPVVNSASLRLLLAISANKGYAVDSLDISTAFLNGAMTGDVYVRQPPGYVDPQHPNKIWKLNNKALYGLKQSPRVWYMELHDHLVSLGFQRSGHESCLYTRRDEGGELMVAVYVDDLVISGSSQAIVSDFKQSLSSKYDLTDQGGLTQILGIKVVRDKRGKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTHTPGFEAKLSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYL 855
            K+GIDF QTYSPVVN+ASLRLLLAISANKGYAVDSLDISTAFLNGAMT DVYVRQPP YVDPQHPNK+WKLN KALYGLKQSPRVWYMELHDHL SLGF+RSGHESCLY  RD G ELMVAVYVDDLVISGSSQAIVS+FKQSL+SKY+LTDQG LTQILGIKVVRDKR KCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLT TPGF+A+LSDANLYRSMVGTLAWVANWTRPELAF VHKLQRTQ NPEPKHFEAVQRAFRYL
Sbjct:    1 KFGIDFQQTYSPVVNAASLRLLLAISANKGYAVDSLDISTAFLNGAMTDDVYVRQPPSYVDPQHPNKVWKLN-KALYGLKQSPRVWYMELHDHLESLGFKRSGHESCLYIHRDGGNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268          
BLAST of mRNA_H-akashiwo_Contig1129.5.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 488 bits (1257), Expect = 1.340e-170
Identity = 246/270 (91.11%), Postives = 256/270 (94.81%), Query Frame = 1
Query:  310 MELHDHLVSLGFQRSGHESCLYTRRDEGGELMVAVYVDDLVISGSSQAIVSDFKQSLSSKYDLTDQGGLTQILGIKVVRDKRGKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTHTPGFEAKLSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKKGTQSESLRLLGGDLVLRAFSDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAEMG 1119
            MELHDHL SLGF+RSGHESCLY  RD G ELMVAVYVDDLVISGSSQA+VS+FKQSL+SKY LTDQG LTQILGIKVVRDKR KCFHLSQTSFIKDALAKFGLDYLPACKTP+DHTVDLT TPGF+A+LSDANLYRSMVGTLAWVANWTRPELAF VHKLQRTQ NPEPKHFEAVQRAFRYLK GTQSESLRL GGDLVLRAFSD+DFCNDR+DGKSVTGY+LFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLL EMG
Sbjct:    1 MELHDHLESLGFKRSGHESCLYIHRDGGNELMVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLK-GTQSESLRL-GGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMG 268          
BLAST of mRNA_H-akashiwo_Contig1129.5.1 vs. uniprot
Match: A0A7S3Y3B6_HETAK (Hypothetical protein (Fragment) n=6 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3B6_HETAK)

HSP 1 Score: 300 bits (767), Expect = 1.450e-95
Identity = 146/237 (61.60%), Postives = 187/237 (78.90%), Query Frame = 1
Query:    4 KHKARCLLVAQGYTQKYGIDFLQTYSPVVNSASLRLLLAISANKGYAVDSLDISTAFLNGAMTGDVYVRQPPGYVDPQHPNKIWKLNNKALYGLKQSPRVWYMELHDHLVSLGFQRSGHESCLYTRRDE--GGELMVAVYVDDLVISGSSQAIVSDFKQSLSSKYDLTDQGGLTQILGIKVVRDKRGKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTHTPGFEAKLSDAN 708
            K+KAR  LVAQG+TQ+ G+DF  TYSPV+ + SLRL+L+I+ANKG+AV++LDISTAFLN  + GDVYV+QPPG+VD  HP+K+WKL  KALYGL+QSPR+WY  LH+ L+   F RS +ESCLYTR++   G + MVAVYVDDLV+S +  ++VS  K S  S++ +TD G LT ILGIKV RD   KCF+LSQ SF++DA++KFGLDYLPAC+TP+ +  DLT TPGF+A L DAN
