mRNA_H-akashiwo_Contig1119.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1119.5.1
Unique NamemRNA_H-akashiwo_Contig1119.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1119.5.1 vs. uniprot
Match: A0A7S4D6F5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6F5_HETAK)

HSP 1 Score: 130 bits (326), Expect = 1.480e-36
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 1 
Query:    1 ARWRAVGLGDLLQPPAVRRAYLRSMMVVHEDKVVDLPPEHQYIANRACEGLTEAYKIFTEAELS 192
            ARWRAVGLGDLLQP AVRRAYLRSMMVVHEDKVVDLPPEHQYIANRACEGLTEAYKIFTEAELS
Sbjct:  145 ARWRAVGLGDLLQPAAVRRAYLRSMMVVHEDKVVDLPPEHQYIANRACEGLTEAYKIFTEAELS 208
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BLAST of mRNA_H-akashiwo_Contig1119.5.1 vs. uniprot
Match: A0A7S3XSW5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSW5_HETAK)

HSP 1 Score: 130 bits (326), Expect = 1.700e-36
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 1 
Query:    1 ARWRAVGLGDLLQPPAVRRAYLRSMMVVHEDKVVDLPPEHQYIANRACEGLTEAYKIFTEAELS 192
            ARWRAVGLGDLLQP AVRRAYLRSMMVVHEDKVVDLPPEHQYIANRACEGLTEAYKIFTEAELS
Sbjct:  150 ARWRAVGLGDLLQPAAVRRAYLRSMMVVHEDKVVDLPPEHQYIANRACEGLTEAYKIFTEAELS 213
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BLAST of mRNA_H-akashiwo_Contig1119.5.1 vs. uniprot
Match: A0A482SC82_9ARCH (J domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SC82_9ARCH)

HSP 1 Score: 61.6 bits (148), Expect = 3.930e-11
Identity = 27/61 (44.26%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:    4 RWRAVGLGDLLQPPAVRRAYLRSMMVVHEDKVVDLPPEHQYIANRACEGLTEAYKIFTEAE 186
            +W+A+GLGDLL+P  V++AY ++M+VVH D    +  E ++I  R  E + EAY  FT+ E
Sbjct:   10 KWKAIGLGDLLEPIQVKKAYRKAMLVVHPDHTGGMDSEVKFICKRVFEAVNEAYDEFTKKE 70
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BLAST of mRNA_H-akashiwo_Contig1119.5.1 vs. uniprot
Match: B7FQR3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQR3_PHATC)

HSP 1 Score: 55.5 bits (132), Expect = 2.400e-7
Identity = 24/62 (38.71%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:    1 ARWRAVGLGDLLQPPAVRRAYLRSMMVVHEDKVVDLPPEHQYIANRACEGLTEAYKIFTEAE 186
            A+W+ VG+GD++    V+R YL++ +VVH DK   L  E +++A R  + L++A K F E +
Sbjct:  418 AKWKPVGIGDIMDNNKVKRCYLKATLVVHPDKTHHLDAEKRFLAKRIFDALSQAKKDFDEGK 479
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BLAST of mRNA_H-akashiwo_Contig1119.5.1 vs. uniprot
Match: A0A7S3QTI5_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QTI5_DUNTE)

HSP 1 Score: 50.8 bits (120), Expect = 8.730e-6
Identity = 24/58 (41.38%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    7 WRAVGLGDLLQPPAVRRAYLRSMMVVHEDKVVDL--PPEHQYIANRACEGLTEAYKIF 174
            W+ VG+GDLL+PP V++ Y+++ ++VH DKV      PE   IA+   + L EA+ +F
Sbjct:  198 WKPVGMGDLLEPPQVKKVYMKANLLVHPDKVRQRNGTPEQVAIADMIFDVLKEAWIVF 255
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BLAST of mRNA_H-akashiwo_Contig1119.5.1 vs. uniprot
Match: A0A7S3QSJ1_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QSJ1_DUNTE)

