mRNA_H-akashiwo_Contig1120.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1120.7.1
Unique NamemRNA_H-akashiwo_Contig1120.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1120.7.1 vs. uniprot
Match: UPI001FBACACB (uncharacterized protein LOC125063125 n=1 Tax=Pieris napi TaxID=78633 RepID=UPI001FBACACB)

HSP 1 Score: 128 bits (322), Expect = 1.470e-33
Identity = 60/151 (39.74%), Postives = 97/151 (64.24%), Query Frame = 1
Query:    7 LYGMPKVHKKDCPVREISSAVGSPGHDLSAALSKLLMPMVGKTRTYVRDGYHFVELIQQRWSRRVDRMVSLDISAMFPNIPMAEALEVLEKRLRRFEKSEEVMRLVKEVCAAPYFLCEFGLFKQVDGVPMGGPLSCLISDIFMEDYEEKAV 459
            +YG+PK+HK + P+R I S + SP + L+  L  +L P+ G T  +V+D YHFVE ++       + MVS DI ++F N+P+ + L+++ KRLR    S + + +VK    + Y + +   + QVDGV MG P+S +++DIFMED+EE+A+
Sbjct:    1 MYGLPKIHKHNNPLRPIVSHIDSPTYKLAKHLVSILSPLRGHTSAHVKDSYHFVETLRDLKLLHNETMVSFDIESLFTNLPLNDCLDIIAKRLREQNMSPDYVDIVKHCLTSGYLMWKDEFYVQVDGVAMGSPVSPIVADIFMEDFEERAL 151          
BLAST of mRNA_H-akashiwo_Contig1120.7.1 vs. uniprot
Match: A0A2J7PER2_9NEOP (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7PER2_9NEOP)

HSP 1 Score: 127 bits (320), Expect = 2.850e-33
Identity = 63/161 (39.13%), Postives = 102/161 (63.35%), Query Frame = 1
Query:    1 PWLYGMPKVHKKDCPVREISSAVGSPGHDLSAALSKLLMPMVGKTRTYVRDGYHFVELIQQRWSRRVDRMVSLDISAMFPNIPMAEALEVLEKRL--------RRFEKSEEVMRLVKEVCAAPYFLCEFGLFKQVDGVPMGGPLSCLISDIFMEDYEEKAV 459
            P LYG+PK+HK D P+R I S++GSP + L+A L K+L P+ G++ ++V++  HF+EL++    RR D + S D+ ++F N+P+ EAL+V+  RL        R   K E +M L+       YF  + G ++Q DG+ MG  LS ++S+I+ME +E+ A+
Sbjct:  103 PHLYGLPKIHKPDTPLRPIVSSIGSPCYALAAFLQKILSPLAGRSGSFVKNSGHFIELLKSVNLRRHDMLASFDVVSLFTNVPVDEALQVIRSRLSNDNTLAERSVLKVEAIMELLDVCLRTTYFQMDDGFYQQKDGMAMGSSLSPVVSNIYMEHFEQLAI 263          
BLAST of mRNA_H-akashiwo_Contig1120.7.1 vs. uniprot
Match: UPI001E280C17 (uncharacterized protein LOC123702515 n=1 Tax=Colias crocea TaxID=72248 RepID=UPI001E280C17)

HSP 1 Score: 129 bits (323), Expect = 4.200e-33
Identity = 58/153 (37.91%), Postives = 96/153 (62.75%), Query Frame = 1
Query:    1 PWLYGMPKVHKKDCPVREISSAVGSPGHDLSAALSKLLMPMVGKTRTYVRDGYHFVELIQQRWSRRVDRMVSLDISAMFPNIPMAEALEVLEKRLRRFEKSEEVMRLVKEVCAAPYFLCEFGLFKQVDGVPMGGPLSCLISDIFMEDYEEKAV 459
            P +YG+PK+HK + P+R I S + +P   LS  +S++L P+ G T  YV+D YHFVE+++       + MVS D+ ++F N+P+ + + +++KRL       E   +++    + Y L     + QVDGV MG P+S +++DIFMED+EE+A+
Sbjct:   61 PKMYGLPKIHKTNTPLRPIVSQIDTPTQKLSQHMSRVLAPLRGNTSAYVKDSYHFVEILKDLNIENNETMVSFDVQSLFTNLPVTDCINIVKKRLGEHNMPLEYAEILEHCLTSGYLLWNGEFYMQVDGVAMGSPVSPVVADIFMEDFEERAL 213          
BLAST of mRNA_H-akashiwo_Contig1120.7.1 vs. uniprot
Match: UPI001FB9CE6A (uncharacterized protein LOC125049061 n=4 Tax=Pieris TaxID=7115 RepID=UPI001FB9CE6A)