Sbjct:  176 KYKAR--LVAQGFTQREGVDFSTTYSPVIAAPSLRLMLSIAANKGHAVEALDISTAFLNSDIDGDVYVKQPPGFVDKDHPHKVWKLK-KALYGLRQSPRLWYNTLHEFLLQQNFVRSDYESCLYTRKNSVTGEDTMVAVYVDDLVLSSNIPSVVSSLKSSFVSRFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFVRDAISKFGLDYLPACRTPMTNATDLTPTPGFKASLPDAN 409          
BLAST of mRNA_H-akashiwo_Contig1129.5.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 310 bits (793), Expect = 1.770e-93
Identity = 159/375 (42.40%), Postives = 251/375 (66.93%), Query Frame = 1
Query:    4 KHKARCLLVAQGYTQKYGIDFLQTYSPVVNSASLRLLLAISANKGYAVDSLDISTAFLNGAMTGDVYVRQPPGYVDPQHPNKIWKLNNKALYGLKQSPRVWYMELHDHLVSLGFQRSGHESCLYTR-RDEGGELMVAVYVDDLVISGSSQAIVSDFKQSLSSKYDLTDQGGLTQILGIKVVRDKRGKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTHTPGFEAKLS--DANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKKGTQSESLRLLGGDLVLRAFSDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAEMG 1119
            K+KAR  L AQGY+Q  G+D+  T+SPVV+SASLR +L I+A++   +  +DI TAFL+G +  D+Y++QP GY  P   +K+ KL  K+LYGLKQ+P+ WY  L+  L+  G+ R+G++SC+Y++    GG+ +++VYVDD+V++ S ++ +S  K+++S  Y+++D G +  ILGIKV RD+  +   LSQ SFI++A  KF +        P++  +D+        +LS  +A  +RS+VGT+ W+A WT PE+A+++H L +  ++P      A     RYL   T+ + + L GG L L A++DADFC++R  G+S +G+ +FLG +PI+WSS++Q  VT +T EAEY++LR+AV D+MWL+ LL  +G
Sbjct:  546 KYKAR--LCAQGYSQIEGVDYTNTFSPVVSSASLRTVLTIAASEDMEIHCMDIKTAFLHGKLEEDIYMKQPEGYEVPGMEHKVLKLK-KSLYGLKQAPKCWYQNLNGFLLQQGYTRNGYDSCVYSKVSSTGGKTLISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLW-WTEDKGVTL-GGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLG 915          
BLAST of mRNA_H-akashiwo_Contig1129.5.1 vs. uniprot
Match: A0A4T9WAI5_9FIRM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Bacteria TaxID=2 RepID=A0A4T9WAI5_9FIRM)

HSP 1 Score: 278 bits (710), Expect = 7.780e-85
Identity = 152/375 (40.53%), Postives = 234/375 (62.40%), Query Frame = 1
Query:    4 KHKARCLLVAQGYTQKYGIDFLQTYSPVVNSASLRLLLAISANKGYAVDSLDISTAFLNGAMTGDVYVRQPPGYVDPQHPNKIWKLNNKALYGLKQSPRVWYMELHDHLVSLGFQRSGHESCLYTRRDEGGELMVAVYVDDLVISGSSQAIVSDFKQSLSSKYDLTDQGGLTQILGIKVVRDKRGKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTHTP---GFEAKLSDANL-YRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKKGTQSESLRL-LGGDLVLRAFSDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAE 1113
            + KAR  LVA+G++QKYGID+ +T++PV    S+R+LL+++A     V  +D+ TAFLNG +  D+Y+ QP GYVD   P+ + +L  ++LYGLKQSPR+W   + + ++ LGF++   + C+Y +RD    + VA+YVDDLV++ SS  ++ D KQ+LS ++++TD G L   LG+++ +D       + QT F KD L KF +D     KTP D  + LT      G +   + AN+ YR+ VG L ++   TRP+LA AV  L +  ++P P H++A++R FRY++ GT++  L      +  L+ +SDAD+  D  D KS +GY   L  AP+ W SK Q +V+ ST EAEY+AL  A+++  W+  LL E
