mRNA_H-akashiwo_Contig1122.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1122.2.1
Unique NamemRNA_H-akashiwo_Contig1122.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1122.2.1 vs. uniprot
Match: A0A7S3UV03_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UV03_HETAK)

HSP 1 Score: 189 bits (479), Expect = 2.400e-55
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 3 
Query:    3 KTVTTNNAGHMYGTDLGRIPVKCIVCDQPTPMKGNIRPVQAPRLIPNMSRPISGHVQNIERDPVVFRGGFRMPGRTNTNSGHLPAAGDA 269
            KTVTTNNAGHMYGTDLGRIPVKCIVCDQPTPMKGNIRPVQAPRLIPNMSRPISGHVQNIERDPVVFRGGFRMPGRTNTNSGHLPAAGDA
Sbjct:  437 KTVTTNNAGHMYGTDLGRIPVKCIVCDQPTPMKGNIRPVQAPRLIPNMSRPISGHVQNIERDPVVFRGGFRMPGRTNTNSGHLPAAGDA 525
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1122.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UV03_HETAK2.400e-55100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1122contigH-akashiwo_Contig1122:165704..170332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size272
Hectar predicted targeting categoryother localisation
Exons4
Cds size240
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387089.9080758-UTR-H-akashiwo_Contig1122:165703..1657351681387089.9080758-UTR-H-akashiwo_Contig1122:165703..165735Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1122 165704..165735 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387089.9180372-CDS-H-akashiwo_Contig1122:165735..1657491681387089.9180372-CDS-H-akashiwo_Contig1122:165735..165749Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1122 165736..165749 +
1681387089.9284158-CDS-H-akashiwo_Contig1122:166249..1663041681387089.9284158-CDS-H-akashiwo_Contig1122:166249..166304Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1122 166250..166304 +
1681387089.9436955-CDS-H-akashiwo_Contig1122:169785..1698681681387089.9436955-CDS-H-akashiwo_Contig1122:169785..169868Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1122 169786..169868 +
1681387089.954858-CDS-H-akashiwo_Contig1122:170244..1703321681387089.954858-CDS-H-akashiwo_Contig1122:170244..170332Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1122 170245..170332 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1122.2.1prot_H-akashiwo_Contig1122.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1122 165736..170332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1122.2.1

>prot_H-akashiwo_Contig1122.2.1 ID=prot_H-akashiwo_Contig1122.2.1|Name=mRNA_H-akashiwo_Contig1122.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=80bp
MYGTDLGRIPVKCIVCDQPTPMKGNIRPVQAPRLIPNMSRPISGHVQNIE
RDPVVFRGGFRMPGRTNTNSGHLPAAGDA*