HSP 1 Score: 129 bits (325), Expect = 2.570e-32
Identity = 61/153 (39.87%), Postives = 98/153 (64.05%), Query Frame = 1
Query:    1 PWLYGMPKVHKKDCPVREISSAVGSPGHDLSAALSKLLMPMVGKTRTYVRDGYHFVELIQQRWSRRVDRMVSLDISAMFPNIPMAEALEVLEKRLRRFEKSEEVMRLVKEVCAAPYFLCEFGLFKQVDGVPMGGPLSCLISDIFMEDYEEKAV 459
            P +YG+PK+HK + P+R I S + SP + L+  L  +L P+ G T  +V+D YHFVE ++       + MVS DI ++F N+P+ + L+++ KRLR    S + + +VK    + Y + +   + QVDGV MG P+S +++DIFMED+EE+A+
Sbjct:   61 PKMYGLPKIHKHNNPLRPIVSHIDSPTYKLAKHLVSILSPLRGHTSAHVKDSYHFVETLRDLKLLHNETMVSFDIESLFTNLPLNDCLDIIAKRLREQNMSPDYVDIVKHCLTSGYLMWKDEFYVQVDGVAMGSPVSPIVADIFMEDFEERAL 213          
BLAST of mRNA_H-akashiwo_Contig1120.7.1 vs. uniprot
Match: UPI001E27EC5F (uncharacterized protein LOC123699228 n=2 Tax=Colias crocea TaxID=72248 RepID=UPI001E27EC5F)

HSP 1 Score: 128 bits (322), Expect = 6.690e-32
Identity = 58/153 (37.91%), Postives = 96/153 (62.75%), Query Frame = 1
Query:    1 PWLYGMPKVHKKDCPVREISSAVGSPGHDLSAALSKLLMPMVGKTRTYVRDGYHFVELIQQRWSRRVDRMVSLDISAMFPNIPMAEALEVLEKRLRRFEKSEEVMRLVKEVCAAPYFLCEFGLFKQVDGVPMGGPLSCLISDIFMEDYEEKAV 459
            P +YG+PK+HK + P+R I S + +P   LS  +S++L P+ G T  YV+D YHFVE+++       + MVS D+ ++F N+P+ + + +++KRL       E   +++    + Y L     + QVDGV MG P+S +++DIFMED+EE+A+
Sbjct:   61 PKMYGLPKIHKTNTPLRPIVSQIDTPTQKLSQHMSRVLAPLRGNTSAYVKDSYHFVEILKDLNIANNETMVSFDVQSLFTNLPVTDCINIVKKRLGEHNMPLEYAEILEHCLTSGYLLWNGEFYMQVDGVAMGSPVSPVVADIFMEDFEERAL 213          
BLAST of mRNA_H-akashiwo_Contig1120.7.1 vs. uniprot
Match: UPI001FBB3FCA (uncharacterized protein LOC125050378 n=1 Tax=Pieris napi TaxID=78633 RepID=UPI001FBB3FCA)