Sbjct:  131 RFKAR--LVAKGFSQKYGIDYDETFAPVAKFTSIRVLLSLAAKYKLTVHQMDVKTAFLNGLLDEDIYMAQPDGYVDGDRPDYVCRLK-RSLYGLKQSPRMWNKTIDEFMLKLGFKKCESDHCIYLKRDNHDMMFVALYVDDLVLASSSDRMLKDTKQALSDRFEMTDMGQLKYFLGMEIEQDVATGKVSVRQTKFAKDILEKFKMDESNPVKTPQDPGLKLTKAMCEGGCKHDETMANVPYRNAVGCLMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIR-GTKTHGLVFQASSEDGLQGYSDADWAGDLADRKSASGYTFMLMSAPVSWGSKKQSSVSLSTSEAEYIALSLAIQEGKWIHRLLCE 501          
BLAST of mRNA_H-akashiwo_Contig1129.5.1 vs. uniprot
Match: A0A2N9H9J3_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9H9J3_FAGSY)

HSP 1 Score: 279 bits (714), Expect = 5.930e-83
Identity = 145/376 (38.56%), Postives = 230/376 (61.17%), Query Frame = 1
Query:    4 KHKARCLLVAQGYTQKYGIDFLQTYSPVVNSASLRLLLAISANKGYAVDSLDISTAFLNGAMTGDVYVRQPPGYVDPQHPNKIWKLNNKALYGLKQSPRVWYMELHDHLVSLGFQRSGHESCLYTRRDEGGELMVAVYVDDLVISGSSQAIVSDFKQSLSSKYDLTDQGGLTQILGIKVVRDKRGKCFHLSQTSFIKDALAKFGLDYLPACKTPIDH--TVDLTHTPGFEAKLSDANL--YRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKKGTQSESLRLLGGDLVLRAFSDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAEMG 1119
            ++KAR  LVA+GYTQ+ GID+  T+SPVV  AS+RL+L+I A +   +  +D+ TAFLNG +  ++Y+ QP G+    H  K+ +L  +++YGLKQS R WY+  HD + S GF+    + C+Y +R +   L++++YVDD++++G+    +   K+ LSS +++ D G    +LG+K+ RD+  K   LSQ ++IK  L +F +       TP++   T+ L   P  + + +  +   Y S +G+L +    TRP++ FAV  + R QSNP P H+ AV+R  RYL+ GT   +L   GGDL L  +SDAD+ +D+ + KS +GY   LG   + W SK Q  +  ST+E+EY+A  +AV++ +WLR  L  +G
Sbjct:  414 RYKAR--LVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQPAGFEAKGHERKVCRLK-RSIYGLKQSSRQWYLRFHDSITSFGFEMIEEDHCVYLKRSKRSILILSLYVDDILLAGNDMDSIVTTKKWLSSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILERFHMHNSKPIDTPMEKGCTLSLDQCPKNDEEKNQMSKVPYASAIGSLMYAMLCTRPDICFAVGMVSRYQSNPGPAHWRAVKRILRYLR-GTSDHALCYHGGDLRLTGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQEAVWLRRFLQRLG 785          
BLAST of mRNA_H-akashiwo_Contig1129.5.1 vs. uniprot
Match: A0A2N9FG19_FAGSY (Uncharacterized protein n=9 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FG19_FAGSY)

HSP 1 Score: 285 bits (728), Expect = 7.110e-83
Identity = 145/376 (38.56%), Postives = 231/376 (61.44%), Query Frame = 1
Query:    4 KHKARCLLVAQGYTQKYGIDFLQTYSPVVNSASLRLLLAISANKGYAVDSLDISTAFLNGAMTGDVYVRQPPGYVDPQHPNKIWKLNNKALYGLKQSPRVWYMELHDHLVSLGFQRSGHESCLYTRRDEGGELMVAVYVDDLVISGSSQAIVSDFKQSLSSKYDLTDQGGLTQILGIKVVRDKRGKCFHLSQTSFIKDALAKFGLDYLPACKTPIDH--TVDLTHTPGFEAKLSDANL--YRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKKGTQSESLRLLGGDLVLRAFSDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAEMG 1119