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mRNA from alignment at H-akashiwo_Contig1122:165704..170332+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1122.2.1 ID=mRNA_H-akashiwo_Contig1122.2.1|Name=mRNA_H-akashiwo_Contig1122.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=4629bp|location=Sequence derived from alignment at H-akashiwo_Contig1122:165704..170332+ (Heterosigma akashiwo CCMP452)
TAAAAACAGTCACAACAAACAATGCGGGTCATATGTACGGAACTGAGTGA
GTATTTAATGTAACAAGCATTCATAAATTGGTAAATGTACATCCGCGTGA
GCATATAAACCGTAAAGCATCATATGTTATCATTCATATGAAAGTGATCA
CTGATGGTATTATTAGCTATATAGCAGTTAGCACAAATCGTCTGTAGATC
ATCAATTACTGCTCCAGTCAGAAGTAATAGAGTCATTAATATTGCATGCA
TATGTATGTATACCAAGTATATAGTTTTTCAGTATATTATTTGTTTTCTT
TGGATTTGTGCCCCTTTTTCGTGCATGTGGCTGCTGCTGACTGAATGATA
CACTTTACCAATGTATCCATTATTTTATTACTTGTGATTATCACCAGATA
TCATAAGTATTCCTCATGTGCAGTTCAGCAGTGTAGTTGCTCTCATCAAA
TAGTGTTTCTATGCAACGATGATTGGAATCTGTGTATTTCCCATTCTGCC
AATACATGAAATATATATGTGCCCATACCACCTTTTTTGTCTGCAGCCTC
GGCAGAATTCCTGTCAAGTGTATAGTGTGCGATCAGCCCACACCAATGAA
GGTAATCCCCTGGACCTCCCCTCCCATGCAAATGTCAAAATTTCCTCCAA
ATATAAGACCCCCCCTTTCCACCAAATATAAGATCCCCCCTTTTCCACCA
AATGTAAGACCTCCCTCAGACAAATTTTTACCCCCCCTACAAAACTGACC
TGGAAATCTCCCTGGATGCGGGCCCATCGCACGGTATGTTCGATAGGGTC
CCAGGCGGACATCCGGGCCCGCCCGGTGTGTCCGGGGTCCGCATGGTATA
TCCGACAGGGTCGCCGGGCGGACATCCGGGCCCGCCCGGTGTGTCCGGGG
TCCGCACGGTATGTCCGACAGGGTCCGCCCGGGCGGACATCCGGGCCCGC
CGGTGTGTCCGGGGTCCGCACGGTATGTCCGACAGGGTCCGCCTGGCGGA
CATCCGGGCCCGCAGTCAGGGGTGTCCGGGACAATTTTTCTAGGGGGGTA
AATGTCAAAATTTCCACTGAATATAAGAGCGGGGGGTAATATAAGACCCC
CCCCAGACCTCCCTCTCCCTATTATAAGACCGGTCTTATATTAGGTGGAA
CACGATACTATAATATATATGTATCGCTAGCGTCTCTAAACCTGCCTGTG
AAAGGGTGTATGATGATGGTGATGTTAATTTTAGTTTTCAGTCTAGGCTT
TCAAACCGCTTCTGGGGCAGAACCCCTATAGCTTCTAATACTAGCAGGCT
CTTCCACCTCAATCTGCCATTTCTCAATACCACTACCCAATAATCGTAAA
AATACAAGAATAATTAATTCAAGTACATTTATCTCCAACCATGCTTCTGA
ACCCCTCAGAAATCAAGATGCCCGGCTCGCTTCACAAACTATGCCAGCCT
CTTAATTTCTCTATAAACATTTTTTTTTCTACTTACAATGCGCCCCTTCA
CTTCCTGAGCCACACAACCACCGTCTATTTGTAAGTTGCCTTGACATCTG
ATGCACTTCTTCGGATCAAGTCTGACTACTGACTAACTTTGGAAGTTCCA
GCTGTCCTTAACCCTACATGCTCTATTGCCCTTTGGCCTCATCGCCCTCT
TTCAGTTGTCTCTACCGTAGACGCTGCTTCCGACAACTCACATCCATCGA
CGAGTGCATCTTCTCCTTCCCGCAGGTCGAGGGTGTTCATCTGGACAGAT
GCAGTCACCCTCTCGAGTCGGAGCACGAGTGCTCCTTCTTAGCCCGTTTT
TCAAGCTTATGGAATGTAACTTCCACAAACCGGCCTCATGAACAGTAGGT
GATATTCATGTTTTAGCGTTCGCCACTTGTGATGGATCATCGAACGCCTA
CAGCTATTGCGAGGACATTTCGCTAAGCCCCCAGTGATATCCGTCTGTTC
CCAGAACCAGACAGGATTTTGCATTTTCCGCATTTCCGCAAAACAGAAGG
GTGGGAATTGAACCCACTACCTCTTGAGCCCAACCTTCGAGCGCTGACGA
CTCTGCTGCGAAGACTACCTCTTGAGCCCAACCTTCGAGCGCTGACGACT
CTGCTGCGAAGACTGTTATCGGTCTAGCGGAATTAGCGATGCTCACACGA
CGACATTTCCCCGTACTCCCCGCTGACTCACGTGCTTTCAATCCCAAACG
CGGGCGTGTTACGTTCGGAACGCTGTTGTCCATATGCACAGTGCTGATAA
CGTGTTGCATTTTCCGCAGAACAGAAGGGTGGGAATTGAACCCACTACCT
CTTGAGCCCAACCTTCGAGCGCTGACGACTGTGCTGCGAAGACTGTTATC
GGTCTAGCGGAATTAACGATGCTCACACGACGGCACAGGATACCTCCGAG
TAACACGCCAATGATAGAATCAGTTCCGCCAAACCGGAGGAGTCCGAAAG
TGCCAGGCAATGCCGATGTCCGAAGACGGAGGCTGATGCCGCGCACCCAG