HSP 1 Score: 129 bits (324), Expect = 8.150e-32
Identity = 61/153 (39.87%), Postives = 98/153 (64.05%), Query Frame = 1
Query:    1 PWLYGMPKVHKKDCPVREISSAVGSPGHDLSAALSKLLMPMVGKTRTYVRDGYHFVELIQQRWSRRVDRMVSLDISAMFPNIPMAEALEVLEKRLRRFEKSEEVMRLVKEVCAAPYFLCEFGLFKQVDGVPMGGPLSCLISDIFMEDYEEKAV 459
            P +YG+PK+HK + P+R I S + SP + L+  L  +L P+ G T  +V+D YHFVE ++       + MVS DI ++F N+P+ + L+++ KRLR    S + + +VK    + Y + +   + QVDGV MG P+S +++DIFMED+EE+A+
Sbjct:  333 PKMYGLPKIHKHNNPLRPIVSHIDSPTYKLAKHLVSILSPLRGHTSAHVKDSYHFVETLRDLKLLHNETMVSFDIESLFTNLPLNDCLDIIAKRLREQNMSPDYVDIVKHCLTSGYLMWKDEFYVQVDGVAMGSPVSPVVADIFMEDFEERAL 485          
BLAST of mRNA_H-akashiwo_Contig1120.7.1 vs. uniprot
Match: A0A8J2VT29_9NEOP ((African queen) hypothetical protein n=1 Tax=Danaus chrysippus TaxID=151541 RepID=A0A8J2VT29_9NEOP)

HSP 1 Score: 124 bits (312), Expect = 1.420e-31
Identity = 60/153 (39.22%), Postives = 98/153 (64.05%), Query Frame = 1
Query:    1 PWLYGMPKVHKKDCPVREISSAVGSPGHDLSAALSKLLMPMVGKTRTYVRDGYHFVELIQQRWSRRVDRMVSLDISAMFPNIPMAEALEVLEKRLRRFEKSEEVMRLVKEVCAAPYFLCEFGLFKQVDGVPMGGPLSCLISDIFMEDYEEKAV 459
            P LYG+PK+HK+D P+R I S + SP + L+  LSK+L P+ G T+++V+D Y FV  I+       D MVS D+ ++F N+P+ + +E++  +L+  +   E   L+K    + Y + +   + QVDGV MG P+S +++DIFMED+E +A+
Sbjct:   61 PKLYGLPKIHKQDVPLRPIVSQIDSPTYKLAKFLSKILSPLRGHTKSFVKDSYQFVNDIKHLKLTDNDIMVSFDVQSLFTNLPVLDCIEIVRGKLKDNKMPIEYAELLKHCLTSGYLMWKDEFYIQVDGVAMGSPVSPVVADIFMEDFEVRAL 213          
BLAST of mRNA_H-akashiwo_Contig1120.7.1 vs. uniprot
Match: UPI001E27C98F (uncharacterized protein LOC123691667 n=9 Tax=Colias crocea TaxID=72248 RepID=UPI001E27C98F)

HSP 1 Score: 128 bits (322), Expect = 1.520e-31
Identity = 58/153 (37.91%), Postives = 96/153 (62.75%), Query Frame = 1
Query:    1 PWLYGMPKVHKKDCPVREISSAVGSPGHDLSAALSKLLMPMVGKTRTYVRDGYHFVELIQQRWSRRVDRMVSLDISAMFPNIPMAEALEVLEKRLRRFEKSEEVMRLVKEVCAAPYFLCEFGLFKQVDGVPMGGPLSCLISDIFMEDYEEKAV 459
            P +YG+PK+HK + P+R I S + +P   LS  +S++L P+ G T  YV+D YHFVE+++       + MVS D+ ++F N+P+ + + +++KRL       E   +++    + Y L     + QVDGV MG P+S +++DIFMED+EE+A+
Sbjct:  334 PKMYGLPKIHKTNTPLRPIVSQIDTPTQKLSQHMSRVLAPLRGNTSAYVKDSYHFVEILKDLNIANNETMVSFDVQSLFTNLPVTDCINIVKKRLGEHNMPLEYAEILEHCLTSGYLLWNGEFYMQVDGVAMGSPVSPVVADIFMEDFEERAL 486          
BLAST of mRNA_H-akashiwo_Contig1120.7.1 vs. uniprot
Match: UPI001E2732F0 (uncharacterized protein LOC123661186 n=1 Tax=Melitaea cinxia TaxID=113334 RepID=UPI001E2732F0)