            ++KAR  LVA+GYTQ+ GID+  T+SPVV  AS+RL+L+I A +   +  +D+ TAFLNG +  ++Y+ QP G+    H  K+ +L  +++YGLKQS R WY+  HD + S GF+    + C+Y +R +   L++++YVDD++++G+    +   K+ LSS +++ D G    +LG+K+ RD+  K   LSQ ++IK  L +F +       TP++   T+ L   P  + + +  +   Y S +G+L +    TRP++ FAV  + R QSNP P H+ AV+R  RYL++GT   +L   GGDL L  +SDAD+ +D+ + KS +GY   LG   + W SK Q  +  ST+E+EY+A  +AV++ +WLR  L  +G
Sbjct:  887 RYKAR--LVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQPAGFEAKGHERKVCRLK-RSIYGLKQSSRQWYLRFHDSITSFGFEMIEEDHCVYLKRSKRSILILSLYVDDILLAGNDMDSIVTTKKWLSSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILERFHMHNSKPIDTPMEKGCTLSLDQCPKNDEEKNQMSKVPYASAIGSLMYAMLCTRPDICFAVGMVSRYQSNPGPAHWRAVKRILRYLRRGTSDHALCYHGGDLRLTGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQEAVWLRRFLQRLG 1259          
BLAST of mRNA_H-akashiwo_Contig1129.5.1 vs. uniprot
Match: A0A6D2HVH8_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HVH8_9BRAS)

HSP 1 Score: 267 bits (682), Expect = 7.210e-83
Identity = 142/364 (39.01%), Postives = 223/364 (61.26%), Query Frame = 1
Query:   28 VAQGYTQKYGIDFLQTYSPVVNSASLRLLLAISANKGYAVDSLDISTAFLNGAMTGDVYVRQPPGYVDPQHPNKIWKLNNKALYGLKQSPRVWYMELHDHLVSLGFQRSGHESCLYTRRDEGGELMVAVYVDDLVISGSSQAIVSDFKQSLSSKYDLTDQGGLTQILGIKVVRDKRGKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTHTPGFEAKLSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKKGTQSESLRLLGGD-LVLRAFSDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAEM 1116
            VA+G+ Q+YGID+ +T+SPVV S +LR+ L ++ +  + +  LD++ AFL G +T +VYV QPPG++D   P+   +L+ KALYGLKQ+PR WY EL ++L++LGFQ S  ++ ++        L   VYVDD++++GSS A+V  F  ++SS++ L D   L+  LGI+  R ++G   HL Q  +I D L +  +       TP+  T  L+    F + L D + YR+++G+L ++  +TRP++A+AV++L +    P  +H+ A +R  RYL  GT S    L   + L L A+SDAD+  D  D  S   Y+L++G  PI WSSK Q  V  S+ EAEY ++ +   ++ W+ SLL E+
Sbjct:    7 VARGFNQQYGIDYAETFSPVVKSITLRVALQLAVSCNWDIKQLDVNNAFLQGTLTDEVYVTQPPGFIDKDRPDHACRLH-KALYGLKQAPRAWYQELRNYLLALGFQNSLADTSVFVYSKGADLLYTLVYVDDIIVTGSSTALVDRFIAAISSRFSLKDPTDLSYFLGIEATRSQKG--LHLMQRKYIIDLLTRTNMLNSKPVATPMSPTPKLSLN--FGSPLDDPSQYRTVIGSLQYLG-YTRPDIAYAVNRLSQFMHRPTDEHWNAAKRVLRYLA-GTASHGFFLRANNPLTLHAYSDADWAGDVDDFVSTNAYILYIGATPIAWSSKKQKGVARSSTEAEYRSVANTAAELRWVYSLLTEL 363          
BLAST of mRNA_H-akashiwo_Contig1129.5.1 vs. uniprot
Match: A0A1J3CN06_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3CN06_NOCCA)

HSP 1 Score: 265 bits (677), Expect = 1.660e-82
Identity = 146/364 (40.11%), Postives = 225/364 (61.81%), Query Frame = 1
Query:    4 KHKARCLLVAQGYTQKYGIDFLQTYSPVVNSASLRLLLAISANKGYAVDSLDISTAFLNGAMTGDVYVRQPPGYVDPQHPNKIWKLNNKALYGLKQSPRVWYMELHDHLVSLGFQRSGHESCLYTRRDEGGELMVAVYVDDLVISGSSQAIVSDFKQSLSSKYDLTDQGGLTQILGIKVVRDKRGKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTHTPGFEAKLSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKKGTQSESLRLLGGDLV-LRAFSDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMW 1092