ATTCGAACCGGACCTCACGGATTAAAACTCACATTCTACCGCTGTTCCAA
AGCGTGCTAATGTTCCCCAGACTGGACCCTGGGTCCCCCGCACAATAAGA
TCATTCATTTCCAGCCACTGCATATATATACCACCTCAGATAGCGCAGGA
GGTAGTGATAAGCCCACAGTAGCCACACGTGCCATTTCCCTGGTTTTTCA
CCCTTGCAAGGTACCCCACTAGATTACAGTGACCAGATAACAGTTGCAGG
ACTCTCCGACCCCTGCTTTCCCTCTCCACACTTTGTTCTGTAGGCAACCA
AGAGCAGGCATGAACTGAAGACACACCTTAGCGCCACCACCATCCATCCC
GGCCCCATCCTCCAGGGCCTCCCACTCCTGCGACCACAGCTGCCACGGCC
TGTCCCTGCACAACCTCCGTGTGTACGCCCTTGGGATTGCCATCTACACC
CTCCTCCCACTTACTGTTGCCTCCTTCACCAAAGTGTCCACCATCTCGTT
GACGTACACAAAAGATTGTCCATCCTCCGCCTCTCGCACCACTTCGCCCA
CCAATGAAGTCATCCACCGCTGGCCCTTCATGCTCGCCAGAACCGTGCCG
CCATCAGACGCAATCACCCAGCTGTGCACCCCAGGATGTCCAAATTTCTT
GGTATGAAACCCTCACGCTGCGCCACCGCCTCCGCTTGATAGTCGTTGCA
GTCGTCGGGAAGCTTGAAGACCTCTGCTCAATATTCTGCCCCTCTGGATC
CAGCGTCACAAAAAAGCCGCCCCCACCCCGCTCTCCTTCTTGAACCCATC
TGTGTATGCCACCCCCACCCCCGGCCGGGGCTCAATCAATTCTTCAGCCC
ATTCCTCTTTCCGCCTCAGCGTAATGTCCAGTGACCTCCTGCCTGGCGGG
TAGGGTAGCTTCCAGTCAGCCAACCGCCGCTCAAAGCTGCCACCCAACTC
GACCCCGGCCTCAAGCATCAATCGTCGCAAAAAGGCCAGGTGAGAACTCC
AAGCACAGCCATCCCTGAGCTCCTCCGCCCTTCCCCTCAACGTGTAATGA
GAGTACTAGAGCACCACCAACTCCTTTGCGAACAGATTGACGGGGGTCAA
GCCCGCCAAGGCAAGTGCCACCTCCACTTTCGTGGTCTTGAAGCAACCTG
TCATTGCCAGAGCCGCCTTCCGCTGAACCGACCTGAGCTGCTTTACCACC
GTCTTCCGCTCCAGCGCCTTCCCCCAAACTGCCACCCCATTGTGAAAGGG
CGTATATATATTCATAAATATATAATAAGCCATGTACTTTTTGTTTCAAG
TTGGTAATATTGATGAATTTTAAAAGAGAAGGTTTGGGTAATTGCAACTA
CTACTACTGGTAGAAGGGAGAAGCTTTTGTATATTATATATGCTTTCTTT
TTCTTCTTCGAGTCTGAATTATCACCAACAAGAAAGAGAAACCTGCTGGC
ACTACACTATATACCAAATTAATTATTTTTCTATAATATTATTACCACAC
AAAGTACTACTCACGTATTTGTCATAATATTTAACCGTGTAATACCATAT
ACAACAACAATTTAAATTGACACAACATTTAGGGCAACATCAGACCTGTC
CAGGCACCAAGATTAATACCAAACATGTCAAGGCCCATCTCCGGGCACGT
CCAGAATATAGAAAGGTAATAAAGTGTATCCGATTCTATCTTGAAGTCTT
CTGTAAACATGTCTTATGGATGGTGCAATCAATTTATCTTTTGTAATAAA
CATTGAGCTATACTATGCCTCCCTTTTGAAAGTTATACATAGCAACCTGA
AGAGAGGAACTCTAGCCCCTCATTCCTGGCTCTCGCATTTAAGGCTGCCC
CATTATAGACAAACTGCCGGTGCCAAGGAGGGTCCCTGGCCGCCCCGCCC
CTCCCCCGCCTAGCAGCGGCAGTGCCCGGACACCCAGCAACAGCAGCCGC
CGCGCGAACACCCATAGTGCGCCCGCCCGCCCGCCCGCCCGCACCCCACT
CCCCCCGCCACCCCCCGCCCGCCTCTCCCGGCCGGGGCCAGGGACCCGGT
GGTCTTCCGGGGCGGCTTCCGCATGCCCGGCCGCACCAACACCAACTCGG
GCCACCTGCCCGCCGCCGGGGACGCGTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1122:165704..170332+

>mRNA_H-akashiwo_Contig1122.2.1 ID=mRNA_H-akashiwo_Contig1122.2.1|Name=mRNA_H-akashiwo_Contig1122.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=240bp|location=Sequence derived from alignment at H-akashiwo_Contig1122:165704..170332+ (Heterosigma akashiwo CCMP452)
ATGTACGGAACTGACCTCGGCAGAATTCCTGTCAAGTGTATAGTGTGCGA
TCAGCCCACACCAATGAAGGGCAACATCAGACCTGTCCAGGCACCAAGAT
TAATACCAAACATGTCAAGGCCCATCTCCGGGCACGTCCAGAATATAGAA
AGGGACCCGGTGGTCTTCCGGGGCGGCTTCCGCATGCCCGGCCGCACCAA
CACCAACTCGGGCCACCTGCCCGCCGCCGGGGACGCGTGA
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