HSP 1 Score: 125 bits (313), Expect = 2.110e-31
Identity = 59/153 (38.56%), Postives = 95/153 (62.09%), Query Frame = 1
Query:    1 PWLYGMPKVHKKDCPVREISSAVGSPGHDLSAALSKLLMPMVGKTRTYVRDGYHFVELIQQRWSRRVDRMVSLDISAMFPNIPMAEALEVLEKRLRRFEKSEEVMRLVKEVCAAPYFLCEFGLFKQVDGVPMGGPLSCLISDIFMEDYEEKAV 459
            P LYG+PK+HK D P+R I S + SP + L+  ++ +L P+ G+TR + RD YHFV  I+       + MVS D+ ++F  +P+ + + ++ ++L+  +   E   L+K    + Y L     +KQVDGV MG P+S +++DIFMED+EE A+
Sbjct:  204 PKLYGLPKIHKADAPLRPIVSQIDSPTYRLAKHVAHVLSPLRGQTRAHTRDSYHFVNEIKHLHLSNNETMVSFDVQSLFTCLPVEDCISIVSRKLKENDMPIEYADLLKHCLTSGYMLWNNQFYKQVDGVAMGSPVSPVVADIFMEDFEETAL 356          
BLAST of mRNA_H-akashiwo_Contig1120.7.1 vs. uniprot
Match: UPI001F596E03 (uncharacterized protein LOC124645380 n=2 Tax=Helicoverpa zea TaxID=7113 RepID=UPI001F596E03)

HSP 1 Score: 125 bits (314), Expect = 2.710e-31
Identity = 60/153 (39.22%), Postives = 94/153 (61.44%), Query Frame = 1
Query:    1 PWLYGMPKVHKKDCPVREISSAVGSPGHDLSAALSKLLMPMVGKTRTYVRDGYHFVELIQQRWSRRVDRMVSLDISAMFPNIPMAEALEVLEKRLRRFEKSEEVMRLVKEVCAAPYFLCEFGLFKQVDGVPMGGPLSCLISDIFMEDYEEKAV 459
            P LYG+PK+HK + P+R I S + SP + L+  L+K+L P+ G T  YV+D YHFV  I+       + MVS D+ ++F  +P+ + ++++ K+L       E   L+K    + Y L     + QVDGV MG P+S +++DIFMED+EE+A+
Sbjct:   61 PKLYGLPKIHKPNAPLRPIVSQIDSPTYRLAQHLAKVLSPLRGNTAAYVKDSYHFVSEIKYLQLADNETMVSFDVQSLFTCLPVEDCIKIVSKKLAENNMPTEYAELLKHCLTSGYLLWNNHFYTQVDGVAMGSPVSPIVADIFMEDFEERAL 213          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1120.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001FBACACB1.470e-3339.74uncharacterized protein LOC125063125 n=1 Tax=Pieri... [more]
A0A2J7PER2_9NEOP2.850e-3339.13Reverse transcriptase domain-containing protein (F... [more]
UPI001E280C174.200e-3337.91uncharacterized protein LOC123702515 n=1 Tax=Colia... [more]
UPI001FB9CE6A2.570e-3239.87uncharacterized protein LOC125049061 n=4 Tax=Pieri... [more]
UPI001E27EC5F6.690e-3237.91uncharacterized protein LOC123699228 n=2 Tax=Colia... [more]
UPI001FBB3FCA8.150e-3239.87uncharacterized protein LOC125050378 n=1 Tax=Pieri... [more]
A0A8J2VT29_9NEOP1.420e-3139.22(African queen) hypothetical protein n=1 Tax=Danau... [more]
UPI001E27C98F1.520e-3137.91uncharacterized protein LOC123691667 n=9 Tax=Colia... [more]
UPI001E2732F02.110e-3138.56uncharacterized protein LOC123661186 n=1 Tax=Melit... [more]
UPI001F596E032.710e-3139.22uncharacterized protein LOC124645380 n=2 Tax=Helic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1120contigH-akashiwo_Contig1120:132489..133010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog13037.EHJ75938
PFAMsMFS_1,Sugar_tr
Model size459
Max annot lvl2759|Eukaryota
KEGG koko:K08202,ko:K08203
KEGG TC2.A.1.19.2,2.A.1.19.3,2.A.1.19.4
KEGG Pathwayko05231,map05231
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.93e-28
EggNOG OGsKOG0255@1|root,KOG0255@2759|Eukaryota
Descriptionsolute carrier family 22
Cds size444
COG categoryGM
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387089.796091-CDS-H-akashiwo_Contig1120:132488..1326431681387089.796091-CDS-H-akashiwo_Contig1120:132488..132643Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1120 132489..132643 -
1681387089.8091528-CDS-H-akashiwo_Contig1120:132676..1327861681387089.8091528-CDS-H-akashiwo_Contig1120:132676..132786Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1120 132677..132786 -
1681387089.8184855-CDS-H-akashiwo_Contig1120:132816..1329951681387089.8184855-CDS-H-akashiwo_Contig1120:132816..132995Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1120 132817..132995 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387089.8274136-UTR-H-akashiwo_Contig1120:132995..1330101681387089.8274136-UTR-H-akashiwo_Contig1120:132995..133010Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1120 132996..133010 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1120.7.1prot_H-akashiwo_Contig1120.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1120 132489..132995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1120.7.1