            ++KAR  LVAQGY+Q+ GID+ +T+SPVV  A++R++L+ + ++ + +  LD++  FL G +  +VY++QP G+ D  +P+ + KLN KA+YGLKQ+PR WY EL   L+  GFQ S  ++ L+    +G  L + VYVDD++I+G+SQ  +S F  SLS ++ L D G L+  LGI+V R K G   HL+Q  +I D L K  +       TP++    LT   G    L DA  YR++VG+L +++  TRP+++F+V+KL +    P   H+ AV+R  RYL  GT+++ +     +   L AF+DAD   ++ D  S + Y+++LG  P+ WSSK Q +V  S+ EAEY AL     +I W
Sbjct:   19 RYKAR--LVAQGYSQRPGIDYHETFSPVVKPATIRIVLSTATSRDWPLKQLDVNNVFLQGHLQDEVYMKQPKGFQDKDNPDAVCKLN-KAIYGLKQAPRAWYNELRTFLLQSGFQNSVADASLFIYNKDGVLLYMLVYVDDIIITGNSQPHISRFITSLSQRFSLKDLGDLSYFLGIEVKRTKVG--LHLTQARYIADLLRKANMTNAKTVSTPMESNSSLTLLSG--QALDDATEYRTIVGSLQYLS-LTRPDISFSVNKLSQFMHRPTNTHWSAVKRILRYLS-GTKTQGIFYSARNTPDLHAFTDADLAGNKDDYTSTSAYIVYLGGHPVAWSSKKQKSVARSSTEAEYRALADTTAEICW 373          
BLAST of mRNA_H-akashiwo_Contig1129.5.1 vs. uniprot
Match: A0A2N9F135_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F135_FAGSY)

HSP 1 Score: 279 bits (714), Expect = 1.980e-82
Identity = 145/376 (38.56%), Postives = 230/376 (61.17%), Query Frame = 1
Query:    4 KHKARCLLVAQGYTQKYGIDFLQTYSPVVNSASLRLLLAISANKGYAVDSLDISTAFLNGAMTGDVYVRQPPGYVDPQHPNKIWKLNNKALYGLKQSPRVWYMELHDHLVSLGFQRSGHESCLYTRRDEGGELMVAVYVDDLVISGSSQAIVSDFKQSLSSKYDLTDQGGLTQILGIKVVRDKRGKCFHLSQTSFIKDALAKFGLDYLPACKTPIDH--TVDLTHTPGFEAKLSDANL--YRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKKGTQSESLRLLGGDLVLRAFSDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLAEMG 1119
            ++KAR  LVA+GYTQ+ GID+  T+SPVV  AS+RL+L+I A +   +  +D+ TAFLNG +  ++Y+ QP G+    H  K+ +L  +++YGLKQS R WY+  HD + S GF+    + C+Y +R +   L++++YVDD++++G+    +   K+ LSS +++ D G    +LG+K+ RD+  K   LSQ ++IK  L +F +       TP++   T+ L   P  + + +  +   Y S +G+L +    TRP++ FAV  + R QSNP P H+ AV+R  RYL+ GT   +L   GGDL L  +SDAD+ +D+ + KS +GY   LG   + W SK Q  +  ST+E+EY+A  +AV++ +WLR  L  +G
Sbjct:  494 RYKAR--LVAKGYTQRKGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQPAGFEAKGHERKVCRLK-RSIYGLKQSSRQWYLRFHDSITSFGFEMIEEDHCVYLKRSKRSILILSLYVDDILLAGNDMDSIVTTKKWLSSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILERFHMHNSKPIDTPMEKGCTLSLDQCPKNDEEKNQMSKVPYASAIGSLMYAMLCTRPDICFAVGMVSRYQSNPGPAHWRAVKRILRYLR-GTSDHALCYHGGDLRLTGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQEAVWLRRFLQRLG 865          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1129.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y6S2_HETAK6.570e-17691.45Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S4DD78_HETAK1.340e-17091.11Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y3B6_HETAK1.450e-9561.60Hypothetical protein (Fragment) n=6 Tax=Heterosigm... [more]