HSP 1 Score: 50.8 bits (120), Expect = 1.030e-5
Identity = 24/58 (41.38%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    7 WRAVGLGDLLQPPAVRRAYLRSMMVVHEDKVVDL--PPEHQYIANRACEGLTEAYKIF 174
            W+ VG+GDLL+PP V++ Y+++ ++VH DKV      PE   IA+   + L EA+ +F
Sbjct:  437 WKPVGMGDLLEPPQVKKVYMKANLLVHPDKVRQRNGTPEQVAIADMIFDVLKEAWIVF 494
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1119.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S4D6F5_HETAK1.480e-3698.44Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XSW5_HETAK1.700e-3698.44Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A482SC82_9ARCH3.930e-1144.26J domain-containing protein n=1 Tax=archaeon TaxID... [more]
B7FQR3_PHATC2.400e-738.71Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S3QTI5_DUNTE8.730e-641.38Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A7S3QSJ1_DUNTE1.030e-541.38Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1119contigH-akashiwo_Contig1119:245915..246109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LHK2
Preferred nameSWA2
PFAMsUBA,Ubiq-assoc
Model size195
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006810,GO:0006897,GO:0006898,GO:0006996,GO:0007029,GO:0008150,GO:0009987,GO:0010256,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0022411,GO:0030276,GO:0030544,GO:0031072,GO:0031593,GO:0031982,GO:0031984,GO:0032182,GO:0032781,GO:0032984,GO:0032991,GO:0042175,GO:0043085,GO:0043130,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043462,GO:0043624,GO:0043933,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048308,GO:0048309,GO:0050790,GO:0051179,GO:0051234,GO:0051261,GO:0051336,GO:0051345,GO:0065007,GO:0065009,GO:0071840,GO:0072318,GO:0072319,GO:0098657,GO:0098827,GO:0140030
Exons1
Evalue8.52e-12
EggNOG OGsKOG0431@1|root,KOG0431@2759|Eukaryota
Descriptionclathrin-coated pit assembly
Cds size195
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387087.3204594-CDS-H-akashiwo_Contig1119:245914..2461091681387087.3204594-CDS-H-akashiwo_Contig1119:245914..246109Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1119 245915..246109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1119.5.1prot_H-akashiwo_Contig1119.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1119 245915..246109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1119.5.1

>prot_H-akashiwo_Contig1119.5.1 ID=prot_H-akashiwo_Contig1119.5.1|Name=mRNA_H-akashiwo_Contig1119.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=65bp
ARWRAVGLGDLLQPPAVRRAYLRSMMVVHEDKVVDLPPEHQYIANRACEG
LTEAYKIFTEAELS*
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mRNA from alignment at H-akashiwo_Contig1119:245915..246109+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1119.5.1 ID=mRNA_H-akashiwo_Contig1119.5.1|Name=mRNA_H-akashiwo_Contig1119.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=195bp|location=Sequence derived from alignment at H-akashiwo_Contig1119:245915..246109+ (Heterosigma akashiwo CCMP452)
GCCCGCTGGCGCGCGGTGGGCCTGGGCGACCTGCTGCAGCCCCCAGCGGT
GCGGCGCGCGTACCTGCGGTCCATGATGGTGGTGCACGAGGACAAGGTGG
TGGACCTGCCGCCCGAGCACCAGTACATCGCCAACCGCGCCTGCGAGGGG
CTGACCGAGGCCTATAAGATCTTCACCGAGGCTGAGCTTTCCTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1119:245915..246109+

>mRNA_H-akashiwo_Contig1119.5.1 ID=mRNA_H-akashiwo_Contig1119.5.1|Name=mRNA_H-akashiwo_Contig1119.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=195bp|location=Sequence derived from alignment at H-akashiwo_Contig1119:245915..246109+ (Heterosigma akashiwo CCMP452)
GCCCGCTGGCGCGCGGTGGGCCTGGGCGACCTGCTGCAGCCCCCAGCGGT
GCGGCGCGCGTACCTGCGGTCCATGATGGTGGTGCACGAGGACAAGGTGG
TGGACCTGCCGCCCGAGCACCAGTACATCGCCAACCGCGCCTGCGAGGGG
CTGACCGAGGCCTATAAGATCTTCACCGAGGCTGAGCTTTCCTGA
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