>prot_H-akashiwo_Contig1120.7.1 ID=prot_H-akashiwo_Contig1120.7.1|Name=mRNA_H-akashiwo_Contig1120.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=148bp
MPKVHKKDCPVREISSAVGSPGHDLSAALSKLLMPMVGKTRTYVRDGYHF
VELIQQRWSRRVDRMVSLDISAMFPNIPMAEALEVLEKRLRRFEKSEEVM
RLVKEVCAAPYFLCEFGLFKQVDGVPMGGPLSCLISDIFMEDYEEKAV
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mRNA from alignment at H-akashiwo_Contig1120:132489..133010-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1120.7.1 ID=mRNA_H-akashiwo_Contig1120.7.1|Name=mRNA_H-akashiwo_Contig1120.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=522bp|location=Sequence derived from alignment at H-akashiwo_Contig1120:132489..133010- (Heterosigma akashiwo CCMP452)
CCGTGGCTTTATGGCATGCCCAAGGTGCACAAGAAGGACTGCCCGGTGCG GGAGATCTCTAGTGCGGTGGGCAGCCCTGGTCATGATCTGTCGGCGGCCC TTAGTAAGCTGTTGATGCCTATGGTTGGGAAGACGCGTACTTATGTCCGT GATGGGTACCATTTTGTTGAATTGATTCAGCAGAGGTGGTCAAGGTTTTC TATGGCGGCCCGGCGGCGCGGGAGACGGGTTGACCGGATGGTGAGCCTGG ACATCAGTGCTATGTTTCCCAATATTCCTATGGCTGAGGCTTTGGAGGTG CTGGAGAAGCGGCTTAGGCGGTTTGAGAAGTCTGGTGAGTTGGCCGAGCG TACTGACCTTTCAGCAGAGGAGGTGATGCGGCTGGTGAAGGAGGTGTGTG CGGCCCCTTACTTTCTATGCGAGTTTGGTTTGTTCAAGCAGGTGGATGGC GTGCCTATGGGTGGCCCTTTGTCCTGCCTCATCTCTGACATTTTCATGGA GGATTATGAGGAGAAGGCTGTC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1120:132489..133010-

>mRNA_H-akashiwo_Contig1120.7.1 ID=mRNA_H-akashiwo_Contig1120.7.1|Name=mRNA_H-akashiwo_Contig1120.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=444bp|location=Sequence derived from alignment at H-akashiwo_Contig1120:132489..133010- (Heterosigma akashiwo CCMP452)
ATGCCCAAGGTGCACAAGAAGGACTGCCCGGTGCGGGAGATCTCTAGTGC
GGTGGGCAGCCCTGGTCATGATCTGTCGGCGGCCCTTAGTAAGCTGTTGA
TGCCTATGGTTGGGAAGACGCGTACTTATGTCCGTGATGGGTACCATTTT
GTTGAATTGATTCAGCAGAGGTGGTCAAGACGGGTTGACCGGATGGTGAG
CCTGGACATCAGTGCTATGTTTCCCAATATTCCTATGGCTGAGGCTTTGG
AGGTGCTGGAGAAGCGGCTTAGGCGGTTTGAGAAGTCTGAGGAGGTGATG
CGGCTGGTGAAGGAGGTGTGTGCGGCCCCTTACTTTCTATGCGAGTTTGG
TTTGTTCAAGCAGGTGGATGGCGTGCCTATGGGTGGCCCTTTGTCCTGCC
TCATCTCTGACATTTTCATGGAGGATTATGAGGAGAAGGCTGTC
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