A0A7S3Y1P1_HETAK1.770e-9342.40Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A4T9WAI5_9FIRM7.780e-8540.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9H9J3_FAGSY5.930e-8338.56Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9FG19_FAGSY7.110e-8338.56Uncharacterized protein n=9 Tax=Fagus sylvatica Ta... [more]
A0A6D2HVH8_9BRAS7.210e-8339.01Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1J3CN06_NOCCA1.660e-8240.11Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9F135_FAGSY1.980e-8238.56CCHC-type domain-containing protein n=1 Tax=Fagus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1129contigH-akashiwo_Contig1129:267717..268835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog67593.Physo132654
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size1119
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.17e-79
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHJF@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size1119
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387091.2499952-CDS-H-akashiwo_Contig1129:267716..2688351681387091.2499952-CDS-H-akashiwo_Contig1129:267716..268835Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1129 267717..268835 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1129.5.1prot_H-akashiwo_Contig1129.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1129 267717..268835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1129.5.1

>prot_H-akashiwo_Contig1129.5.1 ID=prot_H-akashiwo_Contig1129.5.1|Name=mRNA_H-akashiwo_Contig1129.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=373bp
VKHKARCLLVAQGYTQKYGIDFLQTYSPVVNSASLRLLLAISANKGYAVD
SLDISTAFLNGAMTGDVYVRQPPGYVDPQHPNKIWKLNNKALYGLKQSPR
VWYMELHDHLVSLGFQRSGHESCLYTRRDEGGELMVAVYVDDLVISGSSQ
AIVSDFKQSLSSKYDLTDQGGLTQILGIKVVRDKRGKCFHLSQTSFIKDA
LAKFGLDYLPACKTPIDHTVDLTHTPGFEAKLSDANLYRSMVGTLAWVAN
WTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKKGTQSESLRLLGGD
LVLRAFSDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEA
EYLALRSAVKDIMWLRSLLAEMG
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mRNA from alignment at H-akashiwo_Contig1129:267717..268835+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1129.5.1 ID=mRNA_H-akashiwo_Contig1129.5.1|Name=mRNA_H-akashiwo_Contig1129.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1119bp|location=Sequence derived from alignment at H-akashiwo_Contig1129:267717..268835+ (Heterosigma akashiwo CCMP452)
GTCAAGCACAAAGCTCGTTGTTTATTAGTGGCTCAAGGCTACACTCAAAA GTATGGCATTGATTTTTTGCAGACCTACTCGCCCGTTGTAAATTCGGCCA GCCTTAGACTGCTTCTTGCTATCTCGGCAAATAAAGGCTATGCTGTTGAC TCTCTTGATATTAGCACAGCCTTCCTGAATGGGGCTATGACCGGCGACGT TTACGTGCGCCAGCCGCCAGGCTATGTTGATCCTCAGCATCCCAATAAGA TTTGGAAGCTGAATAATAAAGCCCTGTACGGCCTCAAACAAAGCCCAAGG GTTTGGTATATGGAACTGCACGATCATCTTGTGTCTCTGGGTTTCCAGCG CAGTGGGCACGAGTCTTGCTTGTATACTCGTCGTGATGAGGGCGGTGAGC TGATGGTTGCCGTCTACGTTGACGATTTGGTGATCAGTGGCAGCTCTCAG GCTATTGTCTCTGATTTTAAGCAGTCTCTCTCGTCCAAGTACGATCTCAC TGATCAGGGGGGGCTCACCCAAATCCTTGGCATCAAGGTCGTTCGCGATA AACGGGGCAAATGCTTCCATCTTTCCCAGACCTCTTTTATCAAGGACGCA CTGGCTAAATTCGGACTCGATTACCTCCCTGCGTGCAAAACGCCTATCGA TCACACTGTGGATCTCACACATACTCCTGGGTTTGAAGCAAAACTCTCCG ATGCGAACTTATACAGGTCTATGGTTGGTACACTTGCCTGGGTGGCGAAC TGGACAAGACCGGAGCTGGCTTTTGCAGTCCATAAGCTTCAACGTACTCA AAGTAATCCAGAGCCCAAGCATTTCGAAGCGGTCCAGCGTGCGTTTCGAT ACCTCAAAAAAGGCACTCAGTCTGAATCCCTGCGGCTACTAGGTGGTGAT TTGGTGCTACGGGCTTTTTCTGATGCAGATTTTTGTAATGACCGTATTGA TGGGAAATCAGTTACCGGCTATGTTCTCTTTTTGGGTGATgCGCCTATAG TCTGGTCTTCAAAGCTTCAGGGTGCTGTCACTACCTCTACTGTGGAAGCT GAGTATCTAGCTCTTCGTTCAGCAGTCAAGGACATCATGTGGCTTCGCTC TCTCCTTGCTGAAATGGGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1129:267717..268835+

>mRNA_H-akashiwo_Contig1129.5.1 ID=mRNA_H-akashiwo_Contig1129.5.1|Name=mRNA_H-akashiwo_Contig1129.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1119bp|location=Sequence derived from alignment at H-akashiwo_Contig1129:267717..268835+ (Heterosigma akashiwo CCMP452)
GTCAAGCACAAAGCTCGTTGTTTATTAGTGGCTCAAGGCTACACTCAAAA
GTATGGCATTGATTTTTTGCAGACCTACTCGCCCGTTGTAAATTCGGCCA
GCCTTAGACTGCTTCTTGCTATCTCGGCAAATAAAGGCTATGCTGTTGAC
TCTCTTGATATTAGCACAGCCTTCCTGAATGGGGCTATGACCGGCGACGT
TTACGTGCGCCAGCCGCCAGGCTATGTTGATCCTCAGCATCCCAATAAGA
TTTGGAAGCTGAATAATAAAGCCCTGTACGGCCTCAAACAAAGCCCAAGG
GTTTGGTATATGGAACTGCACGATCATCTTGTGTCTCTGGGTTTCCAGCG
CAGTGGGCACGAGTCTTGCTTGTATACTCGTCGTGATGAGGGCGGTGAGC
TGATGGTTGCCGTCTACGTTGACGATTTGGTGATCAGTGGCAGCTCTCAG
GCTATTGTCTCTGATTTTAAGCAGTCTCTCTCGTCCAAGTACGATCTCAC
TGATCAGGGGGGGCTCACCCAAATCCTTGGCATCAAGGTCGTTCGCGATA
AACGGGGCAAATGCTTCCATCTTTCCCAGACCTCTTTTATCAAGGACGCA
CTGGCTAAATTCGGACTCGATTACCTCCCTGCGTGCAAAACGCCTATCGA
TCACACTGTGGATCTCACACATACTCCTGGGTTTGAAGCAAAACTCTCCG
ATGCGAACTTATACAGGTCTATGGTTGGTACACTTGCCTGGGTGGCGAAC
TGGACAAGACCGGAGCTGGCTTTTGCAGTCCATAAGCTTCAACGTACTCA
AAGTAATCCAGAGCCCAAGCATTTCGAAGCGGTCCAGCGTGCGTTTCGAT
ACCTCAAAAAAGGCACTCAGTCTGAATCCCTGCGGCTACTAGGTGGTGAT
TTGGTGCTACGGGCTTTTTCTGATGCAGATTTTTGTAATGACCGTATTGA
TGGGAAATCAGTTACCGGCTATGTTCTCTTTTTGGGTGATgCGCCTATAG
TCTGGTCTTCAAAGCTTCAGGGTGCTGTCACTACCTCTACTGTGGAAGCT
GAGTATCTAGCTCTTCGTTCAGCAGTCAAGGACATCATGTGGCTTCGCTC
TCTCCTTGCTGAAATGGGG
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